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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046900 ID=TCONS_00046900|Name=TCONS_00046900|organism=Clytia hemisphaerica|type=transcript|length=1949bp
CAAAAACACGAGATAAAGTCGGTACGTGTCCTCTAACTTCGAACTTATAA
ATAGGTTTTATAAAAGTCATAAATGCAAGAAGGAAGTGAAGGAAAACACA
GTGTTCAGCATTTTCGGATTAGTCTCCAGATTACCATTAATTCGGTTTGC
TATAAATTGTGCAGAGATAAGTAAGTACATTCAAAGTTCTACAACAGGGT
TTGAACTAAACATCACTTAGCTCAGAAGAAAGACAAGAATGATCAAGATG
TTACGCAGCAAAAGACCAAAAAAGAAACCACAAAAAGCAGGACTTCTCGT
TGGTAGACGGGCTACAAACACAAGTGACGATGATATGATCAGTGCGGAAG
ATTTTTACAATATTGCATTCGGTTTTGGAATTTCTGCTTCAGGTGGCGGA
GGATCATTCATACAAGGGTTGGAGATTGCTCAAAGATCGGTTGCAGATGA
TTTCGAATCAGTCAAAATCTACAAACCGAGTAAGTTGAGCGGACCCGGTC
GAGCTTTCGTGTCTGGTGGCATCGGCAAGCCAGAATCTCTCAAAGAACCC
GTAAAATTTGGAGAGAGAGTATCAAAGCTTTTGAAATACTTGGACGGTCA
ACTTCGAAAGAATTACTCCCATCTGCAAGGGATTCTTCCAGTAGAAGCAG
GTCCAATCAATGGTCTTTTGCCAATCTACAATGTCCATGCTTACAACAAG
AAACAGAAAGatcctaaaagaaaaatatggctGTTCGATTGTGATGGAGC
TGGCCGCGCTGTCCCATCTATGACAAATTTGATGTATGATTATTTCCCAA
AAGGCACTTGCCCGATTACTtacaactttgaaaatgatgcTGGCagtaag
aaaaatgttttattacAATCTGATGAAGTGCTCGACGGGTCTGACGCCGA
ACAGaTTTTCACAAGCGTCATGATGTACGGGAGTGATACAATGAACGGAG
CCATCCCATTCACTTGTTGGCAATTTGATGAAACCATGGCCAAAGAAGAA
ATCCGATTCCCAAGTGGCACATATAGTTATTGGAAAAAGATGGGCAAAGA
ACTTAAAAACAGCTATACTGGTAAAGAAGAACTgatcaattttttacaaa
tcttgAATTACGCCAATTTTTACTCAgtcgatttttttaaagatcGGATT
TATACCTCAACCGTTGATGATATCATTCAAGTTCCTAATGATCGTTGGAA
TGTTGGTTACATCAAATTCGATGTTGAAGCTAATGTTTCCGAGAAACGTC
TTTATTTCGTCAATGAGAATCTAACAATCTCAAAGTTGACCTATAAGGAT
AATAAGCTGGAAACACTGGCCACTGCTCCAAGTAGTATCACTTCATTCTT
CAAGGATCCAAATCCAGATAAAGTTCCCATTGGTACTGATGGAACCACTT
TAGAACCTGGTTTCATTCCTTATAATACTGGTGAtattgacaaaattgca
aaattgaaAGGTGTCGAAATTATCATTGCTGTCACAGATCCTACCATTCC
TGGCAATATGAATTTCCTTTATGAAGATGATATGCGTAAGCGACTTAAGG
ATGTTATGAACAAGATTTTCAAGGAGTTGAATAAAGATAATTCGAAATAT
ATATTCCCAGGAATAATTGATGAAGTTGTACCACGACCACCGCTGAAGAA
AGATGGTTTCTCATAAACTGTCGCTATTGGTGGGCTAAGGTTTGATTTAT
TGAACAATCTTACAAAAACCCGAAgctcatttttttgcaaaactgTGACa
acaataattcaaaaatctgAATAATACCTTTGGGAATTTAGCACGTTAAT
AAATATAAAAGGAGAAATATTCTCACGTAGAAATTTAACTTGATGgcact
