TCONS_00046889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046889
Unique NameTCONS_00046889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2190

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046889 ID=TCONS_00046889|Name=TCONS_00046889|organism=Clytia hemisphaerica|type=transcript|length=2190bp
TTATTCATCGATCACGGTCaaaagcatagatcaatgttttgataaGCGAG
AAGCAATAATGGCTGGTGGTAGCTGCAAGAAGAGAATTTTCCTGTTCAGA
TTTTTGTTGGGCGTTTTAATTTTAActtgatttctaattttaaatCATTC
CTGGCTTTTCTTCTGATTGTGGTAtgaaaacttcattttattGACAATGT
ATGTACTCCAAATACTGATTGCGGCAGTTGTTTAAGATCAAGTGGAAGTT
GCAGTTGGTGCAAAGATGAGAACTTTACATCAACAGTGCAACAACCAAGA
TGTGATCTTCCCTCTAACTTGAAAGATTGTAAAGATATAATGAATGTACA
AGGTGAAGTGAAGGTAGTTACGAATGATGCAACACTTCAAGTTCGTCCAA
AAGAAGTCAAATTAAAGCTTCGACCAGGTGCACCCAAAACATTTAGCATC
AAAGTGACACCTGCAAAGAACTTTCCAGTCAACCTTTATTACCTTATGGA
CATGTCAAAATCTATGGAAGATGATTTAGAAAAACTACAATCGCTCGGCA
CAAAAATTGCTGCTGAAATTGGAACAATCACGACAAAATACAAGCTTGGT
TTTGGCTCTTTCGTAGACAAGACGGTTGCACCTTTTATACAAGTTAATAA
AAAAGATCGTCCTTGTACCCGTGCAAATGACAAGAACGGGAATTTCCAAG
GGTTTTGTGTACCTACTTTTGGTTATCGACATGTCTTCAATTTTAGTAAA
GATGCTCAAGCTTTTGAGGCTGCTGTGAAAAAGCAAATTATTTCAGGAAA
TTTGGACACCCCAGAAGGAGGAATGGACGGTTTGATGCAAGTTGCTACTT
GCGAAAAGATATTACAATGGCCTGAAAAAGATAGAGCTCGGAGGCTTGTT
GTATTTGTTACAGACGCTCTGCCTCATATCTCAGGAGATGGAAagTTGGG
TGGTATTGTTATTCCAAACGATGGAGAATGTCATCTAGATGCTCAAGGGC
GCTACACTGAATCCAACACAATGGACTATCCATCACTATCACAAGTTCGT
GCCAAACTGAAGGAGAACAAAATTATTCCAATCTTCGCAGTGACAGGAGA
TGTTGTTGATACGTACAACAAAATCAGTAACCAATGGAAAGATATCGGAT
CATCAATTGGTGAACTATCTGGAAACTCTGACAACATCGTCAATTTGATC
AGAGACAGTTATAAGGCTATTCTCCAAACAGTTCGTCTATCTAATGATCC
AGTTGACAACATTCGAGTGGAGTACAAACCGAAAGTGTGCGACTCACCAG
ACGGTGATGATACATGTACAGATGTGAAGATCGAGCAAGAAGTCGAGTTC
TCCGTCACTCTCACTGCCACCCAATGTCCCATCGACCTGTCCAAGAAAGG
TGACCGAACCTTCAACATCAACATTCCTGGATTCGGCGAGGTCAAGGTTG
ATGTAGAGCTCATCTGTCAATGCCCGTGTGAAACGCTACCTAACATGCGC
GAGGAAGATTCTGTCAAATGTAACGGTACTGGCACATTCCAATGTGGAAT
TTGTTATTGCCCTGAAGGACGGTATGGTGAACAATGTCAGTGTGATGGCT
TCACAAAACTCAGCGATAAAGAGTGTAAACCAAACAACACCACAGAGACG
GTGTGTAGTGGTATGGGCAATTGCGTCTGTGGAAAATGTGTCTGTCATAG
ACAGGACTTACCGACAAATATTGTGAGTGGTAAATATTGTCAATGTACAA
ACTTTGGTTGTGATTATCATAAGGGAGAAGTTTGCGGTGGTGCTGATCGT
GGTATCTGTGTTTGTAACAAATGTGTTTGCAACGAGCCTTTCATTGGTCA
AAACTGTGGAGAAGTCAACTGTACAATCGCTGACAAACAATGTAGCGATA
AAAATGGCGTCGAGTGTAGTGGCAAAGGAGAATGTAATTGTGGTATTTGC
AATTGCAACGGAGGCTATGAAGGAAAACATTGCGAAAAATGNTTATCtga
cccgatgtagaaattttcttccgacacgctaaagctctgaaggtcgggaa
aattttcaacatctggaagaaatacattacgAAATTTCGCCTGACCgtgt
aattttttagaaaaatgggcccgagtgcaatttggacagggaaggtgtca
tggccgacaaaatttgggtcagaaaaaacttcaaaaggtt
Run BLAST on NCBI

transcript from alignment at scaffold_118:130012..144113+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046889 ID=TCONS_00046889|Name=TCONS_00046889|organism=Clytia hemisphaerica|type=transcript|length=14102bp|location=Sequence derived from alignment at scaffold_118:130012..144113+ (Clytia hemisphaerica)
TTATTCATCGATCACGGTCaaaagcatagatcaatgttttgataaGCGAG
AAGCAATAATGGCTGGTGGTAGCTGCAAGAAGAGAATTTTCCTGTTCAGA
TTTTTGTTGGGCGTTTTAATTTTAActtgatttctaattttaaatCATTC
CTGGCTTTTCTTCTGATTGTGGTAtgaaaacttcattttattGGTATGAA
AACTTTGTATTcattttattgattagataTTTTTAATTCTTAATGTTTCG
ATCCTTTTGTTGCAATTTCAAAAAGGTTTACAACAGCTCCAAGAATTCAC
ATCGTGTCAAGAATTCTGCTAACAGGAATGTataattcacaaaattttga
aaattctaatcATTAATTCAATCAATTCAATTGTATTTTTACCATAGATA
