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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046815 ID=TCONS_00046815|Name=TCONS_00046815|organism=Clytia hemisphaerica|type=transcript|length=1385bp
CGCCAAACCGGTCGCCACTGTGGCTCCTCAACCTCCACCACCAGAAGAAG
AAATTTGTTTCTCTCCTCCAATGCCCGCCTTTATCCCACCACCTCCACCC
ACTGAAGAATTCGTACCTGAACCGTTGGATGATCTTCCACCACCACCGTC
GCCTCTAGATCTACCAGCACCACCGCCCGAGGTTTTAATGGCGCCCGATG
AGATAGAACCGCCCAAAGAAGTAGAGACGCCAGCAGCTCCTGTTgttcaa
caaacaacaacaacaacgactacGGCAACCACAGGAACAGTGGTCAATGA
CGATATTAACGATATTGACAAAGCgtTCAAGAATACAGATGACATAATGT
CAAACCTATTGGCAGATCTGGATGATTTCAGCTCTCAAATTGATGACATG
TTTTAAAAGAACGATTATAAACTTACAACAATAGAAATAGATGAATCTTT
GAACAAGAAGCTGTTGTCGGAAAAGTAAGAGTGTCTGATCAGTTAGAGGC
TACAAGATGATGGTTGGTGAATGATACAGGGGTGTCAACGTTCGATCATT
TTATTTGGTGGAAAATTGATACAGGGGTGTCAATTCATTCGATCATTTTA
TTTGACGGAAAGTACCTTGGTTCTTTCACATGATTCTATCATTGATCAAG
CTATTTGGCGATGCCACAAAGTTTCATGACacttcgttgaaaagatattt
cattAGAACCCACCACAGTATGAGTAGGTCTTAATTACGTCCCAAAGAAC
AATANATTTCATCAGAACCGACCACAGTATGAGTAGGTCTTAATTACGTC
CAAAAAGAACAATATACAAGTATAtaaacaaaataagaaattttcatCTA
CCAAAAGTATATGGACTAATACAAGGCTTTGGCTCTTTTGTCAGCCAAAA
AATGGCTCATATATTTTTGAGATTCATGATTTTTGTCACCTAATGTTTTA
TATGGAAATAAATAGCTTAAAACACTCGGGCGTTTACAAATCATTTTATC
GTTTGAAACTCGATAGTAATCCTGCAGTTTTTTCCatataaaagattacg
ttgTGAATATTATGAGGTTAGATCCTAAATACAAAAAAGGGAAATGCAGa
agtttatatatttttctttttcttcgaaCGCAACATCATGTATCATATAC
AAAAATGTACCATATTTTAAATAGAATTTTAGGCTACGctgtttttctgt
tttgtttcaatttttcttgtatATGTATCGCTGTACTCTTTAtgttaaca
ttttttttgtaaatttaccACTATATATTTTCAGTAAATGACTTTCACCG
CGATTGATTTTGTACCGTACCGTAGAGTACATCCGCCTGATCTAAAGATC
AATTTAATTAATCatcgtacccagagccactcNAA Run BLAST on NCBI transcript from alignment at scaffold_117:509026..511122- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046815 ID=TCONS_00046815|Name=TCONS_00046815|organism=Clytia hemisphaerica|type=transcript|length=2097bp|location=Sequence derived from alignment at scaffold_117:509026..511122- (Clytia hemisphaerica)
CGCCAAACCGGTCGCCACTGTGGCTCCTCAACCTCCACCACCAGAAGAAG
AAATTTGTTTCTCTCCTCCAATGCCCGCCTTTATCCCACCACCTCCACCC
ACTGAAGAATTCGTACCTGAACCGTTGGATGATCTTCCACCACCACCGTC
GCCTCTAGATCTACCAGCACCACCGCCCGAGGTTTTAATGGCGCCCGATG
AGATAGAACCGCCCAAAGAAGTAGAGACGCCAGCAGCTCCTGTTGTTCAA
CAAACAACAACAACAACGACTACGGCAACCACAGGAACAGTGGTCAATGA
CGATATTAACGATATTGACAAAGCGTAAGTTGGGATTTTTTTTTGTAGTA
CTGTGTCGTTATCAAGCTAAGATTAAAACACATGTTATTTGAAATTCTCC
ATTCAAAGGGATAATCAGGTGGTCTGAGAAATTTTATTTGTTTTCTTGCC
GAAAGTTATAATTTAATTTGTAACTCTGTATTTCGAGTTTTTTAAAGTTT
TGCTCAGGATCATGGAAGGAAGCTACAAGAAAAAGATCTCAGAATCTTTG
AACAGAAATTTCTCAGATTTCTGCCATTCCCAGAATAGGCTTTGAAAATG
TAGGCTACGCATGCAAGCATACTTTCAAAAACCACTTTCCTTCGTTGACA
ACTGATTACTTTTCACAAAGACGACTTTGGAATATTATTAGTGAGGATAA
GTAAATCGTTGGACGGACGAAAATACACCCCTTCTCACAGACCCGCTGGT
ACCTCTTTCCACTGTAAAAATTGGCCCAAATATCGTCCCTCGTGGAAAAT