acagggtgtccctaattaaagtatcgagtttgaacatgcaattgagtaga
aaagtttgtgtgtgttatcgctaaaatataagaacgttctccatcacac Run BLAST on NCBI protein sequence of TCONS_00046900-protein >TCONS_00046900-protein ID=TCONS_00046900-protein|Name=TCONS_00046900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MIKMLRSKRPKKKPQKAGLLVGRRATNTSDDDMISAEDFYNIAFGFGISA
SGGGGSFIQGLEIAQRSVADDFESVKIYKPSKLSGPGRAFVSGGIGKPES
LKEPVKFGERVSKLLKYLDGQLRKNYSHLQGILPVEAGPINGLLPIYNVH
AYNKKQKDPKRKIWLFDCDGAGRAVPSMTNLMYDYFPKGTCPITYNFEND
AGSKKNVLLQSDEVLDGSDAEQIFTSVMMYGSDTMNGAIPFTCWQFDETM
AKEEIRFPSGTYSYWKKMGKELKNSYTGKEELINFLQILNYANFYSVDFF
KDRIYTSTVDDIIQVPNDRWNVGYIKFDVEANVSEKRLYFVNENLTISKL
TYKDNKLETLATAPSSITSFFKDPNPDKVPIGTDGTTLEPGFIPYNTGDI
DKIAKLKGVEIIIAVTDPTIPGNMNFLYEDDMRKRLKDVMNKIFKELNKD
NSKYIFPGIIDEVVPRPPLKKDGFS Run BLAST on NCBI transcript from alignment at scaffold_118:318270..321514+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046900 ID=TCONS_00046900|Name=TCONS_00046900|organism=Clytia hemisphaerica|type=transcript|length=3245bp|location=Sequence derived from alignment at scaffold_118:318270..321514+ (Clytia hemisphaerica)
CAAAAACACGAGATAAAGTCGGTACGTGTCCTCTAACTTCGAACTTATAA
ATAGGTTTTATAAAAGTCATAAATGCAAGAAGGAAGTGAAGGAAAACACA
GTGTTCAGCATTTTCGGATTAGTCTCCAGATTACCATTAATTCGGTTTGC
TATAAATTGTGCAGAGATAAGTAAGTACATTCAAAGTTCTACAACAGGGT
TTGAACTAAACATCACTTAGCTCAGAAGAAAGACAAGAATGATCAAGATG
TTACGCAGCAAAAGACCAAAAAAGAAACCACAAAAAGCAGGACTTCTCGT
TGGTAGACGGGCTACAAACACAAGTGACGATGATATGATCAGTGCGGAAG
ATTTTTACAATATTGCATTCGGTTTTGGAATTTCTGCTTCAGGTATGCAA
ATTAATCCTATTAGCTCCAGGGGGTAGCATCCTACCACGCCGGtgttctt
ttgtgtatatctcggagaaaagttttttaaacgatttgaaactttctgac
ttttaacaaaatcttattagGAGTATTGTGCAAATTTTTTTAGGGtgata
ggttgtccagatcagattttatgactatattgtgaaacatgacataaaat
tCAGCTAGAATCGTCGCTTAAAAGTCAAGATTTTGAATTgctgataactt
ttgaactaattatccaataattttcaaattttgacacatgATAGACATTG
AAAAAgttaattgaaaaaattgaaaaaaaaaattgaaaaatgatgacgtc
atcatcaaattttaacaaatttgctcatcttcagcatgaatttgtaagaa
aaaatcttcatggaGAATGCAACATCTGCAATTATTTTAAAGAACATCTT
TTCTCTTTCTGAATCTTTAAACAAAATcggaatatctttattggttcgac
tgtgaCAGGCATTTTTGCAAAGCATATATTTACGTAGACTTTTTCCCGAC
AgcgtggaaattttgtgatgacgctTTTGATCCCTttttagatgacgtca
