TCONS_00046812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046812
Unique NameTCONS_00046812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046812 ID=TCONS_00046812|Name=TCONS_00046812|organism=Clytia hemisphaerica|type=transcript|length=899bp
CATGTGGACATTACTTTAATTATAATAGCCCAGATTTTAGATATTTcatc
aaacaaagtttagaaGTTTCATAAATCAATTCATTTTGATTCATCTTAAA
GACACGTTACTACTACGATGGCTTGCTTCAAATTAATTCTAATTTTCTTT
GCAACAATAATCAGTCTAAATGGATCAATCGCAGGACCATTGAATTCCGA
TAAAGGATCATACATTCCAAAAGAGATTGAGAATGACAATGAAATCGAAT
ACGATTCGCTAATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAG
AAACGATCTTATTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATC
CGATCCTAGACCTCTAATGATGCTTGGAGCATCAGGTGGCAAATTCAATG
GAAAGAAACGATCTTATTTCTATGGCgacgaagatgaagatgaaagaGAA
CTATCCGATCCTAGACCTCttCTTGTATGGGGAGCTTCAACGTCACCTTA
CGCTGGTAAAAGATAACCTTATATGAAAAATACGAATTCGCATTGTCAGC
ACattcatgatatttatgacgtaatgttttatatggAAGTACCCGAAAAA
GACTGGATGTTTTCCACTTGTGGCAAGCACCCTGACTATTTTGCGTGCTT
CCGTAAAAATTATTATGTCATGAATATTATGAATTGTATGTCTAACAAGA
TGAGGGTGCCGCATTCAAAGTGTTTATactttttaaatatcaaaaatgat
ttcgaaaatatttgaaatatctTGAAATATCTTGAATCTTACTTggaaca
aaaatctttttaaatacCTTGGTAAGTCTGAAAGGGATAATTTATGACTT
TTACTTTAGTCATTATCCTTATAAAATGAAGATTATTCTTCATAAATTT
Run BLAST on NCBI

protein sequence of TCONS_00046812-protein

>TCONS_00046812-protein ID=TCONS_00046812-protein|Name=TCONS_00046812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MACFKLILIFFATIISLNGSIAGPLNSDKGSYIPKEIENDNEIEYDSLMM
LGSSGGKFNGKKRSYFYGDEDEDERELSDPRPLMMLGASGGKFNGKKRSY
FYGDEDEDERELSDPRPLLVWGASTSPYAGKR
Run BLAST on NCBI

transcript from alignment at scaffold_117:469672..473978-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046812 ID=TCONS_00046812|Name=TCONS_00046812|organism=Clytia hemisphaerica|type=transcript|length=4307bp|location=Sequence derived from alignment at scaffold_117:469672..473978- (Clytia hemisphaerica)
CATGTGGACATTACTTTAATTATAATAGCCCAGATTTTAGATATTTCATC
AAACAAAGTTTAGAAGTTTCATAAATCAATTCATTTTGATTCATCTTAAA
GACACGTTACTACTACGATGGCTTGCTTCAAATTAATTCTAATTTTCTTT
GCAACAATAATCAGTCTAAATGGTAGGTATCAATTTTATCTTTGTCATCT
TTAATTTGGTTGAAAAGCTTGCCTTTTTGATAAAAATATTTTTTTCGTAT
TTTTTCAGTTCTATGAAATTATCATAGGAAATTATTATTCCTCTAAATTA
AGAAACTGTCTTGGTGTTTCCTTGGGAATAACAAATGGGTATACTTGAAA
CTGACTTTGTAATGCTTAAGGTAGTTCAAATAATTTTATTCAACATATAA
CATAACAGCTTAGTAAAAATAATGAAAATATTTCTCAGTATATTCAGTGG
TCCATTACAGGTAGCGCGTAGAGAAAATTCATGAGAAACCCTGGGGGATA
CTGACCCTGATAGGCGACGTACTGGAGTTTTCCACCTTATTTTTTACGTC
CCGCGTATGCGGATCTTGCCAAAGGATGCTACACTCCCTAAATGGACCTG
ACGGTTAAAAAATCTGGTATTTTTACATCCCTTTCTCACAGACCTTTGGG
GTAAAAATCATGGACTGACTCAATGGGGATTGATATTTCCATATTTTTTA
TGGCTGAAGATTTGAATTCTATATTGTTTGCAAGTCAGAAAAGTCAATGG
AGATGGGAAAAAAAGCATAATATTTTGCAGTGAGGATTGGTTTACTTGCG
TATTTTCAGTGGGGACAAAAATTGGAGTATGATTTTCCACTGTGGACGAT
TTTTGGCCAATTTTTCCAGTGGGAAGGGGTCTGTGAGAAGAGGGTGTCTT
ACTGAAACCCCTTTTAGTTAGATTTTTAGAAAATTTTCTTTTTTGAATGA