GAAAAAACACCTTGTGAACCAGTTTTCAGAGCATGGCAGAAATCATTGAG
ATCTCGAGGGTAGAGATTGCTTACTTTTCAAGGGCagggacaaaattttg
ataatctACAGTTCAGGggcaaaatcattgaaaactgGCTATATTTACCT
GTTTTTCTGCCTTTTTTTGTAGTGGGAAACGGATCTTAGGGGCAGAGTTT
TATGTTGGAAATTTTTCCTTGGGGGCAACCACgacatgctctgaaaactg
GCTTGTGAATACTTCTAGATTCTGGGCTGGTGTGAATAcccaggcggtgt
caatcgaactgttcgattatcgaactaatcgaacttcatccaaccctatc
gaacgatagctgttcgattaccgaacccaatcgaacacctatcaAACCGG
GAAAACTTTCATAAAGTTTGATGACTGTTCGATTAAATGATTATAGTTTG
ATCGCAGTTCGATGAATACGATTGAAGTTCGACAGTTCGATTAAgatcga
tgaagtttgattaaaTCGATTTATTACCTTGCCgcagaattttttattta
tattccaaGGGGGTATTGGCGGCCGTCTACAGGCCATCCTCGCGGGCCAT
CCTCGCGGGCCATCCTATATCTATCAAGCTGGATCTTTTACAGGCTCTTT
GGttgttaatttgtaaaaaaatgatttttattactttctttaaaaaaagt
gtcatctctattatttcaaatgaacaataatgagtgaagcatacgatgcc
tgtgttttgattaaacaacctcgtaattttctgaaaggtaaagaaaagta
gaatcaatccAACACAATCATCAAACAACATCGAATTTTCATTGAACCAC
ATCGAACTTAGATCAAACTCATCGACCATCAATcgaatttcatcgaataa
agaacactcatcgaactaaatcgaacttatcaagaaattttcgtaaagtt
cAATAGCTGTTCGATCGGGTTCGGNATTGATTAGATATTTTTAATTCTTA
ATGTTTCGATCCTTTTGTTGCAATTTCAAAAAGGTTTACAACAGCTCCAA
GAATTCACATCGTGTCAAGAATTCTGCTAACAGGAATGTataattcacaa
aattttgaaaattctaatcATTAATTCAATCAATTCAATTGTATTTTTAC
CATAGATAGAAAAAACACCTTGTGAACCAGTTTTCAGAGCATGGCAGAAA
TCATTGAGATCTCGAGGGTAGAGATTGCTTACTTTTCAAGGGCagggaca
aaattttgataatctACAGTTCAGGggcaaaatcattgaaaactgGCTAT
ATTTACCTGTTTTTCTGCCTTTTTTTGTAGTGGGAAACGGATCTTAGGGG
CAGAGTTTTATGTTGGAAATTTTTCCTTGGGGGCAACcatgacatgctct
gaaaactgGCTTGTGAATACTTCTAGATTCTGGGCTGGTGTGAATAccca
ggcggtgtcaatcgaactgttcgattatcgaactaatcgaacttcatcca
accctatcgaacgatagctgttcgattaccgaacccaatcgaacacctat
caAACCGGGAAAACTTTCATAAAGTTTGATGACTGTTCGATTAAATGATT
ATAGTTCGATCGCAGTTCGATGAATACGATTGAAGTTCGACAGTTCGATT
AAgatcgatgaagtttgattaaaTCGATTTATTACCTTGCCgcagaattt
tttatttatattccaaGGGGGTATTGGCGGCCGTCTACAGGCCATCCTCG
CGGGCCATCCTCGCGGGCCATCCTATATCTATCAAGCTGGATCTTTNGAG
GGGGTGTTGGCGGCCGTCTACGGGCCATCCTCGCGGGCCATCCTATATCT
ATCAAGCTGGATCTTTTACAGGCTCTTTGGtcgttaatttgtaaaaaaat
gatttttattactttcttttaaaaaagtgtcatctctattatttcaaatg
aacaataatgagtgaagcatacggtgcctgtgttttgattaaacaacctc
gtaattttctgaaaggtaaagaaaagtagaatcaatccAACACAATCATC
GAACAACATCGAATTTTCATTGAACCACATCGAACTTAGATCAAACTCAT
CGACCATCAATCGATTTTCATCGAACAAAGAACACtcatcgaactaaatc
gaacttatcaagaaattttcgtaaagttcgatagctgttcgatcgggttc
tgtaatcgaacagctattgttcgattttgttcgataaagttcAATGtttc
gataacgaaaatcggttcgatagggttcAGTTGACACCGCCTGGGAATAC
TCCTTTAGTTTATACATAGTATTATAAGTAGGCATACACGGCGGTCTATt
gcataactaattactccacacttCAGTGGGTGCAAGTTAAACAAGCGGGA
AATTAGATACTTACTTCTTTGTGTATCACAAAGNTTTATGTTCAAATTTC
AGTCCATTGAGTCGCATGTTATTGATCTCTGACCATTTATACCTTATTGC
GGTATATATTCAATTTTGTGGGTTTTGAGGAAACATGTTTCGCGTGTATC
AAATTTCACAATTCATTAAattgggcattttcaaaaagtgggaataaaag
caagaaaatgactgattttgCTTAAAACAAAACGTATAGGTCTAAACATA
CTAAAGATAGTAACCAAACTAGTAACAAAACTAGTGACAAAAATGATAAC
TAAGTGtaacaaataagtatttttcgattttcggtctattttgaaaattt
ttcatgtgtatttaatttcgcgaggtattcaattttgcaaaatttgacct
aaaaatcgcaaaaatcgTACCCGCAAAATTTTTNTAACTTCTCTTCTGGA
CACCGGACaaagtttgtttaaaaaaaaatgggtGTGCAGCGAACGCACCG
GGCTCATATCAGGTTTTGAGATTGTCCAGTGTTAAAAAGTATCCTCATCC
AACATCCAACACCGGGCtttgcgtgtccggtgttcgaaAAGTCTGTTGCG
TCAGCAGGGTCGTNTCAAAATTTGAcctaaaaatcgcaaaaatcgcaaaa
atcgTACCCGCAAAATTTATTACCAATAAGGTACTCTGTTGAGGTCATTT
TGAAGAAACTGAACATTATCTTGACTGGACACTTCTTTCAGCAGTCTTGT
ATCGTCCGCAAATGAGGACAGCACTGCATGATAAATATGCATGATCGCGG
