TCONS_00046890 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046890
Unique Name	TCONS_00046890
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2202

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_118:134002..144113+

transcript sequence

>TCONS_00046890 ID=TCONS_00046890|Name=TCONS_00046890|organism=Clytia hemisphaerica|type=transcript|length=2202bp
CGATAAAACTTTTTAAGTTGGATAAACATATAAATGGTAaactaattttt
gcattttgtgAATGACACCTAAAtctataaaatctttaaaatttcacaaa
attttgtcttctgattttagaatttaatttatttaaaaatgaaaatagac
ATTATTTGGCTCACTCTTTTGCTGGTTAATATTTTCTCCATAATTCATTC
AGATGACAATGTATGTACTCCAAATACTGATTGCGGCAGTTGTTTAAGAT
CAAGTGGAAGTTGCAGTTGGTGCAAAGATGAGAACTTTACATCAACAGTG
CAACAACCAAGATGTGATCTTCCCTCTAACTTGAAAGATTGTAAAGATAT
AATGAATGTACAAGGTGAAGTGAAGGTAGTTACGAATGATGCAACACTTC
AAGTTCGTCCAAAAGAAGTCAAATTAAAGCTTCGACCAGGTGCACCCAAA
ACATTTAGCATCAAAGTGACACCTGCAAAGAACTTTCCAGTCAACCTTTA
TTACCTTATGGACATGTCAAAATCTATGGAAGATGATTTAGAAAAACTAC
AATCGCTCGGCACAAAAATTGCTGCTGAAATTGGAACAATCACGACAAAA
TACAAGCTTGGTTTTGGCTCTTTCGTAGACAAGACGGTTGCACCTTTTAT
ACAAGTTAATAAAAAAGATCGTCCTTGTACCCGTGCAAATGACAAGAACG
GGAATTTCCAAGGGTTTTGTGTACCTACTTTTGGTTATCGACATGTCTTC
AATTTTAGTAAAGATGCTCAAGCTTTTGAGGCTGCTGTGAAAAAGCAAAT
TATTTCAGGAAATTTGGACACCCCAGAAGGAGGAATGGACGGTTTGATGC
AAGTTGCTACTTGCGAAAAGATATTACAATGGCCTGAAAAAGATAGAGCT
CGGAGGCTTGTTGTATTTGTTACAGACGCTCTGCCTCATATCTCAGGAGA
TGGAAagTTGGGTGGTATTGTTATTCCAAACGATGGAGAATGTCATCTAG
ATGCTCAAGGGCGCTACACTGAATCCAACACAATGGACTATCCATCACTA
TCACAAGTTCGTGCCAAACTGAAGGAGAACAAAATTATTCCAATCTTCGC
AGTGACAGGAGATGTTGTTGATACGTACAACAAAATCAGTAACCAATGGA
AAGATATCGGATCATCAATTGGTGAACTATCTGGAAACTCTGACAACATC
GTCAATTTGATCAGAGACAGTTATAAGGCTATTCTCCAAACAGTTCGTCT
ATCTAATGATCCAGTTGACAACATTCGAGTGGAGTACAAACCGAAAGTGT
GCGACTCACCAGACGGTGATGATACATGTACAGATGTGAAGATCGAGCAA
GAAGTCGAGTTCTCCGTCACTCTCACTGCCACCCAATGTCCCATCGACCT
GTCCAAGAAAGGTGACCGAACCTTCAACATCAACATTCCTGGATTCGGCG
AGGTCAAGGTTGATGTAGAGCTCATCTGTCAATGCCCGTGTGAAACGCTA
CCTAACATGCGCGAGGAAGATTCTGTCAAATGTAACGGTACTGGCACATT
CCAATGTGGAATTTGTTATTGCCCTGAAGGACGGTATGGTGAACAATGTC
AGTGTGATGGCTTCACAAAACTCAGCGATAAAGAGTGTAAACCAAACAAC
ACCACAGAGACGGTGTGTAGTGGTATGGGCAATTGCGTCTGTGGAAAATG
TGTCTGTCATAGACAGGACTTACCGACAAATATTGTGAGTGGTAAATATT
GTCAATGTACAAACTTTGGTTGTGATTATCATAAGGGAGAAGTTTGCGGT
GGTGCTGATCGTGGTATCTGTGTTTGTAACAAATGTGTTTGCAACGAGCC
TTTCATTGGTCAAAACTGTGGAGAAGTCAACTGTACAATCGCTGACAAAC
AATGTAGCGATAAAAATGGCGTCGAGTGTAGTGGCAAAGGAGAATGTAAT
TGTGGTATTTGCAATTGCAACGGAGGCTATGAAGGAAAACATTGCGAAAA
ATGNTTATCtgacccgatgtagaaattttcttccgacacgctaaagctct
gaaggtcgggaaaattttcaacatctggaagaaatacattacgAAATTTC
GCCTGACCgtgtaattttttagaaaaatgggcccgagtgcaatttggaca
gggaaggtgtcatggccgacaaaatttgggtcagaaaaaacttcaaaagg
tt