AAATTGTTATCATCTTTAATTTTTCAGGATCAATCGCAGGACCATTGAAT
TCCGATAAAGGATCATACATTCCAAAAGAGATTGAGAATGACAATGAAAT
CGAATACGATTCGCGTAAGACCTTTTAAATAGTAAGAGGAGGAAGATGGC
AAAATAGACTGACCTTTAACTTTGTCTAAAATACTAGGACTGAATATACC
TTAAATGGGGAAAAGTTAGTAAAGGAAAGATGAAGAAGTTTTCCCGGAGT
AAAAAAAACCTTTCTGGTCAATTTCAAGCGAGTCGTGACAATGATTTTTA
CAAAAGTGACAACATGTTTTCTCTGACTTATATTCTCCCTGAAGAATAGT
TTTCCCCAATAGAGTTATTCTCTTTAAGGTGATTTTTCCAATTTCTTTTT
CGTCCCACAATGATTAAACCCCTAACTATCTGAAAACAATTTTCATTGGG
TCAATAAGACAGAGATCTGCCAAAGAGGAAAAAATATTTATTTTTGAACA
AATGGACTAATGTAAGGCTTAGAAAAATCAAAAAATCTTAAAAATAAAAT
CTCAGTCCCACGAAAGGTTGGACACCCTAGTACCCTGACGGGCAATATTT
AGAGCCATTGTCAGGATGCAAAATTTCTTTGGTAACTCAGGTTTTCCATT
TTTTCATAGTAATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAG
AAACGATCTTATTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATC
CGATCCTAGACCTCGTAAGTAATTCTATTTTTAGAGAAAGCAAAGGTAAG
TTTAGAACCATTTGTGAATCTTTAGGGGACCTGATCAGCCTGCAGGAACA
ACTTTCAGTCAAATCGAATGACCCGATGAGTCTATGCACGATCTTAGTCA
GGTTTACATCTTGGTCTGTAAAATACCAACCAGACAAGTGGCTAAACTAA
AAATTAGCAAATCATCTTTGATTATCCATATCTACCACAAGTCAAAATTT
TTAGGTCATAGCACTTATCAATTTTGTCTTCAGGACTCATTATAAAGCGC
TATATCGCTTCAAAAATTCACTTCCAGCTCTACGTAGTGACAATTGAGTC
CTCGGGTTCTACATGACCTCGTAGCTCAATTGGTAGAGTAAATGCCCGCG
AATGGTATGGTTGTGAGTTCGAGTCTTACCGGATTCGTTTATTTCCAACG
GCTCTGGTGACTGGTCAGAAGACAACATGAGAGCAACTGTATTCACTTCA
CTTTATAACAAAGGGCACAATGTATGAACAAGACTTCTGCTATGCGAGCC
AAACCCCACCATCTTGAAGCAACAACGCCCCTTTCTGGAAAATGGGCACA
ATATAACACTAATCTCTTTCCCCTTTTTTCATAGTAATGATGCTTGGAGC
ATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTATTTCTATGGCGACG
AAGATGAAGATGAAAGAGAACTATCCGATCCTAGACCTCGTAAGTAATTC
TAATGAAAATCCTTTTTTAAGTGCAAACGGAAATCTCTTAAGGAAGGGGC
AAATGCATTCAATACTTGATCCAACATATCAAATTTTTGGTTGGACGAAA
TGTTGGATGAAAGTCATGTGGATAAATTCGAAAAGTCATTTACCCAAAAA
CGTCAAACATTTTCATCCAACATGATTACGCAAAAAGCTACGTCTGTAAG
CTATGTAAATATTCGATTTTACTACGTATACATCTTTGTGAAAATGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCAT
CCAACATTGAAGCCAACATGTTTTAAGTGACGTCAAATCTCATATGAGAT
GTTGGATGAAAATGTCCGAAGTATTCCTCTTGACTACTACCCTGAGTATC
AGAGGTTAAGTTTTCAAAGAATATATTAACCTCTGGAGACCAATAATAGA
AATTTTATCACGCATGTGTCAATCTAATCACTTTAGAAAAAATCAAAGAT
GAAGAGAAAATTATTACCTTATTAATGTCTAGCAGACTGTATCAGTATGC
AGTTTACTATTTACGAATTTCCCGCAGAAACCTCCAAGTTTAATAGACGA
TCTCGGATTTAGATAAATGCAATGCATTCTGGTTTCTAGGGACTCTCAAA
GGAATTATAATAGATCAATTATAATAGATTATAATTCCTTTGAGAGTCCC
TAGAAACCAGAATGCATTTCATTTATCTAAATCCGATATCGTCTATTGAA
TTGAGTTTCTTTCGAAAGAAATCTTTTACATGATCCCCAAATGTATAGCA
GTACTAAACTATTAATTATTAGGGAGGTTAAGTATCAAAGATAAATCTAC
GCGACGAACGGGCCTTTTCTCTGCAAGATGGTAAGGGTAGCAAAGTAGAT
GTTACATCTTCTTTGTTCAACAACGAAGATGTTCACGGTTTTTCGTTCTT
GAGCTGTTTTAGCCTGGATTCTAGAAAATGCAGGTCCACATGTTTACTGC
AGGTTGCGGGTCAAAACCCGTTCGTTCGTCGCGTTGATTTATCTTTGATA
CTTAACCTCCCTATTGAAATTGTCACTGAATCGAAATAATAGACTGACTT
TATGTTATGATTCTCTATCACTTACTCTTTTTAAAAAGCATTGAAGATAT
TTTTTAGTTGTGTTTTCAACGACGGGAATAAAAATATCAACTTTGAACTT
CATCCAAGATCTTGGATTGTCGTCATGGTTACTTTTCTCTGCGTTGATTG