CCTAACATTCTCCCAAAAAATAGCATGCAATAACGCTGCGAATCTTCCTG
CGCAACATCCTATAAAGTATTAGCTCGAGTATTAGGGTTTAATTGCCATA
ATATGGATGAGCAGAAAATTTCTGGTCATAATGGGTGGAGTAATTTTATA
TGGTCAATACTTTTAAATGTCTGGTTGAGATTTTGGGGTTGGGTTTGAAA
ACAATGTACATTTTCCACTCTCGANTCTGCGTCAGCGTTGTCAATTTTCA
ATTGACTCAATTTTTCCCAATAATTTAATTAAGTGGTTCAACAAGGAAAT
CTCATTCAAACAGATTCAAAAATCATTNGTTTTAAATGTCTGGTTGAGAT
TTTGGGGTTGGGTTTGAAAACAATGTACATTTTCCACTCTCGATAAAACT
TTTTAAGTTGGATAAACATATAAATGGTAaactaatttttgcattttgtg
AATGACACCTAAAtctataaaatctttaaaatttcacaaaattttgtctt
ctgattttagaatttaatttatttaaaaatgaaaatagacATTATTTGGC
TCACTCTTTTGCTGGTTAATATTTTCTCCATAATTCATTCAGATGGTAAG
TGTTTACTTTAATTAGATTCATCAAATTTTACATAGTTTTAGTTATAGAC
TTTGGTTTACTTGGTGTGCCAGAAATAAGTTACATAGTCACTTTGTCCTG
CTGGGTATcctgtattttcaaaaattcattagAATTATGCTCAAAAGTTG
cgcaaaaatgcaaaaatacaaCCAATGACATGAGGAAAATGATTGATTAA
TAAAAGAAGATATtagataatatttttttgtaattttcccaTCAAATCAA
TTTATTAATAGGGGGTTCTGTAAGCTGGGTTTTACAGTAACCAACTATAC
TACTTTCTTACGCAGACAATGTATGTACTCCAAATACTGATTGCGGCAGT
TGTTTAAGATCAAGTGGAAGTTGCAGTTGGTGCAAAGATGAGGTATTCAT
TTAATTCATTCggtttttctgtaaaaaaaattactacagtctatttcaaa
ttagctggtacatgttttttttttaagaaacacacttttaagaaacatga
ggctcagaatgcctaaaatctaagaaacatctaagaaacatgctgaggct
gagaatgagaaaataacattttttaattcggtttcttttaagaaccttcc
aattcagccttccatgaggctgattatgtcaaaaagtttagaaacatgta
agaaacatttaaggctcaaaaggccgatttcttaggaaacattgaggctg
cttgatAAAAccagtttcttaaaaaaaaacatgtagtgtttttcaaactt
caataacttttgatagaatttgaattagtttgcagttttgtgcttgttaa
aaagataattcggagtggaatattatcaaaaaagaatggatggaaaaaca
aagatatgaaaaatgaagaagaagaaatgttatgatcttcatttttgtat
cagaatctcttcaatcttagaataTCATAGATGCAAAGAAAGATACAGaa
aaaaatacagcttaaaactttgccctggttgacttaaaaaaggactcttt
tttgttgctttttggaCTAAATCTTTgatggaataaatttttttgaaaat
ttttttaacattaatgatgttctaagatcaaagaatcactcgtgtgaaaa
ggataattatagcacaatcattgaagaagttgatttcttcctcttcattt
tctatcttcattttctgatcttttttgagttttttctttatgacaATAAT
CCACTcttgtttgtcttttcaacaaacacaatcgctacttaattcaaatt
ctatcaaaaagttattgaggtttgaaaaaacactgccagctaatttgaaa
tagactttacaTTACTGGTATTATTTCACAAAATGTACTTGAGNCGTCTT
TTCAACAAACACAAAATcgctacttaattcaaattctatcaaaaagttat
tgaggtttgaaaaaacactgccagctaatttgaaatagactttacaTTAC
TGGTATTATTTCACAAAATGTACTTGAGAAACTATGAGAAAAGAACAAAT
GATGAATTATTGTTATAAATTCACAGTGGGGCAGATAACAGAAAGGAGAA
GTGAGGTGGTGGATAAAAGACAGTGATTATCCATGGATAATGATATTGCC
ATTCTTTCTTGCCTCCAGCAAGATCCATTGCATCTTTCCCAGCTTAAGTT
CAGATTCTTAAAGTCGTTTTCAATTAGTAACTTATCCATGTTTTTTTTGG
TTTCTCTCTGGGCCGTTGATATGGTGATGTATAAAAAAACCACACTCTAG
ATTTTGCTATTTTATTAGAAATATGGGTTCGATGTAGGCTTAGGTAGGCA
ATGTCAGCTTTTTGTTGAAGAATGATGTTTGTAGCTTGTTTTTAGTGATA
ATAGTAAGGGTTCTGCGATGGTTGTTGTCCTCACTCGTATCAAGGAGGCT
GCATaggtatttgtattttttttcagagaTTGTGGTTTCTGTTTATTATA
AATTTGTCTCTATTCTTGACTGTTATGTTCTGATAGATGATCATTGACGG
TCGTTGTGATTTAGTGGTCTGGTAACTGACTTTTATTATTAAGTGGTTCA
AGAGCCTTTCCTTTGTAGTATATGTATGAATTGGGTAAGCTATAATACTT
TTTGCTGAGTATTTATCCAAAAAAATCGTTTATGTTTGAACAGcagcaaa
ataaattttaacgatgttgttgttttttttctcttactAGAACTTTACAT
CAACAGTGCAACAACCAAGATGTGATCTTCCCTCTAACTTGAAAGATTGT
AAAGATATAATGAATGTACAAGGTGAAGTGAAGGTTGGTAGTCCTCCTtg
ataaaaccttttttttttaatgaaaaacttcaataaaTTTGACTGTAAAT
TTAtggtgttttattttatttcttctgTCACATTCACAGGTAGTTACGAA
TGATGCAACACTTCAAGTTCGTCCAAAAGAAGTCAAATTAAAGCTTCGAC
CAGGTAATGCATTTTGAGCACTGATTTTATGCAACTCCCATATCATCTCG
ATCATCTTTGTATCACTGTTTTCTAGCTTGGACATCAAATCAGAAACGTT
GTTCTCCTTTGGTGGNGAAAAACTTCAATAAATTTGAGTGTAAATTTatg
