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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046858 ID=TCONS_00046858|Name=TCONS_00046858|organism=Clytia hemisphaerica|type=transcript|length=1291bp
TCGATACACAGAAGCAATGTTGGACCTCATTTCATCAACATTCTGCGTTC
CTGTCATCGACAAGAGTTCACCAGTCGCCTTCAGCATTGCATCAGATATC
CACTGGAACCACAAAGACGTGCAACATGCTGGCATCGAAACAACATTACG
TCACATCATGAAAAAGACCTACATCATTGAAGGACGTTCACTTGTAAAGT
TAATCAAGAAGTCATGTCAACGATGTAGATTCCTCAACAAGCGAACCATT
GAAGCTGCTATGGGACCACTACCAGAAGCATGTNTGAAGCTGCAATGGGA
CCTCTACCAGAAGCTTGCATCACAATCGCTCCTTCGTTCTACAATACGCA
ATTCGATCTCAGTGGACCATACAAAGCCTATTCTCCATTGCACAAGAGAT
CAACAATCAAAGTATGGCTTGTCGTCTACTGCTGCTGTGTTACCTCAGCA
ATCTTCATCAACGTTATGGATGATTACTCAAGCACTGCTTTTATCCAATC
CTTCACACGATTTGCTTCAAGATATGGTTTTCCAAACCAAGTCTACTGTG
ATGAAGGAACTCAACTTGTTAAAGGATCCAAGGACATGAGATTCAACTTC
AAGGACATCCAATCCAAACTTCACAAAGATCATCATGTCACCTTCCAAAC
GTGTCCTGTAGGCGCACATAACATGAATGGAAAAGTGGAACGAAAAATCA
AGGAAGTCAACACATCTTTGGAAAAAACAATCCAAAACGAACGTTTATCA
ATCCTACAATGGGAGACAATCACTGCAATCATTTCAAACTCTATAAATGA
TTTACCCATTGCTATTGGAAATGTCATCGATGTGGAGAACATGGACCTTC
TCACTCCAAATCGTCTCCTTCTAGGACGCAACAATGACCGAAGTCCAACA
GGTGATTTCATAATCTCATCTAATCCAACGAAATTACTGGACCAAAACTC
GAAAATCTATGATGCTTGGTTCGAATCATGGCTACTAAACCACGTTCCCA
AGCTCATGTCACAATCAAAATGGTTCAACCACGAACGAAACCTCCAAATT
GGTGATGTTGTTCTATTCAACAAGGTCGAATCGAAACTATCCAAATCGTA
CACGTATGGTATCATATCAAATGTTGAAGTTGGTGATGATGACAAAGTTC
GTTGTGTCATTGTCAAATATcgaaacgaaaacgaaaaagtTTCACGAGAA
ACAAGGAGATCAGTACGTAACCTGATTTTAATTCGCTCTGTGGATGATTG
TGATATCATGAAAGAATTGGGAAATATTGCTAAAAATGTGN Run BLAST on NCBI protein sequence of TCONS_00046858-protein >TCONS_00046858-protein ID=TCONS_00046858-protein|Name=TCONS_00046858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MXEAAMGPLPEACITIAPSFYNTQFDLSGPYKAYSPLHKRSTIKVWLVVY
CCCVTSAIFINVMDDYSSTAFIQSFTRFASRYGFPNQVYCDEGTQLVKGS
KDMRFNFKDIQSKLHKDHHVTFQTCPVGAHNMNGKVERKIKEVNTSLEKT
IQNERLSILQWETITAIISNSINDLPIAIGNVIDVENMDLLTPNRLLLGR
NNDRSPTGDFIISSNPTKLLDQNSKIYDAWFESWLLNHVPKLMSQSKWFN
HERNLQIGDVVLFNKVESKLSKSYTYGIISNVEVGDDDKVRCVIVKYRNE
NEKVSRETRRSVRNLILIRSVDDCDIMKELGNIAKNV Run BLAST on NCBI transcript from alignment at scaffold_117:367837..369127 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046858 ID=TCONS_00046858|Name=TCONS_00046858|organism=Clytia hemisphaerica|type=transcript|length=1291bp|location=Sequence derived from alignment at scaffold_117:367837..369127 (Clytia hemisphaerica)
NCACATTTTTAGCAATATTTCCCAATTCTTTCATGATATCACAATCATCC
ACAGAGCGAATTAAAATCAGGTTACGTACTGATCTCCTTGTTTCTCGTGA
AactttttcgttttcgtttcgATATTTGACAATGACACAACGAACTTTGT
CATCATCACCAACTTCAACATTTGATATGATACCATACGTGTACGATTTG
GATAGTTTCGATTCGACCTTGTTGAATAGAACAACATCACCAATTTGGAG
GTTTCGTTCGTGGTTGAACCATTTTGATTGTGACATGAGCTTGGGAACGT
GGTTTAGTAGCCATGATTCGAACCAAGCATCATAGATTTTCGAGTTTTGG
TCCAGTAATTTCGTTGGATTAGATGAGATTATGAAATCACCTGTTGGACT