tcaatttttatttcttccTGGAAGTTTGTatcatttttaccaattttcat
gggcatagctcttctagatcaaatataatcgagggtggtaggttctaccc
ccccccccccttgagaataaaaaaaaaaaaaaaaaacgggggTAATAggt
tttccccccccccccccttgtggctacgaaaataaaaaaaacttgggGTT
AATAGGGTTAAATTACTGAATTTAACCCTAAATGTAAGATACCTTCAAAC
TCTGTAGTTCTCCTTACTTTTGACTCTTTTCATTTAATACACACCCTTCT
caaagacccactgggaccccttcccactggcaaaattggctaaaatatcg
GTGTTTTAATTGCTGAGCACTGAATATCTGTTTTCACTGAAAATTTCATG
TAGTGTCCCGATGTCGATTTAGATTCTGCGGGTATTTCTCATGAAGATTC
TTTATCTGTAGGGTATATCATGATACAGGTTAATACTTTTGATATGTTTC
TCATATTAGGTGGCGGAGGATCATTCATACAAGGGTTGGAGATTGCTCAA
AGATCGGTTGCAGATGATTTCGAATCAGTCAAAATCTACAAACCGAGTAA
GTTGAGCGGACCCGGTCGAGCTTTCGTGTCTGGTGGCATCGGCAAGCCAG
AATCTCTCAAAGAACCCGTAAAATTTGGAGAGAGAGTATCAAAGCTTTTG
AAATACTTGGACGGTCAACTTCGAAAGAATTACTCCCATCTGCAAGGGAT
TCTTCCAGTAGAAGCAGGTCCAATCAATGGTCTTTTGCCAATCTACAATG
TCCATGCTTACAACAAGAAACAGAAAGatcctaaaagaaaaatatggctG
TTCGATTGTGATGGAGCTGGCCGCGCTGTCCCATCTATGACAAATTTGAT
GTATGATTATTTCCCAAAAGGCACTTGCCCGATTACTtacaactttgaaa
atgatgcTGGCagtaagaaaaatgttttattacAATCTGATGAAGTGCTC
GACGGGTCTGACGCCGAACAGGTAAGGAGAGAATTTCTTTATAAGAGATT
ATTAACTATACCAGTGCCAATAGTTAACGACAAATCTATTTCTTTTCTGT
TTTATCTTTGCTCAAAGTATGACTGTTTAAATAAGGGTACAGAGTCCTAC
TTGTCCTATTTTCCTACCTGTTTAAtacattaatttttttcaaatattag
aTTTTCACAAGCGTCATGATGTACGGGAGTGATACAATGAACGGAGCCAT
CCCATTCACTTGTTGGCAATTTGATGAAACCATGGCCAAAGAAGAAATCC
GATTCCCAAGTGGCACATATAGTTATTGGAAAAAGATGGGCAAAGAACTT
AAAAACAGCTATACTGGTAAAGAAGAACTgatcaattttttacaaatctt
gAATTACGCCAATTTTTACTCAgtcgatttttttaaagatcGGATTTATA
CCTCAACCGTTGATGATATCATTCAAGTTCCTAATGATCGTTGGAATGTT
GGTTACATCAAATTCGATGTTGAAGCTAATGTTTCCGAGAAACGTCTTTA
TTTCGTCAATGAGAATCTAACAATCTCAAAGTTGACCTATAAGGATAATA
AGCTGGAAACACTGGCCACTGCTCCAAGTAGTATCACTTCATTCTTCAAG
GATCCAAATCCAGATAAAGTTCCCATTGGTACTGATGGAACCACTTTAGA
ACCTGGTTTCATTCCTTATAATACTGGTGAtattgacaaaattgcaaaat
tgaaAGGTGTCGAAATTATCATTGCTGTCACAGATCCTACCATTCCTGGC
AATATGAATTTCCTTTATGAAGATGATATGCGTAAGCGACTTAAGGATGT
TATGAACAAGATTTTCAAGGAGTTGAATAAAGATAATTCGAAATATATAT
TCCCAGGAATAATTGATGAAGTTGTACCACGACCACCGCTGAAGAAAGAT
GGTTTCTCATAAACTGTCGCTATTGGTGGGCTAAGGTTTGATTTATTGAA
CAATCTTACAAAAACCCGAAgctcatttttttgcaaaactgTGACaacaa