CGCGCTGAATAGAATCTCGATTGGTTGGCACAGCGTCGATATATGATTTC
GACCTGTGCTTTTGATGGTACTAGACTACCTATGTTGCAATAACAATCAG
ACTATCTTTTGAACTTTTTATATATCTTAGCCTAGAGTCTTTTGCCGACT
TAAAACATTGTATTTCTTATTTTTCAGTTCTTGTATGGGGAGCTTCAACG
TCACCTTACGCTGGTAAAAGATAACCTTATATGAAAAATACGAATTCGCA
TTGTCAGCACATTCATGATATTTATGACGTAATGTTTTATATGGAAGTAC
CCGAAAAAGACTGGATGTTTTCCACTTGTGGCAAGCACCCTGACTATTTT
GCGTGCTTCCGTAAAAATTATTATGTCATGAATATTATGAATTGTATGTC
TAACAAGATGAGGGTGCCGCATTCAAAGTGTTTATACTTTTTAAATATCA
AAAATGATTTCGAAAATATTTGAAATATCTTGAAATATCTTGAATCTTAC
TTGGAACAAAAATCTTTTTAAATACCTTGGTAAGTCTGAAAGGGATAATT
TATGACTTTTACTTTAGTCATTATCCTTATAAAATGAAGATTATTCTTCA
TAAATTT

Coding sequence (CDS) from alignment at scaffold_117:469672..473978-

>TCONS_00046812 ID=TCONS_00046812|Name=TCONS_00046812|organism=Clytia hemisphaerica|type=CDS|length=1995bp|location=Sequence derived from alignment at scaffold_117:469672..473978- (Clytia hemisphaerica)
TTCTTGTATGGGGAGCTTCAACGTCACCTTACGCTGGTAAAAGATAATAA
TGATGCTTGGAGCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTAT
TTCTATGGCGACGAAGATGAAGATGAAAGAGAACTATCCGATCCTAGACC
TCTAATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAGAAACGAT
CTTATTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATCCGATCCT
AGACCTCGATCAATCGCAGGACCATTGAATTCCGATAAAGGATCATACAT
TCCAAAAGAGATTGAGAATGACAATGAAATCGAATACGATTCGCATGGCT
TGCTTCAAATTAATTCTAATTTTCTTTGCAACAATAATCAGTCTAAATGT
TCTTGTATGGGGAGCTTCAACGTCACCTTACGCTGGTAAAAGATAATAAT
GATGCTTGGAGCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTATT
TCTATGGCGACGAAGATGAAGATGAAAGAGAACTATCCGATCCTAGACCT
CTAATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAGAAACGATC
TTATTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATCCGATCCTA
GACCTCGATCAATCGCAGGACCATTGAATTCCGATAAAGGATCATACATT
CCAAAAGAGATTGAGAATGACAATGAAATCGAATACGATTCGCATGGCTT
GCTTCAAATTAATTCTAATTTTCTTTGCAACAATAATCAGTCTAAATGTT
CTTGTATGGGGAGCTTCAACGTCACCTTACGCTGGTAAAAGATAATAATG
ATGCTTGGAGCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTATTT
CTATGGCGACGAAGATGAAGATGAAAGAGAACTATCCGATCCTAGACCTC
TAATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAGAAACGATCT
TATTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATCCGATCCTAG
ACCTCGATCAATCGCAGGACCATTGAATTCCGATAAAGGATCATACATTC
CAAAAGAGATTGAGAATGACAATGAAATCGAATACGATTCGCATGGCTTG
CTTCAAATTAATTCTAATTTTCTTTGCAACAATAATCAGTCTAAATGTTC
TTGTATGGGGAGCTTCAACGTCACCTTACGCTGGTAAAAGATAATAATGA
TGCTTGGAGCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTATTTC
TATGGCGACGAAGATGAAGATGAAAGAGAACTATCCGATCCTAGACCTCT
AATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTT
ATTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATCCGATCCTAGA
CCTCGATCAATCGCAGGACCATTGAATTCCGATAAAGGATCATACATTCC
AAAAGAGATTGAGAATGACAATGAAATCGAATACGATTCGCATGGCTTGC
TTCAAATTAATTCTAATTTTCTTTGCAACAATAATCAGTCTAAATGTTCT
TGTATGGGGAGCTTCAACGTCACCTTACGCTGGTAAAAGATAATAATGAT
GCTTGGAGCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTATTTCT
ATGGCGACGAAGATGAAGATGAAAGAGAACTATCCGATCCTAGACCTCTA
ATGATGCTTGGATCATCAGGTGGCAAATTCAATGGAAAGAAACGATCTTA
TTTCTATGGCGATGAAGATGAAGACGAAAGAGAACTATCCGATCCTAGAC
CTCGATCAATCGCAGGACCATTGAATTCCGATAAAGGATCATACATTCCA
AAAGAGATTGAGAATGACAATGAAATCGAATACGATTCGCATGGCTTGCT
TCAAATTAATTCTAATTTTCTTTGCAACAATAATCAGTCTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029868XLOC_029868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046812-exon-scaffold_117-1575043694:473807..473978TCONS_00046812-exon-scaffold_117-1575043694:473807..473978Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1575043694:472915..473001TCONS_00046812-exon-scaffold_117-1575043694:472915..473001Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1575043694:472265..472369TCONS_00046812-exon-scaffold_117-1575043694:472265..472369Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1575043694:471540..471644TCONS_00046812-exon-scaffold_117-1575043694:471540..471644Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1575043694:469672..470101TCONS_00046812-exon-scaffold_117-1575043694:469672..470101Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1510915933:473807..473978TCONS_00046812-exon-scaffold_117-1510915933:473807..473978Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1510915933:472915..473001TCONS_00046812-exon-scaffold_117-1510915933:472915..473001Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1510915933:472265..472369TCONS_00046812-exon-scaffold_117-1510915933:472265..472369Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1510915933:471540..471644TCONS_00046812-exon-scaffold_117-1510915933:471540..471644Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1510915933:469672..470101TCONS_00046812-exon-scaffold_117-1510915933:469672..470101Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1491911889:473807..473978TCONS_00046812-exon-scaffold_117-1491911889:473807..473978Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1491911889:472915..473001TCONS_00046812-exon-scaffold_117-1491911889:472915..473001Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1491911889:472265..472369TCONS_00046812-exon-scaffold_117-1491911889:472265..472369Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1491911889:471540..471644TCONS_00046812-exon-scaffold_117-1491911889:471540..471644Clytia hemisphaericaexon
TCONS_00046812-exon-scaffold_117-1491911889:469672..470101TCONS_00046812-exon-scaffold_117-1491911889:469672..470101Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046812-proteinTCONS_00046812-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:469672..473978 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.309432	9.18556	2.44818	7.03246	13.1609	3.13271	0.933477	3.9123	3.47325	0	0.178737	1.07753	1.12756	0	0	0	0	0	0.0985368	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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