Run BLAST on NCBI

transcript from alignment at scaffold_118:134002..144113+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046890 ID=TCONS_00046890|Name=TCONS_00046890|organism=Clytia hemisphaerica|type=transcript|length=10112bp|location=Sequence derived from alignment at scaffold_118:134002..144113+ (Clytia hemisphaerica)
CGATAAAACTTTTTAAGTTGGATAAACATATAAATGGTAaactaattttt
gcattttgtgAATGACACCTAAAtctataaaatctttaaaatttcacaaa
attttgtcttctgattttagaatttaatttatttaaaaatgaaaatagac
ATTATTTGGCTCACTCTTTTGCTGGTTAATATTTTCTCCATAATTCATTC
AGATGGTAAGTGTTTACTTTAATTAGATTCATCAAATTTTACATAGTTTT
AGTTATAGACTTTGGTTTACTTGGTGTGCCAGAAATAAGTTACATAGTCA
CTTTGTCCTGCTGGGTATcctgtattttcaaaaattcattagAATTATGC
TCAAAAGTTGcgcaaaaatgcaaaaatacaaCCAATGACATGAGGAAAAT
GATTGATTAATAAAAGAAGATATtagataatatttttttgtaattttccc
aTCAAATCAATTTATTAATAGGGGGTTCTGTAAGCTGGGTTTTACAGTAA
CCAACTATACTACTTTCTTACGCAGACAATGTATGTACTCCAAATACTGA
TTGCGGCAGTTGTTTAAGATCAAGTGGAAGTTGCAGTTGGTGCAAAGATG
AGGTATTCATTTAATTCATTCggtttttctgtaaaaaaaattactacagt
ctatttcaaattagctggtacatgttttttttttaagaaacacactttta
agaaacatgaggctcagaatgcctaaaatctaagaaacatctaagaaaca
tgctgaggctgagaatgagaaaataacattttttaattcggtttctttta
agaaccttccaattcagccttccatgaggctgattatgtcaaaaagttta
gaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaggaaac
attgaggctgcttgatAAAAccagtttcttaaaaaaaaacatgtagtgtt
tttcaaacttcaataacttttgatagaatttgaattagtttgcagttttg
tgcttgttaaaaagataattcggagtggaatattatcaaaaaagaatgga
tggaaaaacaaagatatgaaaaatgaagaagaagaaatgttatgatcttc
atttttgtatcagaatctcttcaatcttagaataTCATAGATGCAAAGAA
AGATACAGaaaaaaatacagcttaaaactttgccctggttgacttaaaaa
aggactcttttttgttgctttttggaCTAAATCTTTgatggaataaattt
ttttgaaaatttttttaacattaatgatgttctaagatcaaagaatcact
cgtgtgaaaaggataattatagcacaatcattgaagaagttgatttcttc
ctcttcattttctatcttcattttctgatcttttttgagttttttcttta
tgacaATAATCCACTcttgtttgtcttttcaacaaacacaatcgctactt
aattcaaattctatcaaaaagttattgaggtttgaaaaaacactgccagc
taatttgaaatagactttacaTTACTGGTATTATTTCACAAAATGTACTT
GAGNCGTCTTTTCAACAAACACAAAATcgctacttaattcaaattctatc
aaaaagttattgaggtttgaaaaaacactgccagctaatttgaaatagac
tttacaTTACTGGTATTATTTCACAAAATGTACTTGAGAAACTATGAGAA
AAGAACAAATGATGAATTATTGTTATAAATTCACAGTGGGGCAGATAACA
GAAAGGAGAAGTGAGGTGGTGGATAAAAGACAGTGATTATCCATGGATAA
TGATATTGCCATTCTTTCTTGCCTCCAGCAAGATCCATTGCATCTTTCCC
