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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046898 ID=TCONS_00046898|Name=TCONS_00046898|organism=Clytia hemisphaerica|type=transcript|length=1786bp
NNcgaacgcaatcaaatctcaatcgaatattaccgcaattttcagattcg
attgatattcgattgcgttcgactgatgttcgattgcgttcgaacGTCGA
CGATTCATTGACCCCGCCCCGGAtgcggattgttcatcgcataatttcta
cgggaaatcgaaagtaatttcattcgggtGCACCAGCAGGGTCGTGTGAA
GTCTGGTATAACTTGCATCCAGTAGTGGAAACttacatagccctcaaatg
aatgacctggcatGGCTGGTCAATTTACATTGAATAACCCTTCTTTTGTG
GAACAAATGGTTGAGGGTGGAAAGCCCTGGGGGTAACCAAAAATGTCATG
AATCTTTGGGGGTACTTAAAACTCAAGGGGGACCTAATTATTGCCttgga
cctaaacccaggctgacgctatgttaTGATTATTGTTTCGGGGTTGGATG
ATTGACAAGGATGACATGCTNCCttggacctaaacccaggctgacgctat
gttaTGATTATTGTTTCGGGGTTGGATGATTGACAAGGATGACATGctta
gccctcaaatgaatgacctggtgGCTGGTcataaaaatacaaagttaaat
caaaacaaaaatggtaaagtagagctgcaagcgaagctttgtagttcatt
tgttttgaaatttttctgctttgattggtcagtcatttgatggctacaCA
AGTTTCCTTCCACTGACAggccactgatgcaagttacccgacttcacggt
aattACTTGTTTACTTTTCTCTAAAGTCAACATgccaaggaaaagaaaaa
tcaggttCAGTTTTGTAGGTGGCAGACGTCCTCGGTTTTCTGATTTTGGA
ACAGCTGATACCAAGGCTGATCTACCAGTTAATGACCAGAAAGATGAAAA
TGTTGAAGCAAAGGATGAAAATGTTGAGGAACAAGTGATAGAATATATTA
CAAAAGATGATTCGGTGCCAACATCAAACAAAACTGAAAAGGAAGTGTCA
GAAGTAGGAACTAGTTctatgaaaaaagataataaaggGACCACACTAGA
TTATGTTTGTGGGAGAAACCCTATTGATAGGCAAACCGACGATGAAGTGA
AAGAAATTGttaacaataaaacaaaaacaattgatGCAAAATTGAAACAA
GTTCTTCCTGAATTGGAAGCTGAACTTGAGACTTGGGGAGAGTTGAAATC
AAATTATGTCCATCCTCTTGTTGAAAATGACACAGATCTTGAAACAAATG
ACGAAAACTTAGAAAAGCTTAGAGAAGCACAAAAAGAGATTTTAGACTTG
CACTGTCAAATAGACACCGCGAATAATCATCTGGTACATTTACACAAATC
ACTGATGATAAAGAAAGAGAGGTTAGCAAATTATATCGGATGCCAAACTA
TCAATGTTGATAGCACACTAAATGGAAACTTAACACAAACAATTTGCGAA
ACACCAAGACAGCTGATAAAGAAGATCACTAATTTGAAATAAAGTACTAA
TAGGGATCTATGTTAAAAATGGATTTTTGGAATCATAAACTGATTACCCC
TTCAAAATGTGCTAAAACATgtataatttcagaaaaagtaGAACAAATTC
GGTAGAAACCTTTTTTGACTTCCCTACCGGGGCCTTTAAGGCCATGCCCA
CCTCGAATCTCCCTGCTAGGTTGCCTAAAAAAtgaattctcaaaaaccta
tcaagttacccctcatttgaaaggtaatttaatgtagattaagaaaaaca
tCATGACTATGCATCAAAAATGAAGTGATAAGGTTG Run BLAST on NCBI protein sequence of TCONS_00046898-protein >TCONS_00046898-protein ID=TCONS_00046898-protein|Name=TCONS_00046898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MPRKRKIRFSFVGGRRPRFSDFGTADTKADLPVNDQKDENVEAKDENVEE
QVIEYITKDDSVPTSNKTEKEVSEVGTSSMKKDNKGTTLDYVCGRNPIDR
QTDDEVKEIVNNKTKTIDAKLKQVLPELEAELETWGELKSNYVHPLVEND
TDLETNDENLEKLREAQKEILDLHCQIDTANNHLVHLHKSLMIKKERLAN