TCGGTCATTGTTGCGTCCTAGAAGGAGACGATTTGGAGTGAGAAGGTCCA
TGTTCTCCACATCGATGACATTTCCAATAGCAATGGGTAAATCATTTATA
GAGTTTGAAATGATTGCAGTGATTGTCTCCCATTGTAGGATTGATAAACG
TTCGTTTTGGATTGTTTTTTCCAAAGATGTGTTGACTTCCTTGATTTTTC
GTTCCACTTTTCCATTCATGTTATGTGCGCCTACAGGACACGTTTGGAAG
GTGACATGATGATCTTTGTGAAGTTTGGATTGGATGTCCTTGAAGTTGAA
TCTCATGTCCTTGGATCCTTTAACAAGTTGAGTTCCTTCATCACAGTAGA
CTTGGTTTGGAAAACCATATCTTGAAGCAAATCGTGTGAAGGATTGGATA
AAAGCAGTGCTTGAGTAATCATCCATAACGTTGATGAAGATTGCTGAGGT
AACACAGCAGCAGTAGACGACAAGCCATACTTTGATTGTTGATCTCTTGT
GCAATGGAGAATAGGCTTTGTATGGTCCACTGAGATCGAATTGCGTATTG
TAGAACGAAGGAGCGATTGTGATGCAAGCTTCTGGTAGAGGTCCCATTGC
AGCTTCANACATGCTTCTGGTAGTGGTCCCATAGCAGCTTCAATGGTTCG
CTTGTTGAGGAATCTACATCGTTGACATGACTTCTTGATTAACTTTACAA
GTGAACGTCCTTCAATGATGTAGGTCTTTTTCATGATGTGACGTAATGTT
GTTTCGATGCCAGCATGTTGCACGTCTTTGTGGTTCCAGTGGATATCTGA
TGCAATGCTGAAGGCGACTGGTGAACTCTTGTCGATGACAGGAACGCAGA
ATGTTGATGAAATGAGGTCCAACATTGCTTCTGTGTATCGA Coding sequence (CDS) from alignment at scaffold_117:367837..369127 >TCONS_00046858 ID=TCONS_00046858|Name=TCONS_00046858|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_117:367837..369127 (Clytia hemisphaerica)
CACATTTTTAGCAATATTTCCCAATTCTTTCATGATATCACAATCATCCA
CAGAGCGAATTAAAATCAGGTTACGTACTGATCTCCTTGTTTCTCGTGAA
actttttcgttttcgtttcgATATTTGACAATGACACAACGAACTTTGTC
ATCATCACCAACTTCAACATTTGATATGATACCATACGTGTACGATTTGG
ATAGTTTCGATTCGACCTTGTTGAATAGAACAACATCACCAATTTGGAGG
TTTCGTTCGTGGTTGAACCATTTTGATTGTGACATGAGCTTGGGAACGTG
GTTTAGTAGCCATGATTCGAACCAAGCATCATAGATTTTCGAGTTTTGGT
CCAGTAATTTCGTTGGATTAGATGAGATTATGAAATCACCTGTTGGACTT
CGGTCATTGTTGCGTCCTAGAAGGAGACGATTTGGAGTGAGAAGGTCCAT
GTTCTCCACATCGATGACATTTCCAATAGCAATGGGTAAATCATTTATAG
AGTTTGAAATGATTGCAGTGATTGTCTCCCATTGTAGGATTGATAAACGT
TCGTTTTGGATTGTTTTTTCCAAAGATGTGTTGACTTCCTTGATTTTTCG
TTCCACTTTTCCATTCATGTTATGTGCGCCTACAGGACACGTTTGGAAGG
TGACATGATGATCTTTGTGAAGTTTGGATTGGATGTCCTTGAAGTTGAAT
CTCATGTCCTTGGATCCTTTAACAAGTTGAGTTCCTTCATCACAGTAGAC
TTGGTTTGGAAAACCATATCTTGAAGCAAATCGTGTGAAGGATTGGATAA
AAGCAGTGCTTGAGTAATCATCCATAACGTTGATGAAGATTGCTGAGGTA
ACACAGCAGCAGTAGACGACAAGCCATACTTTGATTGTTGATCTCTTGTG
CAATGGAGAATAGGCTTTGTATGGTCCACTGAGATCGAATTGCGTATTGT
AGAACGAAGGAGCGATTGTGATGCAAGCTTCTGGTAGAGGTCCCATTGCA
GCTTCANACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046858-exon-scaffold_117-1491911889:367837..369127 | TCONS_00046858-exon-scaffold_117-1491911889:367837..369127 | Clytia hemisphaerica | exon |
| TCONS_00046858-exon-scaffold_117-1510915933:367837..369127 | TCONS_00046858-exon-scaffold_117-1510915933:367837..369127 | Clytia hemisphaerica | exon |
| TCONS_00046858-exon-scaffold_117-1575043694:367837..369127 | TCONS_00046858-exon-scaffold_117-1575043694:367837..369127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:367837..369127 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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