taattcaaaaatctgAATAATACCTTTGGGAATTTAGCACGTTAATAAAT
ATAAAAGGAGAAATATTCTCACGTAGAAATTTAACTTGATGgcactacag
ggtgtccctaattaaagtatcgagtttgaacatgcaattgagtagaaaag
tttgtgtgtgttatcgctaaaatataagaacgttctccatcacac Coding sequence (CDS) from alignment at scaffold_118:318270..321514+ >TCONS_00046900 ID=TCONS_00046900|Name=TCONS_00046900|organism=Clytia hemisphaerica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_118:318270..321514+ (Clytia hemisphaerica)
ATGATCAAGATGTTACGCAGCAAAAGACCAAAAAAGAAACCACAAAAAGC
AGGACTTCTCGTTGGTAGACGGGCTACAAACACAAGTGACGATGATATGA
TCAGTGCGGAAGATTTTTACAATATTGCATTCGGTTTTGGAATTTCTGCT
TCAGGTGGCGGAGGATCATTCATACAAGGGTTGGAGATTGCTCAAAGATC
GGTTGCAGATGATTTCGAATCAGTCAAAATCTACAAACCGAGTAAGTTGA
GCGGACCCGGTCGAGCTTTCGTGTCTGGTGGCATCGGCAAGCCAGAATCT
CTCAAAGAACCCGTAAAATTTGGAGAGAGAGTATCAAAGCTTTTGAAATA
CTTGGACGGTCAACTTCGAAAGAATTACTCCCATCTGCAAGGGATTCTTC
CAGTAGAAGCAGGTCCAATCAATGGTCTTTTGCCAATCTACAATGTCCAT
GCTTACAACAAGAAACAGAAAGatcctaaaagaaaaatatggctGTTCGA
TTGTGATGGAGCTGGCCGCGCTGTCCCATCTATGACAAATTTGATGTATG
ATTATTTCCCAAAAGGCACTTGCCCGATTACTtacaactttgaaaatgat
gcTGGCagtaagaaaaatgttttattacAATCTGATGAAGTGCTCGACGG
GTCTGACGCCGAACAGaTTTTCACAAGCGTCATGATGTACGGGAGTGATA
CAATGAACGGAGCCATCCCATTCACTTGTTGGCAATTTGATGAAACCATG
GCCAAAGAAGAAATCCGATTCCCAAGTGGCACATATAGTTATTGGAAAAA
GATGGGCAAAGAACTTAAAAACAGCTATACTGGTAAAGAAGAACTgatca
attttttacaaatcttgAATTACGCCAATTTTTACTCAgtcgattttttt
aaagatcGGATTTATACCTCAACCGTTGATGATATCATTCAAGTTCCTAA
TGATCGTTGGAATGTTGGTTACATCAAATTCGATGTTGAAGCTAATGTTT
CCGAGAAACGTCTTTATTTCGTCAATGAGAATCTAACAATCTCAAAGTTG
ACCTATAAGGATAATAAGCTGGAAACACTGGCCACTGCTCCAAGTAGTAT
CACTTCATTCTTCAAGGATCCAAATCCAGATAAAGTTCCCATTGGTACTG
ATGGAACCACTTTAGAACCTGGTTTCATTCCTTATAATACTGGTGAtatt
gacaaaattgcaaaattgaaAGGTGTCGAAATTATCATTGCTGTCACAGA
TCCTACCATTCCTGGCAATATGAATTTCCTTTATGAAGATGATATGCGTA
AGCGACTTAAGGATGTTATGAACAAGATTTTCAAGGAGTTGAATAAAGAT
AATTCGAAATATATATTCCCAGGAATAATTGATGAAGTTGTACCACGACC
ACCGCTGAAGAAAGATGGTTTCTCATAAATGATCAAGATGTTACGCAGCA
AAAGACCAAAAAAGAAACCACAAAAAGCAGGACTTCTCGTTGGTAGACGG
GCTACAAACACAAGTGACGATGATATGATCAGTGCGGAAGATTTTTACAA
TATTGCATTCGGTTTTGGAATTTCTGCTTCAGGTGGCGGAGGATCATTCA