AGCTTAAGTTCAGATTCTTAAAGTCGTTTTCAATTAGTAACTTATCCATG
TTTTTTTTGGTTTCTCTCTGGGCCGTTGATATGGTGATGTATAAAAAAAC
CACACTCTAGATTTTGCTATTTTATTAGAAATATGGGTTCGATGTAGGCT
TAGGTAGGCAATGTCAGCTTTTTGTTGAAGAATGATGTTTGTAGCTTGTT
TTTAGTGATAATAGTAAGGGTTCTGCGATGGTTGTTGTCCTCACTCGTAT
CAAGGAGGCTGCATaggtatttgtattttttttcagagaTTGTGGTTTCT
GTTTATTATAAATTTGTCTCTATTCTTGACTGTTATGTTCTGATAGATGA
TCATTGACGGTCGTTGTGATTTAGTGGTCTGGTAACTGACTTTTATTATT
AAGTGGTTCAAGAGCCTTTCCTTTGTAGTATATGTATGAATTGGGTAAGC
TATAATACTTTTTGCTGAGTATTTATCCAAAAAAATCGTTTATGTTTGAA
CAGcagcaaaataaattttaacgatgttgttgttttttttctcttactAG
AACTTTACATCAACAGTGCAACAACCAAGATGTGATCTTCCCTCTAACTT
GAAAGATTGTAAAGATATAATGAATGTACAAGGTGAAGTGAAGGTTGGTA
GTCCTCCTtgataaaaccttttttttttaatgaaaaacttcaataaaTTT
GACTGTAAATTTAtggtgttttattttatttcttctgTCACATTCACAGG
TAGTTACGAATGATGCAACACTTCAAGTTCGTCCAAAAGAAGTCAAATTA
AAGCTTCGACCAGGTAATGCATTTTGAGCACTGATTTTATGCAACTCCCA
TATCATCTCGATCATCTTTGTATCACTGTTTTCTAGCTTGGACATCAAAT
CAGAAACGTTGTTCTCCTTTGGTGGNGAAAAACTTCAATAAATTTGAGTG
TAAATTTatggtgtttttttatttcttctgTCACATTCACAGGTAGTTGC
GAATGATGCAACACTTCAAGTTCGTCCAAAAGAAGTCAAATTAAAACTTC
GACCAGGTAATGCATTTTTAGCACTGATTTTTTGCAACTCCCCATATCAT
CTCGACCATCTTTGTATCACTTTTTTCTAGCTTAGGCATAAAAGTTTTGA
GAATCGACCTGTAAGGACATAAAATTAGAAACGTTGTTCTCCTTTGGTGA
AAAAAACCAAAGGGCTCTGGTGTTCGCAAGAGCTAAAGGTGTTTCTTTAG
AATGTTGAAAAGTAGAAGGATTTCCCTCACTTGAAGGATTAGTTTCCACA
GGAAAGgacatttttgtaatttttgtaagGTTACTTGTAGCTTTCACTTA
AGATTTTTGACTGCagctatttcaaaaataattttatattcTGGAGCTCT
GAAAGTTTAGCTTTAAGCTAAGGTGATTTTTGTGGCTAGAAGTCACTTTC
AATTGATAAATTGTAGCATTTAATTTTGATCTTGATGAAATTTGATGTAg
ggttcaaatatttttcaagtagaAAGTCTCTGGAGGTGCTATTGGGTCTC
CAGAAACAAACTatagaaatttttgaaagaaatgtgAATTTTTGTGGTAA
ACTTAAGACCTTAAAGAAACGTGGTATTTAAACCATTATAGTGTGAATAC
CTTACTTTTCCAAATCCCCAAACACATACATTTAAGAGAAGCCCAGATCT
AACTCAGAGAAGGAATAAACATCGTGAGTGTGAATTATTGTGACTAAAAA
AGAAACTGGCTCTATGAAAAATAATggctttttgctaaaaattcatattt
tttgacAGGATTTTCGACCTTTGAGCTACTTTCTTTACGAATTGGTTAAT
TTGAGGAAGGGATGTAATGGATGGATTTCTGAAAACAATAATGTTAGCCA
CAATATGTCACCTGTATGATTAAAAGCAAACTGCAAAGATTCTTATAGGC
AATGAatttctaaactatttattaaGGAACTGATATAAATTGAATTTAAA
GAACAAAGTTTCCAGAGCTAATTAGCCACATTTAATAACAATATTAGATA
AATGGTTTtggttatcaaaataaaagttttttgctagtttcaTCGGACAA
AGTCTTGTAGGTATCTATTATCTAAAGATCTAAAAGAATTTCTATTCATT
CAATATTTATTTAATAATAAGTATGTTTAGCTAATAgggaatattttaaa
