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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046823 ID=TCONS_00046823|Name=TCONS_00046823|organism=Clytia hemisphaerica|type=transcript|length=3814bpRun BLAST on NCBI protein sequence of TCONS_00046823-protein >TCONS_00046823-protein ID=TCONS_00046823-protein|Name=TCONS_00046823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp MADRRKLQGEVDRCLKKVSEGCELFEDIWKKVQNATNVNQKEKYESELKKRun BLAST on NCBI transcript from alignment at scaffold_117:604027..625207- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046823 ID=TCONS_00046823|Name=TCONS_00046823|organism=Clytia hemisphaerica|type=transcript|length=21181bp|location=Sequence derived from alignment at scaffold_117:604027..625207- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:604027..625207- >TCONS_00046823 ID=TCONS_00046823|Name=TCONS_00046823|organism=Clytia hemisphaerica|type=CDS|length=39117bp|location=Sequence derived from alignment at scaffold_117:604027..625207- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046823 vs. Swiss-Prot (Human)
Match: CNOT3 (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 5.107e-90 Identity = 154/245 (62.86%), Postives = 199/245 (81.22%), Query Frame = 3
Query: 354 MADRRKLQGEVDRCLKKVSEGCELFEDIWKKVQNATNVNQKEKYESELKKEIKKLQRLREQIKTWLTSSDIKDKKSLLDNRKLIELQMERFRIVEKETKTKAYSKEGLGQANKVDPETKEKERCREWLNESINTLGIQIDQMECEIESINAGTXXXXXXXXXVERIENLNERIEKHRFHTTQLEHILRLLDNETIEVESVNKIREDIEYYVENNQDQDIDEMELEGIYEDLDLDTLIGAEIIKNP 1088
MAD+RKLQGE+DRCLKKVSEG E FEDIW+K+ NA N NQKEKYE++LKKEIKKLQRLR+QIKTW+ S++IKDK+ L+DNRKLIE QMERF++VE+ETKTKAYSKEGLG A KVDP KEKE +WL +I+TL +Q+DQ E E+ES++ T+KKK DKDK +RIE L IEKHR+H LE ILR+LDN++I V+++ KI++D+EYYV+++QD D +E E +Y+DLDL+ + A + +P
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEF--LYDDLDLEDIPQALVATSP 243 HSP 2 Score: 221.09 bits (562), Expect = 1.107e-59 Identity = 111/155 (71.61%), Postives = 132/155 (85.16%), Query Frame = 3
Query: 2184 GVAPLGPVLLSQERVKQLKMLDTAYHHLPQRQDSERMRPYISRSXXXXXXXXXXXXXXNIDSLEFFQRLSTETLFFIFYYQEGTRAQYXXXXXXXXQSWRFHTKYMMWFQRHEEPKRITDEYEEGTYIFFDYEKWSQRKRDGFTFEYRYLEDKDL 2648
GV PLGPV L++E++ Q M + A+HH+P DSER+R Y+ R+ P PYHH PP+ D++EF+QRLSTETLFFIFYY EGT+AQYLAAKALKKQSWRFHTKYMMWFQRHEEPK ITDE+E+GTYI+FDYEKW QRK++GFTFEYRYLED+DL
Sbjct: 598 GVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752 The following BLAST results are available for this feature:
BLAST of TCONS_00046823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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