YIGCQTINVDSTLNGNLTQTICETPRQLIKKITNLK Run BLAST on NCBI transcript from alignment at scaffold_118:288273..290163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046898 ID=TCONS_00046898|Name=TCONS_00046898|organism=Clytia hemisphaerica|type=transcript|length=1891bp|location=Sequence derived from alignment at scaffold_118:288273..290163+ (Clytia hemisphaerica)
NNcgaacgcaatcaaatctcaatcgaatattaccgcaattttcagattcg
attgatattcgattgcgttcgactgatgttcgattgcgttcgaacGTCGA
CGATTCATTGACCCCGCCCCGGAtgcggattgttcatcgcataatttcta
cgggaaatcgaaagtaatttcattcgggtGCACCAGCAGGGTCGTGTGAA
GTCTGGTATAACTTGCATCCAGTAGTGGAAACttacatagccctcaaatg
aatgacctggcatGGCTGGTCAATTTACATTGAATAACCCTTCTTTTGTG
GAACAAATGGTTGAGGGTGGAAAGCCCTGGGGGTAACCAAAAATGTCATG
AATCTTTGGGGGTACTTAAAACTCAAGGGGGACCTAATTATTGCCttgga
cctaaacccaggctgacgctatgttaTGATTATTGTTTCGGGGTTGGATG
ATTGACAAGGATGACATGCTNCCttggacctaaacccaggctgacgctat
gttaTGATTATTGTTTCGGGGTTGGATGATTGACAAGGATGACATGctta
gccctcaaatgaatgacctggtgGCTGGTcataaaaatacaaagttaaat
caaaacaaaaatggtaaagtagagctgcaagcgaagctttgtagttcatt
tgttttgaaatttttctgctttgattggtcagtcatttgatggctacaCA
AGTTTCCTTCCACTGACAggccactgatgcaagttacccgacttcacggt
aattACTTGTTTACTTTTCTCTAAAGTCAACATgccaaggaaaagaaaaa
tcaggttCAGTTTTGTAGGTGGCAGACGTCCTCGGTTTTCTGATTTTGGA
ACAGCTGATACCAAGGCTGATCTACCAGTTAATGACCAGAAAGATGAAAA
GGATGAAAATGTTGAGGAANTAGGTGGCAGACGTCCTCGGTTTTCTGATT
TTGGAACAGCTGATACCAAGGCTGATCTACCAGTTAATGACCAGAAAGAT
GAAAATGTTGAAGCAAAGGATGAAAATGTTGAGGAACAAGTGATAGAATA
TATTACAAAAGATGATTCGGTGCCAACATCAAACAAAACTGAAAAGGAAG
TGTCAGAAGTAGGAACTAGTTctatgaaaaaagataataaaggGACCACA
CTAGATTATGTTTGTGGGAGAAACCCTATTGATAGGCAAACCGACGATGA
AGTGAAAGAAATTGttaacaataaaacaaaaacaattgatGCAAAATTGA
AACAAGTTCTTCCTGAATTGGAAGCTGAACTTGAGACTTGGGGAGAGTTG
AAATCAAATTATGTCCATCCTCTTGTTGAAAATGACACAGATCTTGAAAC
AAATGACGAAAACTTAGAAAAGCTTAGAGAAGCACAAAAAGAGATTTTAG
ACTTGCACTGTCAAATAGACACCGCGAATAATCATCTGGTACATTTACAC
AAATCACTGATGATAAAGAAAGAGAGGTTAGCAAATTATATCGGATGCCA
AACTATCAATGTTGATAGCACACTAAATGGAAACTTAACACAAACAATTT
GCGAAACACCAAGACAGCTGATAAAGAAGATCACTAATTTGAAATAAAGT
ACTAATAGGGATCTATGTTAAAAATGGATTTTTGGAATCATAAACTGATT
ACCCCTTCAAAATGTGCTAAAACATgtataatttcagaaaaagtaGAACA
AATTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGGCCTTTAAGGCCAT
GCCCACCTCGAATCTCCCTGCTAGGTTGCCTAAAAAAtgaattctcaaaa
acctatcaagttacccctcatttgaaaggtaatttaatgtagattaagaa
aaacatCATGACTATGCATCAAAAATGAAGTGATAAGGTTG Coding sequence (CDS) from alignment at scaffold_118:288273..290163+ >TCONS_00046898 ID=TCONS_00046898|Name=TCONS_00046898|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_118:288273..290163+ (Clytia hemisphaerica)
ATgccaaggaaaagaaaaatcaggttCAGTTTTGTAGGTGGCAGACGTCC