attctaCATTTATTCTTGATTACCACTTTCAATCACCTCTTTAGTGTGAA
ACAGCTAATGTTGTGTATCAATAGATCTCTATTTAGTCATAGATGAATTC
TTAATGggttattttcaatttattgaCTTGCGCGAAGGAATGTGGCTCAA
AATACTTCTTCTTAAAATATACTTTATTAGCCACAAAACATCACAAAAGG
ACTTTAGTCATGGATCATAGTCAATTCATACAAAAGTATAGTCTTCCTAG
GTTAGATTTCCCTTGAAATCACATCTTTAAATAGGCTGGTATTTCTTTCA
CACATATGAAAATATCAGTATTTTTACATATATCAGCGTATTCTAAGCTA
TCATTTGAGCATTTCAATTAACTTATATGAATTGTAAAACAATTGTTATT
AGCATTTCTATTTTCacttcaaaataaatttcagcTTACTTCGAACCACA
AAATTTCACTCATCTCTTTAAAATTTCCATCACATTTTCAGAGCATTTCA
ACAAGCTAATCTACATAaccttttgaaacaaaaagtcaaagtgaaatttt
gagGCTACGTtgaaaaaacacaagaaaacctTAAATATTAACCACAATAa
ttcacaaaaaagtttttcaaactaCTAACAGGCGTCAACCTACAGGGACA
AGCACTTTTCTAGAAGGGGTCAACCTAGGACTTACCATTTAATGAATTAT
AATGGTTTTTCTAAAAAGAccactttttgtaaaattctAAAATGTCCTTT
CCTGTGAAAACTCATCgaaggaaaaacattttctgctgtttcaaataaat
ttttatgcAAACACCTATTATTAGCATAAAAAACTTTTATGTTCGTCCGC
TTGAAATCATCTAATTGAAATTTTGGGAAGTTGCAATATAATTCTAAACA
TTTCGTACGGATTTACTCAAGCCAGTTAAAACACTGTATTACAGTGTGTT
ATTTCTTGAATTGTTTTCAAGAGAATCCAGTCAATCTTATTACTGGAAAA
TGATTAATTGAATAAATTGAATGCAGTATTTTGCcatcaaatattttgaa
tgGTGATTCAAAGCAGTCTTGTTTTGTCATTTTGCCTCGATGGCTGCTTC
TTTGCCATTTATCTAAGAAATACTTgactttttaacaattttcagGTGCA
CCCAAAACATTTAGCATCAAAGTGACACCTGCAAAGAACTTTCCAGTCAA
CCTTTATTACCTTATGGACATGTCAAAATCTATGGAAGATGATTTAGAAA
AACTACAATCGCTCGGCACAAAAATTGGTAATTAGAACATACATTTATTG
AGAAGATTGGAATTTATACAAAGAAACAATGAGAAAAATGTTGATTATCT
TGATTGGAGACTTTTTAGAAAAGAATCAATTACTATTTGAACTAATATGC
ATTCGAAGAACAAAATGAAGTTAATAGGTACTATTATATAATTCAATCAA
TTATTTTTCAGCTGCTGAAATTGGAACAATCACGACAAAATACAAGCTTG
GTTTTGGCTCTTTCGTAGACAAGACGGTTGCACCTTTTATACAAGTTAAT
AAAAAGTAAGCATGGTCGTTTGTACAACCTTTTTGAACCTACCCcgatgg
aggtcctataaattattcgttcgttcgttcgttcgttcgttcgttcgttg
gtTCGTtggttcgttcgttcgttcgatgACGAGCCCGATTTTCGATAAAA
GAATTTTGGGCCAAAATAGAGACACAATAACAAGCTTTTTTGTtgaaagc
tttttttgtaaactcCTTTCCTTAGAGTCATTAACTGTTTGTCGAGAATT
CTAAATCAATGATATAAAAATAGTCTAAAGCATCAATGCCCAAAAATAAG
GGTTCCAAATTCATCTATGGTTTTTCTTGTGTAataaatttaaacaaaaa
atgaaatttcatgTAATCTTTTTTCTTAGAGATCGTCCTTGTACCCGTGC
AAATGACAAGAACGGGAATTTCCAAGGGTTTTGTGTACCTACTTTTGGTT
ATCGACATGTCTTCAATTTTAGTAAAGATGCTCAAGCTTTTGAGGTTAGT
GATGtttgatgaatttaaaaaaatatcaggCTGGTGAAAGAAGTTTTGCA
ACTTATGCTGAGCTAGGACAACATCAGATTATCAAACAAACTTTATAGCT