TATCTTACCGGGTCTGTGAGAAGGGGGCGTAGAAATATAACAAGCCTGTG
AGTTTCAACCAATCAAATTTCGTTTGGTGACTAGCCTATAACAATTTTCT
TCCGTTGTTGCAATTATCCTGGCATTCTATTAATAAAGGTTGTCAATATG
TTTCTCAAAATATTTTTTCATTGTTTTTTTTCTTTCCAGGTTCAAGAATA
CAGATGACATAATGTCAAACCTATTGGCAGATCTGGATGATTTCAGCTCT
CAAATTGATGACATGTTTTAAAAGAACGATTATAAACTTACAACAATAGA
AATAGATGAATCTTTGAACAAGAAGCTGTTGTCGGAAAAGTAAGAGTGTC
TGATCAGTTAGAGGCTACAAGATGATGGTTGGTGAATGATACAGGGGTGT
CAACGTTCGATCATTTTATTTGGTGGAAAATTGATACATGGGTGTCAATT
CATTCGATCATTTTATTTGGTGGAAAATTGATACAGGGGTGTCAATTCAT
TCGATCATTTTATTTGACGGAAAGTACCTTGGTTCTTTCACATGATTCTA
TCATTGATCAAGCTATTTGGCGATGCCACAAAGTTTCATGACACTTCGTT
GAAAAGATATTTCATTAGAACCCACCACAGTATGAGTAGGTCTTAATTAC
GTCCCAAAGAACAATANATTTCATCAGAACCGACCACAGTATGAGTAGGT
CTTAATTACGTCCAAAAAGAACAATATACAAGTATATAAACAAAATAAGA
AATTTTCATCTACCAAAAGTATATGGACTAATACAAGGCTTTGGCTCTTT
TGTCAGCCAAAAAATGGCTCATATATTTTTGAGATTCATGATTTTTGTCA
CCTAATGTTTTATATGGAAATAAATAGCTTAAAACACTCGGGCGTTTACA
AATCATTTTATCGTTTGAAACTCGATAGTAATCCTGCAGTTTTTTCCATA
TAAAAGATTACGTTGTGAATATTATGAGGTTAGATCCTAAATACAAAAAA
GGGAAATGCAGAAGTTTATATATTTTTCTTTTTCTTCGAACGCAACATCA
TGTATCATATACAAAAATGTACCATATTTTAAATAGAATTTTAGGCTACG
CTGTTTTTCTGTTTTGTTTCAATTTTTCTTGTATATGTATCGCTGTACTC
TTTATGTTAACATTTTTTTTGTAAATTTACCACTATATATTTTCAGTAAA
TGACTTTCACCGCGATTGATTTTGTACCGTACCGTAGAGTACATCCGCCT
GATCTAAAGATCAATTTAATTAATCATCGTACCCAGAGCCACTCNAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046815-exon-scaffold_117-1575043694:510799..511122 | TCONS_00046815-exon-scaffold_117-1575043694:510799..511122 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1575043694:509886..510133 | TCONS_00046815-exon-scaffold_117-1575043694:509886..510133 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1575043694:509026..509838 | TCONS_00046815-exon-scaffold_117-1575043694:509026..509838 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1510915933:510799..511122 | TCONS_00046815-exon-scaffold_117-1510915933:510799..511122 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1510915933:509886..510133 | TCONS_00046815-exon-scaffold_117-1510915933:509886..510133 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1510915933:509026..509838 | TCONS_00046815-exon-scaffold_117-1510915933:509026..509838 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1491911889:510799..511122 | TCONS_00046815-exon-scaffold_117-1491911889:510799..511122 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1491911889:509886..510133 | TCONS_00046815-exon-scaffold_117-1491911889:509886..510133 | Clytia hemisphaerica | exon |
| TCONS_00046815-exon-scaffold_117-1491911889:509026..509838 | TCONS_00046815-exon-scaffold_117-1491911889:509026..509838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:509026..511122 - |
Blast
The following BLAST results are available for this feature:
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