TCGGTTTTCTGATTTTGGAACAGCTGATACCAAGGCTGATCTACCAGTTA
ATGACCAGAAAGATGAAAATGTTGAAGCAAAGGATGAAAATGTTGAGGAA
CAAGTGATAGAATATATTACAAAAGATGATTCGGTGCCAACATCAAACAA
AACTGAAAAGGAAGTGTCAGAAGTAGGAACTAGTTctatgaaaaaagata
ataaaggGACCACACTAGATTATGTTTGTGGGAGAAACCCTATTGATAGG
CAAACCGACGATGAAGTGAAAGAAATTGttaacaataaaacaaaaacaat
tgatGCAAAATTGAAACAAGTTCTTCCTGAATTGGAAGCTGAACTTGAGA
CTTGGGGAGAGTTGAAATCAAATTATGTCCATCCTCTTGTTGAAAATGAC
ACAGATCTTGAAACAAATGACGAAAACTTAGAAAAGCTTAGAGAAGCACA
AAAAGAGATTTTAGACTTGCACTGTCAAATAGACACCGCGAATAATCATC
TGGTACATTTACACAAATCACTGATGATAAAGAAAGAGAGGTTAGCAAAT
TATATCGGATGCCAAACTATCAATGTTGATAGCACACTAAATGGAAACTT
AACACAAACAATTTGCGAAACACCAAGACAGCTGATAAAGAAGATCACTA
ATTTGAAATAAATgccaaggaaaagaaaaatcaggttCAGTTTTGTAGGT
GGCAGACGTCCTCGGTTTTCTGATTTTGGAACAGCTGATACCAAGGCTGA
TCTACCAGTTAATGACCAGAAAGATGAAAATGTTGAAGCAAAGGATGAAA
ATGTTGAGGAACAAGTGATAGAATATATTACAAAAGATGATTCGGTGCCA
ACATCAAACAAAACTGAAAAGGAAGTGTCAGAAGTAGGAACTAGTTctat
gaaaaaagataataaaggGACCACACTAGATTATGTTTGTGGGAGAAACC
CTATTGATAGGCAAACCGACGATGAAGTGAAAGAAATTGttaacaataaa
acaaaaacaattgatGCAAAATTGAAACAAGTTCTTCCTGAATTGGAAGC
TGAACTTGAGACTTGGGGAGAGTTGAAATCAAATTATGTCCATCCTCTTG
TTGAAAATGACACAGATCTTGAAACAAATGACGAAAACTTAGAAAAGCTT
AGAGAAGCACAAAAAGAGATTTTAGACTTGCACTGTCAAATAGACACCGC
GAATAATCATCTGGTACATTTACACAAATCACTGATGATAAAGAAAGAGA
GGTTAGCAAATTATATCGGATGCCAAACTATCAATGTTGATAGCACACTA
AATGGAAACTTAACACAAACAATTTGCGAAACACCAAGACAGCTGATAAA
GAAGATCACTAATTTGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046898-exon-scaffold_118-1491911889:288273..289090 | TCONS_00046898-exon-scaffold_118-1491911889:288273..289090 | Clytia hemisphaerica | exon |
| TCONS_00046898-exon-scaffold_118-1510915933:288273..289090 | TCONS_00046898-exon-scaffold_118-1510915933:288273..289090 | Clytia hemisphaerica | exon |
| TCONS_00046898-exon-scaffold_118-1575043694:288273..289090 | TCONS_00046898-exon-scaffold_118-1575043694:288273..289090 | Clytia hemisphaerica | exon |
| TCONS_00046898-exon-scaffold_118-1491911889:289196..290163 | TCONS_00046898-exon-scaffold_118-1491911889:289196..290163 | Clytia hemisphaerica | exon |
| TCONS_00046898-exon-scaffold_118-1510915933:289196..290163 | TCONS_00046898-exon-scaffold_118-1510915933:289196..290163 | Clytia hemisphaerica | exon |
| TCONS_00046898-exon-scaffold_118-1575043694:289196..290163 | TCONS_00046898-exon-scaffold_118-1575043694:289196..290163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:288273..290163 + |
Blast
The following BLAST results are available for this feature:
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