TTCTTTTGCTCTTTCAGGCTGCTGTGAAAAAGCAAATTATTTCAGGAAAT
TTGGACACCCCAGAAGGAGGAATGGACGGTTTGATGCAAGTTGCTACTTG
CGAAAAGGTAACTTGTAATGAAATACCACCAGGAACATTGATATTCTACT
ATTTCAGATCATTGGTTAACAAATTAGCTCTACAAGTAGAggatattttc
ttttgattaggAAATCATTTTAGACTCGATCAAAGATACAAAATGTGTTT
GCCTTCAGCatcttttttttaagttttgctttttttacTCAACAGATATT
ACAATGGCCTGAAAAAGATAGAGCTCGGAGGCTTGTTGTATTTGTTACAG
ACGCTCTGCCTCATATCTCAGGAGATGGAAaggtaaaaatatttgtttgc
tgATAAAACTCGCATCCCCTTCTTTGTTATCTTGTACGTGGATGAAAATG
TAACGCTCAATTATTTAATCCCCATTCAAAGTTAGGACAACTCTtgcatt
aaaggttttattttttacataagtgttttcgtttcatatcagacacatat
ctcatatcaggacagtgtcttacTATtgtgttatattatgctgatataag
caaaaaaaatattcttcccctctttctgaccaatcttactccacatctgt
gtcaatccaatgtgaaaaagcttataaattaaaattgatgagtaagaaaa
cgatatttaaaaacaaaacttttaaggcTCTGTTTTGCCTGTTATGatct
ttttttaacttttttcaccCTGCAGTTGGGTGGTATTGTTATTCCAAACG
ATGGAGAATGTCATCTAGATGCTCAAGGGCGCTACACTGAATCCAACACA
ATGGTAAGATTTTGAACAGTCTTTCTAGCTATATCTTCTTCTCATTGAAA
AATTTCTCGTCCTCTATAATAAGCAAGAATGGAACATCTTAAAATAGACA
ACAAAAACCTTTATTTAATGCTCTCCCTactcatatttttgaaaaattct
aatGTCTTAGCGATTTTCCTGTATGCAGGCAATTTTCCCAAAGATTTCTC
TTATTTTTCTGTATTGTGAAGACTTTGGTGTATCTATCTTTCTCGTATAT
TTAAACATTTTAAGGAAGCTCCTTGATTGTATTTTCCGAGGGAAATTAAT
TGATTCTTTCCATTTATTTTCCAAGAAGGTGTTTCTTTGATATTTCAGAA
TAAGCACTACTCTCTCGAATAATGAACTTAACACTCAGAATCATATGAAT
TTTCTACTAGCTATACTCAGGGCCCATATACAGCATCTCACTTAGGGTTA
GCTGTATGACTGTAATGAATGCTTTTTTGTCAGGACTATCCATCACTATC
ACAAGTTCGTGCCAAACTGAAGGAGAACAAAATTATTCCAATCTTCGCAG
TGACAGGAGATGTTGTTGATACGTACAACGTAAGTTTTTACTCATTGTTG
TAGAATCTATTTTTCCTCTATTCAGTGTTGAGTGTATTTCTTTCTCTTGT
ATCTGATACCAGTGCACCCTCGATTCCATAATACAAAACTTGATACTCTA
ATTTTATGTAATTTATAAAGCTGTTTACATTCCCTTACTAGCAGAGCTCT
CGCTATATTTCAAGATTGAAACTCAAAACAGATGTCGTTCTCGCTTTCCT
TAGAAAATCAGTAACCAATGGAAAGATATCGGATCATCAATTGGTGAACT
ATCTGGAAACTCTGACAACATCGTCAATTTGATCAGAGACAGTTATAAGG
TAAAGAAGAGAGGGAACCTTAACATTCCAGAAATTTGGATGCTTCTTAAA
TGAGGAATATCACTAGCTACTCTCGGTGTATAATATAAGTAATAAGTTGG
CtatttttgattgaattataaCTGAACATTTGTCAAGACTGACCAAGGTG
GTGCTTAACTTACTCTTCCATATAGCCTAGCTGCTTTTAAATGAAGGTAC
TTTATCCTAGTTTTCATCTCCCGTTCTCTGTCAGGCTATTCTCCAAACAG
TTCGTCTATCTAATGATCCAGTTGACAACATTCGAGTGGAGTACAAACCG
AAAGTGTGCGACTCACCAGACGGTGATGATACATGTACAGATGTGAAGAT
CGAGCAAGAAGTCGAGTTCTCCGTCACTCTCACTGCCACCCAATGTCCCA
TCGACCTGTCCAAGAAAGGTGACCGAACGTAAGTTCCCTTTAACCAaagt