gtgtttttttatttcttctgTCACATTCACAGGTAGTTGCGAATGATGCA
ACACTTCAAGTTCGTCCAAAAGAAGTCAAATTAAAACTTCGACCAGGTAA
TGCATTTTTAGCACTGATTTTTTGCAACTCCCCATATCATCTCGACCATC
TTTGTATCACTTTTTTCTAGCTTAGGCATAAAAGTTTTGAGAATCGACCT
GTAAGGACATAAAATTAGAAACGTTGTTCTCCTTTGGTGAAAAAAACCAA
AGGGCTCTGGTGTTCGCAAGAGCTAAAGGTGTTTCTTTAGAATGTTGAAA
AGTAGAAGGATTTCCCTCACTTGAAGGATTAGTTTCCACAGGAAAGgaca
tttttgtaatttttgtaagGTTACTTGTAGCTTTCACTTAAGATTTTTGA
CTGCagctatttcaaaaataattttatattcTGGAGCTCTGAAAGTTTAG
CTTTAAGCTAAGGTGATTTTTGTGGCTAGAAGTCACTTTCAATTGATAAA
TTGTAGCATTTAATTTTGATCTTGATGAAATTTGATGTAgggttcaaata
tttttcaagtagaAAGTCTCTGGAGGTGCTATTGGGTCTCCAGAAACAAA
CTatagaaatttttgaaagaaatgtgAATTTTTGTGGTAAACTTAAGACC
TTAAAGAAACGTGGTATTTAAACCATTATAGTGTGAATACCTTACTTTTC
CAAATCCCCAAACACATACATTTAAGAGAAGCCCAGATCTAACTCAGAGA
AGGAATAAACATCGTGAGTGTGAATTATTGTGACTAAAAAAGAAACTGGC
TCTATGAAAAATAATggctttttgctaaaaattcatattttttgacAGGA
TTTTCGACCTTTGAGCTACTTTCTTTACGAATTGGTTAATTTGAGGAAGG
GATGTAATGGATGGATTTCTGAAAACAATAATGTTAGCCACAATATGTCA
CCTGTATGATTAAAAGCAAACTGCAAAGATTCTTATAGGCAATGAatttc
taaactatttattaaGGAACTGATATAAATTGAATTTAAAGAACAAAGTT
TCCAGAGCTAATTAGCCACATTTAATAACAATATTAGATAAATGGTTTtg
gttatcaaaataaaagttttttgctagtttcaTCGGACAAAGTCTTGTAG
GTATCTATTATCTAAAGATCTAAAAGAATTTCTATTCATTCAATATTTAT
TTAATAATAAGTATGTTTAGCTAATAgggaatattttaaaattctaCATT
TATTCTTGATTACCACTTTCAATCACCTCTTTAGTGTGAAACAGCTAATG
TTGTGTATCAATAGATCTCTATTTAGTCATAGATGAATTCTTAATGggtt
attttcaatttattgaCTTGCGCGAAGGAATGTGGCTCAAAATACTTCTT
CTTAAAATATACTTTATTAGCCACAAAACATCACAAAAGGACTTTAGTCA
TGGATCATAGTCAATTCATACAAAAGTATAGTCTTCCTAGGTTAGATTTC
CCTTGAAATCACATCTTTAAATAGGCTGGTATTTCTTTCACACATATGAA
AATATCAGTATTTTTACATATATCAGCGTATTCTAAGCTATCATTTGAGC
ATTTCAATTAACTTATATGAATTGTAAAACAATTGTTATTAGCATTTCTA
TTTTCacttcaaaataaatttcagcTTACTTCGAACCACAAAATTTCACT
CATCTCTTTAAAATTTCCATCACATTTTCAGAGCATTTCAACAAGCTAAT
CTACATAaccttttgaaacaaaaagtcaaagtgaaattttgagGCTACGT
tgaaaaaacacaagaaaacctTAAATATTAACCACAATAattcacaaaaa
agtttttcaaactaCTAACAGGCGTCAACCTACAGGGACAAGCACTTTTC
TAGAAGGGGTCAACCTAGGACTTACCATTTAATGAATTATAATGGTTTTT
CTAAAAAGAccactttttgtaaaattctAAAATGTCCTTTCCTGTGAAAA
CTCATCgaaggaaaaacattttctgctgtttcaaataaatttttatgcAA
ACACCTATTATTAGCATAAAAAACTTTTATGTTCGTCCGCTTGAAATCAT
CTAATTGAAATTTTGGGAAGTTGCAATATAATTCTAAACATTTCGTACGG
ATTTACTCAAGCCAGTTAAAACACTGTATTACAGTGTGTTATTTCTTGAA
TTGTTTTCAAGAGAATCCAGTCAATCTTATTACTGGAAAATGATTAATTG
AATAAATTGAATGCAGTATTTTGCcatcaaatattttgaatgGTGATTCA
AAGCAGTCTTGTTTTGTCATTTTGCCTCGATGGCTGCTTCTTTGCCATTT
ATCTAAGAAATACTTgactttttaacaattttcagGTGCACCCAAAACAT
TTAGCATCAAAGTGACACCTGCAAAGAACTTTCCAGTCAACCTTTATTAC
CTTATGGACATGTCAAAATCTATGGAAGATGATTTAGAAAAACTACAATC
GCTCGGCACAAAAATTGGTAATTAGAACATACATTTATTGAGAAGATTGG
AATTTATACAAAGAAACAATGAGAAAAATGTTGATTATCTTGATTGGAGA
CTTTTTAGAAAAGAATCAATTACTATTTGAACTAATATGCATTCGAAGAA
CAAAATGAAGTTAATAGGTACTATTATATAATTCAATCAATTATTTTTCA
GCTGCTGAAATTGGAACAATCACGACAAAATACAAGCTTGGTTTTGGCTC
TTTCGTAGACAAGACGGTTGCACCTTTTATACAAGTTAATAAAAAGTAAG
CATGGTCGTTTGTACAACCTTTTTGAACCTACCCcgatggaggtcctata
aattattcgttcgttcgttcgttcgttcgttcgttcgttggtTCGTtggt
tcgttcgttcgttcgatgACGAGCCCGATTTTCGATAAAAGAATTTTGGG
CCAAAATAGAGACACAATAACAAGCTTTTTTGTtgaaagctttttttgta
aactcCTTTCCTTAGAGTCATTAACTGTTTGTCGAGAATTCTAAATCAAT
GATATAAAAATAGTCTAAAGCATCAATGCCCAAAAATAAGGGTTCCAAAT
TCATCTATGGTTTTTCTTGTGTAataaatttaaacaaaaaatgaaatttc
atgTAATCTTTTTTCTTAGAGATCGTCCTTGTACCCGTGCAAATGACAAG
AACGGGAATTTCCAAGGGTTTTGTGTACCTACTTTTGGTTATCGACATGT