TACAAGGGTTGGAGATTGCTCAAAGATCGGTTGCAGATGATTTCGAATCA
GTCAAAATCTACAAACCGAGTAAGTTGAGCGGACCCGGTCGAGCTTTCGT
GTCTGGTGGCATCGGCAAGCCAGAATCTCTCAAAGAACCCGTAAAATTTG
GAGAGAGAGTATCAAAGCTTTTGAAATACTTGGACGGTCAACTTCGAAAG
AATTACTCCCATCTGCAAGGGATTCTTCCAGTAGAAGCAGGTCCAATCAA
TGGTCTTTTGCCAATCTACAATGTCCATGCTTACAACAAGAAACAGAAAG
atcctaaaagaaaaatatggctGTTCGATTGTGATGGAGCTGGCCGCGCT
GTCCCATCTATGACAAATTTGATGTATGATTATTTCCCAAAAGGCACTTG
CCCGATTACTtacaactttgaaaatgatgcTGGCagtaagaaaaatgttt
tattacAATCTGATGAAGTGCTCGACGGGTCTGACGCCGAACAGaTTTTC
ACAAGCGTCATGATGTACGGGAGTGATACAATGAACGGAGCCATCCCATT
CACTTGTTGGCAATTTGATGAAACCATGGCCAAAGAAGAAATCCGATTCC
CAAGTGGCACATATAGTTATTGGAAAAAGATGGGCAAAGAACTTAAAAAC
AGCTATACTGGTAAAGAAGAACTgatcaattttttacaaatcttgAATTA
CGCCAATTTTTACTCAgtcgatttttttaaagatcGGATTTATACCTCAA
CCGTTGATGATATCATTCAAGTTCCTAATGATCGTTGGAATGTTGGTTAC
ATCAAATTCGATGTTGAAGCTAATGTTTCCGAGAAACGTCTTTATTTCGT
CAATGAGAATCTAACAATCTCAAAGTTGACCTATAAGGATAATAAGCTGG
AAACACTGGCCACTGCTCCAAGTAGTATCACTTCATTCTTCAAGGATCCA
AATCCAGATAAAGTTCCCATTGGTACTGATGGAACCACTTTAGAACCTGG
TTTCATTCCTTATAATACTGGTGAtattgacaaaattgcaaaattgaaAG
GTGTCGAAATTATCATTGCTGTCACAGATCCTACCATTCCTGGCAATATG
AATTTCCTTTATGAAGATGATATGCGTAAGCGACTTAAGGATGTTATGAA
CAAGATTTTCAAGGAGTTGAATAAAGATAATTCGAAATATATATTCCCAG
GAATAATTGATGAAGTTGTACCACGACCACCGCTGAAGAAAGATGGTTTC
TCATAAATGATCAAGATGTTACGCAGCAAAAGACCAAAAAAGAAACCACA
AAAAGCAGGACTTCTCGTTGGTAGACGGGCTACAAACACAAGTGACGATG
ATATGATCAGTGCGGAAGATTTTTACAATATTGCATTCGGTTTTGGAATT
TCTGCTTCAGGTGGCGGAGGATCATTCATACAAGGGTTGGAGATTGCTCA
AAGATCGGTTGCAGATGATTTCGAATCAGTCAAAATCTACAAACCGAGTA
AGTTGAGCGGACCCGGTCGAGCTTTCGTGTCTGGTGGCATCGGCAAGCCA
GAATCTCTCAAAGAACCCGTAAAATTTGGAGAGAGAGTATCAAAGCTTTT
GAAATACTTGGACGGTCAACTTCGAAAGAATTACTCCCATCTGCAAGGGA
TTCTTCCAGTAGAAGCAGGTCCAATCAATGGTCTTTTGCCAATCTACAAT
GTCCATGCTTACAACAAGAAACAGAAAGatcctaaaagaaaaatatggct
GTTCGATTGTGATGGAGCTGGCCGCGCTGTCCCATCTATGACAAATTTGA
TGTATGATTATTTCCCAAAAGGCACTTGCCCGATTACTtacaactttgaa
aatgatgcTGGCagtaagaaaaatgttttattacAATCTGATGAAGTGCT
CGACGGGTCTGACGCCGAACAGaTTTTCACAAGCGTCATGATGTACGGGA
GTGATACAATGAACGGAGCCATCCCATTCACTTGTTGGCAATTTGATGAA
ACCATGGCCAAAGAAGAAATCCGATTCCCAAGTGGCACATATAGTTATTG