cttttttcattttacaatttgtttttacttttaatttgaattttcaacGG
TGGTAAAATGACGCATCCTCAGCCTCAAATAGCAACCGTTTGTACCAACC
ATTTTTAGCAACGTTACTTGTCCGTAATTAAGATAgtccaaattttgttt
ttaacttttcatcAAATTGATTTTAGCTTAGGCTTtattagaaatttaaa
aatccgTTGTAAGTTTTCTCACACCAGAAGGATGATCTCAGAAGAGCATT
TTATTTACTCTTCTTCTTTTTAGCTTCAACATCAACATTCCTGGATTCGG
CGAGGTCAAGGTTGATGTAGAGCTCATCTGTCAATGCCCGTGTGAAACGC
TACCTAACATGCGCGAGGAAGATTCTGTCAAATGTAACGGTACTGGCACA
TTCCAATGTGGAATTTGTTATTGCCCTGAAGGACGGTATGGTGAACAATG
TCAGTGTGATGGCTTCACAAAACTCAGCGATAAAGAGTGTAAACCAAACA
ACACCACAGAGACGGTGTGTAGTGGTATGGGCAATTGCGTCTGTGGAAAA
TGTGTCTGTCATAGACAGGTAAGCTGGTGTGCTCTTCTCTCTGGctactt
ttcttcttctttttcaatttttaactcAACGTGAACCAAAAATTTATACA
TTCAGCAGCATTACAGAATCCcaagttcttgagttatgaaCGAGACAACG
TATTTGTTTCTGACTACGTACGTTGACACATTATTTGCATCTTTGTGAAA
ATTCTCATTCACTATCATGCTCACCATCCAGCTTTTCGCCTCATTTTTTT
CACAGGACTTACCGACAAATATTGTGAGTGGTAAATATTGTCAATGTACA
AACTTTGGTTGTGATTATCATAAGGGAGAAGTTTGCGGTGGTGGTATGTG
TTCAATCTTCCtctcttcaaatatttttttcttcttattctTAATCAGGA
GCACTTCCAAATGCGATTTAGTtgttttttgagcaaaatacGCTCAATCA
AAGATTATTTTGAATTCATCCTTTTTATTATAGCTGATCGTGGTATCTGT
GTTTGTAACAAATGTGTTTGCAACGAGCCTTTCATTGGTCAAAACTGTGG
AGAAGTCAACTGTACAATCGCTGACAAACAATGTAGCGATAAAAATGGCG
TAAGTTAGACTCACGCCTTGTTATCTATTCAGTCTCAGAATGACATAATT
TCCTCTATCGTATAGTGTGAATTTAAAAAGGGAGTGGTTGTTGCCCGGTT
TTATAGAATTCCGGTCTTACTAACATCGACTGTCATACCAAAATCGCCTC
TAGTATCGctttttttccaaataagaGCGTGAATTATGTTGAAAAATATC
GCATCCTACTTTATAAAAAATAGTTATCATACTCTACCTCTTTGTATCAA
AAATTGTATATGATTTATTTACCTTCATAGGTCGAGTGTAGTGGCAAAGG
AGAATGTAATTGTGGTATTTGCAATTGCAACGGAGGCTATGAAGGAAAAC
ATTGCGAAAAATGNTTATCtgacccgatgtagaaattttcttccgacacg
ctaaagctctgaaggtcgggaaaattttcaacatctggaagaaatacatt
acgAAATTTCGCCTGACCgtgtaattttttagaaaaatgggcccgagtgc
aatttggacagggaaggtgtcatggccgacaaaatttgggtcagaaaaaa
cttcaaaaggtt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029918	XLOC_029918	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_118	supercontig	scaffold_118:134002..144113 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13358	0.262061	0.913905	0.57538	0.341608	0.0102483	0.00360335	5.64005e-08	3.78905	3.235	3.26675	3.21703	5.20126	5.15579	4.76087	6.34564	2.05083	3.53074	6.54936	12.4632	0.0573016	4.42289	4.10268	0.722469	0.00716898	0.0642019	0.0319655	0.00710692	0.0497881	0.714078