CTTCAATTTTAGTAAAGATGCTCAAGCTTTTGAGGTTAGTGATGtttgat
gaatttaaaaaaatatcaggCTGGTGAAAGAAGTTTTGCAACTTATGCTG
AGCTAGGACAACATCAGATTATCAAACAAACTTTATAGCTTTCTTTTGCT
CTTTCAGGCTGCTGTGAAAAAGCAAATTATTTCAGGAAATTTGGACACCC
CAGAAGGAGGAATGGACGGTTTGATGCAAGTTGCTACTTGCGAAAAGGTA
ACTTGTAATGAAATACCACCAGGAACATTGATATTCTACTATTTCAGATC
ATTGGTTAACAAATTAGCTCTACAAGTAGAggatattttcttttgattag
gAAATCATTTTAGACTCGATCAAAGATACAAAATGTGTTTGCCTTCAGCa
tcttttttttaagttttgctttttttacTCAACAGATATTACAATGGCCT
GAAAAAGATAGAGCTCGGAGGCTTGTTGTATTTGTTACAGACGCTCTGCC
TCATATCTCAGGAGATGGAAaggtaaaaatatttgtttgctgATAAAACT
CGCATCCCCTTCTTTGTTATCTTGTACGTGGATGAAAATGTAACGCTCAA
TTATTTAATCCCCATTCAAAGTTAGGACAACTCTtgcattaaaggtttta
ttttttacataagtgttttcgtttcatatcagacacatatctcatatcag
gacagtgtcttacTATtgtgttatattatgctgatataagcaaaaaaaat
attcttcccctctttctgaccaatcttactccacatctgtgtcaatccaa
tgtgaaaaagcttataaattaaaattgatgagtaagaaaacgatatttaa
aaacaaaacttttaaggcTCTGTTTTGCCTGTTATGatctttttttaact
tttttcaccCTGCAGTTGGGTGGTATTGTTATTCCAAACGATGGAGAATG
TCATCTAGATGCTCAAGGGCGCTACACTGAATCCAACACAATGGTAAGAT
TTTGAACAGTCTTTCTAGCTATATCTTCTTCTCATTGAAAAATTTCTCGT
CCTCTATAATAAGCAAGAATGGAACATCTTAAAATAGACAACAAAAACCT
TTATTTAATGCTCTCCCTactcatatttttgaaaaattctaatGTCTTAG
CGATTTTCCTGTATGCAGGCAATTTTCCCAAAGATTTCTCTTATTTTTCT
GTATTGTGAAGACTTTGGTGTATCTATCTTTCTCGTATATTTAAACATTT
TAAGGAAGCTCCTTGATTGTATTTTCCGAGGGAAATTAATTGATTCTTTC
CATTTATTTTCCAAGAAGGTGTTTCTTTGATATTTCAGAATAAGCACTAC
TCTCTCGAATAATGAACTTAACACTCAGAATCATATGAATTTTCTACTAG
CTATACTCAGGGCCCATATACAGCATCTCACTTAGGGTTAGCTGTATGAC
TGTAATGAATGCTTTTTTGTCAGGACTATCCATCACTATCACAAGTTCGT
GCCAAACTGAAGGAGAACAAAATTATTCCAATCTTCGCAGTGACAGGAGA
TGTTGTTGATACGTACAACGTAAGTTTTTACTCATTGTTGTAGAATCTAT
TTTTCCTCTATTCAGTGTTGAGTGTATTTCTTTCTCTTGTATCTGATACC
AGTGCACCCTCGATTCCATAATACAAAACTTGATACTCTAATTTTATGTA
ATTTATAAAGCTGTTTACATTCCCTTACTAGCAGAGCTCTCGCTATATTT
CAAGATTGAAACTCAAAACAGATGTCGTTCTCGCTTTCCTTAGAAAATCA
GTAACCAATGGAAAGATATCGGATCATCAATTGGTGAACTATCTGGAAAC
TCTGACAACATCGTCAATTTGATCAGAGACAGTTATAAGGTAAAGAAGAG
AGGGAACCTTAACATTCCAGAAATTTGGATGCTTCTTAAATGAGGAATAT
CACTAGCTACTCTCGGTGTATAATATAAGTAATAAGTTGGCtatttttga
ttgaattataaCTGAACATTTGTCAAGACTGACCAAGGTGGTGCTTAACT
TACTCTTCCATATAGCCTAGCTGCTTTTAAATGAAGGTACTTTATCCTAG
TTTTCATCTCCCGTTCTCTGTCAGGCTATTCTCCAAACAGTTCGTCTATC
TAATGATCCAGTTGACAACATTCGAGTGGAGTACAAACCGAAAGTGTGCG
ACTCACCAGACGGTGATGATACATGTACAGATGTGAAGATCGAGCAAGAA
GTCGAGTTCTCCGTCACTCTCACTGCCACCCAATGTCCCATCGACCTGTC
CAAGAAAGGTGACCGAACGTAAGTTCCCTTTAACCAaagtcttttttcat
tttacaatttgtttttacttttaatttgaattttcaacGGTGGTAAAATG
ACGCATCCTCAGCCTCAAATAGCAACCGTTTGTACCAACCATTTTTAGCA
ACGTTACTTGTCCGTAATTAAGATAgtccaaattttgtttttaacttttc
atcAAATTGATTTTAGCTTAGGCTTtattagaaatttaaaaatccgTTGT
AAGTTTTCTCACACCAGAAGGATGATCTCAGAAGAGCATTTTATTTACTC
TTCTTCTTTTTAGCTTCAACATCAACATTCCTGGATTCGGCGAGGTCAAG
GTTGATGTAGAGCTCATCTGTCAATGCCCGTGTGAAACGCTACCTAACAT
GCGCGAGGAAGATTCTGTCAAATGTAACGGTACTGGCACATTCCAATGTG
GAATTTGTTATTGCCCTGAAGGACGGTATGGTGAACAATGTCAGTGTGAT
GGCTTCACAAAACTCAGCGATAAAGAGTGTAAACCAAACAACACCACAGA
GACGGTGTGTAGTGGTATGGGCAATTGCGTCTGTGGAAAATGTGTCTGTC
ATAGACAGGTAAGCTGGTGTGCTCTTCTCTCTGGctacttttcttcttct
ttttcaatttttaactcAACGTGAACCAAAAATTTATACATTCAGCAGCA
TTACAGAATCCcaagttcttgagttatgaaCGAGACAACGTATTTGTTTC
TGACTACGTACGTTGACACATTATTTGCATCTTTGTGAAAATTCTCATTC
ACTATCATGCTCACCATCCAGCTTTTCGCCTCATTTTTTTCACAGGACTT
ACCGACAAATATTGTGAGTGGTAAATATTGTCAATGTACAAACTTTGGTT