GAAAAAGATGGGCAAAGAACTTAAAAACAGCTATACTGGTAAAGAAGAAC
TgatcaattttttacaaatcttgAATTACGCCAATTTTTACTCAgtcgat
ttttttaaagatcGGATTTATACCTCAACCGTTGATGATATCATTCAAGT
TCCTAATGATCGTTGGAATGTTGGTTACATCAAATTCGATGTTGAAGCTA
ATGTTTCCGAGAAACGTCTTTATTTCGTCAATGAGAATCTAACAATCTCA
AAGTTGACCTATAAGGATAATAAGCTGGAAACACTGGCCACTGCTCCAAG
TAGTATCACTTCATTCTTCAAGGATCCAAATCCAGATAAAGTTCCCATTG
GTACTGATGGAACCACTTTAGAACCTGGTTTCATTCCTTATAATACTGGT
GAtattgacaaaattgcaaaattgaaAGGTGTCGAAATTATCATTGCTGT
CACAGATCCTACCATTCCTGGCAATATGAATTTCCTTTATGAAGATGATA
TGCGTAAGCGACTTAAGGATGTTATGAACAAGATTTTCAAGGAGTTGAAT
AAAGATAATTCGAAATATATATTCCCAGGAATAATTGATGAAGTTGTACC
ACGACCACCGCTGAAGAAAGATGGTTTCTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046900-exon-scaffold_118-1491911889:318270..318661 | TCONS_00046900-exon-scaffold_118-1491911889:318270..318661 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1510915933:318270..318661 | TCONS_00046900-exon-scaffold_118-1510915933:318270..318661 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1575043694:318270..318661 | TCONS_00046900-exon-scaffold_118-1575043694:318270..318661 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1491911889:319779..320290 | TCONS_00046900-exon-scaffold_118-1491911889:319779..320290 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1510915933:319779..320290 | TCONS_00046900-exon-scaffold_118-1510915933:319779..320290 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1575043694:319779..320290 | TCONS_00046900-exon-scaffold_118-1575043694:319779..320290 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1491911889:320470..321514 | TCONS_00046900-exon-scaffold_118-1491911889:320470..321514 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1510915933:320470..321514 | TCONS_00046900-exon-scaffold_118-1510915933:320470..321514 | Clytia hemisphaerica | exon |
| TCONS_00046900-exon-scaffold_118-1575043694:320470..321514 | TCONS_00046900-exon-scaffold_118-1575043694:320470..321514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:318270..321514 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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