Blast

[Close]

BLAST of TCONS_00046890 vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 382.104 bits (980), Expect = 6.285e-120
Identity = 221/555 (39.82%), Postives = 324/555 (58.38%), Query Frame = 1

Query:  322 PSNLKDCKDIMNV----QGEVKVVTNDATLQVRPKEVKLKLRPGAPKTFSIKVTPAKNFPVNLYYLMDMSKSMEDDLEKLQSLGTKIAAEIGTITTKYKLGFGSFVDKTVAPFIQVN--KKDRPCTRANDKNGNFQGFCVPTFGYRHVFNFSKDAQAFEAAVKKQIISGNLDTPEGGMDGLMQVATCEKILQWPEKDRARRLVVFVTDALPHISGDGKLGGIVIPNDGECHLDAQGRYTESNTMDYPSLSQVRAKLKENKIIPIFAVTGDVVDTYNKISNQWKDIGSSIGELSGNSDNIVNLIRDSYKAILQTVRLSNDPV-DNIRVEYKPKVCDSPDGDD----TCTDVKIEQEVEFSVTLTATQCPIDLSKKGDRTFNINIPGFG-EVKVDVELICQCPC--ETLPNMREEDSVKCN-GTGTFQCGICYCPEGRYGEQCQC---DGFTKLSDKECKPNNTTETVCSGMGNCVCGKCVCHRQDLPTNIVSGKYCQCTNFGCDYHKGEVCGGADRGICVCNKCVCNEPFIGQNCGEVNCTIADKQCSDKNGVECS 1932
            P   KD K   NV    +G  + +  +   Q++P+++ L+LR G P+TF++K   A+++P++LYYLMD+S SM+DDLE ++SLGT +  E+  IT+ +++GFGSFV+KTV P+I     K   PCT   +        C   F Y++V + +   + F   V KQ ISGNLD+PEGG D +MQVA C  ++ W       RL+VF TDA  H +GDGKLGGIV+PNDG+CHL+    YT S+  DYPS++ +  KL EN I  IFAVT +    Y ++ N      S++G LS NS N++ LI D+Y ++   V L N  + + + + YK    +  +G       C+++ I  EV+F +++T+ +CP    KK   +F I   GF  EV+V ++ IC+C C  E +P     +S KC+ G GTF+CG C C EGR G  C+C   +  ++  D  C+  N++E +CS  G CVCG+CVC ++D    I SGK+C+C NF CD   G +CGG   G+C C  C CN  + G  C   +C++    C   NG  C+
Sbjct:   83 PRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQN--------CTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGW---RNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK--SAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCP----KKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIP-----ESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE-ICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGG--NGVCKCRVCECNPNYTGSAC---DCSLDTSTCEASNGQICN 608

The following BLAST results are available for this feature:

BLAST of TCONS_00046890 vs. Swiss-Prot (Human)

BLAST of TCONS_00046890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ITB1	6.285e-120	39.82	Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2	[more]

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TCONS_00046890 (transcript) - C. hemisphaerica