GTGATTATCATAAGGGAGAAGTTTGCGGTGGTGGTATGTGTTCAATCTTC
CtctcttcaaatatttttttcttcttattctTAATCAGGAGCACTTCCAA
ATGCGATTTAGTtgttttttgagcaaaatacGCTCAATCAAAGATTATTT
TGAATTCATCCTTTTTATTATAGCTGATCGTGGTATCTGTGTTTGTAACA
AATGTGTTTGCAACGAGCCTTTCATTGGTCAAAACTGTGGAGAAGTCAAC
TGTACAATCGCTGACAAACAATGTAGCGATAAAAATGGCGTAAGTTAGAC
TCACGCCTTGTTATCTATTCAGTCTCAGAATGACATAATTTCCTCTATCG
TATAGTGTGAATTTAAAAAGGGAGTGGTTGTTGCCCGGTTTTATAGAATT
CCGGTCTTACTAACATCGACTGTCATACCAAAATCGCCTCTAGTATCGct
ttttttccaaataagaGCGTGAATTATGTTGAAAAATATCGCATCCTACT
TTATAAAAAATAGTTATCATACTCTACCTCTTTGTATCAAAAATTGTATA
TGATTTATTTACCTTCATAGGTCGAGTGTAGTGGCAAAGGAGAATGTAAT
TGTGGTATTTGCAATTGCAACGGAGGCTATGAAGGAAAACATTGCGAAAA
ATGNTTATCtgacccgatgtagaaattttcttccgacacgctaaagctct
gaaggtcgggaaaattttcaacatctggaagaaatacattacgAAATTTC
GCCTGACCgtgtaattttttagaaaaatgggcccgagtgcaatttggaca
gggaaggtgtcatggccgacaaaatttgggtcagaaaaaacttcaaaagg
tt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029918XLOC_029918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046889-exon-scaffold_118-1491911889:130012..130204TCONS_00046889-exon-scaffold_118-1491911889:130012..130204Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:130012..130204TCONS_00046889-exon-scaffold_118-1510915933:130012..130204Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:130012..130204TCONS_00046889-exon-scaffold_118-1575043694:130012..130204Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:134527..134603TCONS_00046889-exon-scaffold_118-1491911889:134527..134603Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:134527..134603TCONS_00046889-exon-scaffold_118-1510915933:134527..134603Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:134527..134603TCONS_00046889-exon-scaffold_118-1575043694:134527..134603Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:136402..136494TCONS_00046889-exon-scaffold_118-1491911889:136402..136494Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:136402..136494TCONS_00046889-exon-scaffold_118-1510915933:136402..136494Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:136402..136494TCONS_00046889-exon-scaffold_118-1575043694:136402..136494Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:136601..136664TCONS_00046889-exon-scaffold_118-1491911889:136601..136664Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:136601..136664TCONS_00046889-exon-scaffold_118-1510915933:136601..136664Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:136601..136664TCONS_00046889-exon-scaffold_118-1575043694:136601..136664Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:139197..139328TCONS_00046889-exon-scaffold_118-1491911889:139197..139328Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:139197..139328TCONS_00046889-exon-scaffold_118-1510915933:139197..139328Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:139197..139328TCONS_00046889-exon-scaffold_118-1575043694:139197..139328Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:139513..139606TCONS_00046889-exon-scaffold_118-1491911889:139513..139606Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:139513..139606TCONS_00046889-exon-scaffold_118-1510915933:139513..139606Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:139513..139606TCONS_00046889-exon-scaffold_118-1575043694:139513..139606Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:139981..140095TCONS_00046889-exon-scaffold_118-1491911889:139981..140095Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:139981..140095TCONS_00046889-exon-scaffold_118-1510915933:139981..140095Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:139981..140095TCONS_00046889-exon-scaffold_118-1575043694:139981..140095Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:140219..140308TCONS_00046889-exon-scaffold_118-1491911889:140219..140308Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:140219..140308TCONS_00046889-exon-scaffold_118-1510915933:140219..140308Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:140219..140308TCONS_00046889-exon-scaffold_118-1575043694:140219..140308Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:140497..140583TCONS_00046889-exon-scaffold_118-1491911889:140497..140583Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:140497..140583TCONS_00046889-exon-scaffold_118-1510915933:140497..140583Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:140497..140583TCONS_00046889-exon-scaffold_118-1575043694:140497..140583Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:140977..141054TCONS_00046889-exon-scaffold_118-1491911889:140977..141054Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:140977..141054TCONS_00046889-exon-scaffold_118-1510915933:140977..141054Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:140977..141054TCONS_00046889-exon-scaffold_118-1575043694:140977..141054Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:141535..141630TCONS_00046889-exon-scaffold_118-1491911889:141535..141630Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:141535..141630TCONS_00046889-exon-scaffold_118-1510915933:141535..141630Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:141535..141630TCONS_00046889-exon-scaffold_118-1575043694:141535..141630Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:141855..141950TCONS_00046889-exon-scaffold_118-1491911889:141855..141950Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:141855..141950TCONS_00046889-exon-scaffold_118-1510915933:141855..141950Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:141855..141950TCONS_00046889-exon-scaffold_118-1575043694:141855..141950Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:142186..142379TCONS_00046889-exon-scaffold_118-1491911889:142186..142379Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:142186..142379TCONS_00046889-exon-scaffold_118-1510915933:142186..142379Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:142186..142379TCONS_00046889-exon-scaffold_118-1575043694:142186..142379Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:142675..142969TCONS_00046889-exon-scaffold_118-1491911889:142675..142969Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:142675..142969TCONS_00046889-exon-scaffold_118-1510915933:142675..142969Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:142675..142969TCONS_00046889-exon-scaffold_118-1575043694:142675..142969Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:143207..143294TCONS_00046889-exon-scaffold_118-1491911889:143207..143294Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:143207..143294TCONS_00046889-exon-scaffold_118-1510915933:143207..143294Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:143207..143294TCONS_00046889-exon-scaffold_118-1575043694:143207..143294Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:143435..143550TCONS_00046889-exon-scaffold_118-1491911889:143435..143550Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:143435..143550TCONS_00046889-exon-scaffold_118-1510915933:143435..143550Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:143435..143550TCONS_00046889-exon-scaffold_118-1575043694:143435..143550Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1491911889:143832..144113TCONS_00046889-exon-scaffold_118-1491911889:143832..144113Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1510915933:143832..144113TCONS_00046889-exon-scaffold_118-1510915933:143832..144113Clytia hemisphaericaexon
TCONS_00046889-exon-scaffold_118-1575043694:143832..144113TCONS_00046889-exon-scaffold_118-1575043694:143832..144113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:130012..144113 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.86846	7.00698e-05	1.77416	5.29479	6.19688	4.62117	7.54472	1.09971	1.98721	1.25903	0.813373	0.618977	0	0.605152	2.26781	4.1611	8.53412	3.16323	3.12491	13.209	6.75532	2.92266	8.87716	11.5519	7.63285	22.8288	33.397	66.7991	80.5171
Blast
[Close]
BLAST of TCONS_00046889 vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 381.719 bits (979), Expect = 7.414e-120
Identity = 221/555 (39.82%), Postives = 324/555 (58.38%), Query Frame = 1 
Query:  310 PSNLKDCKDIMNV----QGEVKVVTNDATLQVRPKEVKLKLRPGAPKTFSIKVTPAKNFPVNLYYLMDMSKSMEDDLEKLQSLGTKIAAEIGTITTKYKLGFGSFVDKTVAPFIQVN--KKDRPCTRANDKNGNFQGFCVPTFGYRHVFNFSKDAQAFEAAVKKQIISGNLDTPEGGMDGLMQVATCEKILQWPEKDRARRLVVFVTDALPHISGDGKLGGIVIPNDGECHLDAQGRYTESNTMDYPSLSQVRAKLKENKIIPIFAVTGDVVDTYNKISNQWKDIGSSIGELSGNSDNIVNLIRDSYKAILQTVRLSNDPV-DNIRVEYKPKVCDSPDGDD----TCTDVKIEQEVEFSVTLTATQCPIDLSKKGDRTFNINIPGFG-EVKVDVELICQCPC--ETLPNMREEDSVKCN-GTGTFQCGICYCPEGRYGEQCQC---DGFTKLSDKECKPNNTTETVCSGMGNCVCGKCVCHRQDLPTNIVSGKYCQCTNFGCDYHKGEVCGGADRGICVCNKCVCNEPFIGQNCGEVNCTIADKQCSDKNGVECS 1920
            P   KD K   NV    +G  + +  +   Q++P+++ L+LR G P+TF++K   A+++P++LYYLMD+S SM+DDLE ++SLGT +  E+  IT+ +++GFGSFV+KTV P+I     K   PCT   +        C   F Y++V + +   + F   V KQ ISGNLD+PEGG D +MQVA C  ++ W       RL+VF TDA  H +GDGKLGGIV+PNDG+CHL+    YT S+  DYPS++ +  KL EN I  IFAVT +    Y ++ N      S++G LS NS N++ LI D+Y ++   V L N  + + + + YK    +  +G       C+++ I  EV+F +++T+ +CP    KK   +F I   GF  EV+V ++ IC+C C  E +P     +S KC+ G GTF+CG C C EGR G  C+C   +  ++  D  C+  N++E +CS  G CVCG+CVC ++D    I SGK+C+C NF CD   G +CGG   G+C C  C CN  + G  C   +C++    C   NG  C+
Sbjct:   83 PRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQN--------CTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGW---RNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK--SAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCP----KKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIP-----ESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE-ICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGG--NGVCKCRVCECNPNYTGSAC---DCSLDTSTCEASNGQICN 608
The following BLAST results are available for this feature:
BLAST of TCONS_00046889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB17.414e-12039.82Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2[more]
back to top