TCONS_00046932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046932
Unique NameTCONS_00046932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046932 ID=TCONS_00046932|Name=TCONS_00046932|organism=Clytia hemisphaerica|type=transcript|length=3583bp
AAAGATGTGAATAATAAAGAAGTAGAAGTCTAAAAATGAGATTAATtccc
attttttccaatttatcaAACATATAAGGTCTTCGGCCATAAGAAATGAT
TTAGCCGATTGAAAACTAGTAAGGAGCTTTATAAAATTATTGACATTTTA
TGAATTAGTGGTAATGTTCGGAGAGACTTGGTTTCTGGTCATTCTTTACA
CCAGTGTGGTTATAGCAACTCAAGCAAATGGCGACTGTCTTGGTGAACCT
TATTGCATTCAAGGTTTCCTAAACTCATTTGGTCACCTCAAAAACCGTTT
CTCACGGAGTATTAGAGAaggaaaaacaatgaaaaaatatttacatcctt
CAGGAATATGTCGAACATTTGTTGATGATTTGTATTCATTATTGAAGGAA
AAACAGGATGAGGTTGATAACATTAAACAAGGGGCGCAAGACTTGGAAGA
GAGTTATTCATTTGATGAAGAAATTGAACCTTTTAATTACTTCCATCGCA
AAAATGACCCTCCCAACCTTGTTGGAGTCCATATCCCTTTCTCCTTACAA
GTAGCAGTCAACATTACACGGAGTCACGTACAAGTTCCAACCGAGATCTT
CAAAAACGACAAACAAGTGTTGAACAATGCACGGATGAGTGAGGGTCTGG
ATGAAACATTCATGAGCAACTATGAGAAAGACCCGGCACTTTTGTGGCAA
TATTTTTGTAGTGAAGCAGGTGTTCACCGTGTCTTCCCTGGAGAAAACTC
GAACCGGAAGATCGATTTATACGACTGCAGACGTCGATTATGGTACAACC
AAGCCATCAATTCTCCCAAAGATGTTGTCATTCTAATGGACATGTCCGGA
TCAATGACTGGTGCCCAtttcaaaatctcaaaactgaTCGTCCAATCACT
GCTCGATACTTTACAACAAGATGACTTTTTCAACGTTCTCTACTTCAATC
AAGCAACAGGCTTTCTTATCGATTGTTTAAATGACACACTAGCCCAAGCG
ACCTCTTACAATAAGAATCAATTCAAACAAGCAGTAACCAGGCTACAATC
ACCGAAATCAGTTGCCAATTTCCCTACAGCACTGAAGAAAGCTTTTCGCT
TGATTAACAAGGTTTCGACACACCGAGCGACGTCTTCATCGAGCTGCAAC
AAAGTCATCATGCTCATCTCAGACggtattgattttgatgaacacaCACA
TGAAATATTGGACGATGAGAATGCAGAGAAAGAAGTCGTTATCTTCTCTT
ACATCGTTGGTCAGTCTACCGATGAAGGACGGGCGGAGATGAAAGATATT
GCATGCCAGAGTGGCGGTGAACATTATGATTTCCCAACCGTCGGCAATGT
CTTAGACGGAGTGCTAAAGTACCAAAAACGTTTAAGTCAACCGCTGGGCC
AAAGTTTGGATGATCACGTGATTTTCACACCTTTATATCTCGATGGATCG
GGGTTGGGGATGATGACCACTATATCCACAGCTGTATTCAGCAACAAAAA
TGATAGCGATACCCGAGAGCTGATTGGTGTAGCTGGAATGGATATTGTTG
TCTCGTTGCTACAACAACAATACCCTGTCCAAAAGATGGGCGTTTTCGGA
CATGCTTTTGCGATCAACAATAATGGTTTGTTTTTAATGCATCCCAAGTT
TAAAGACCAGTCAGGTTATTTGCCTGACCCAGCCACCGTTTATTTGGACG
AAGTTGAATTTACTACCAATCCATCAAAAGGAATCGAGTTAAAACGAGCT
ATGATCAACAATGAGACGGGATGTATGAATGCCGAAGCTGATTGGCTGTT
TCCTAAGCATTCCAGTCAACGAGTGGTCCGTTTAAACAATACCTATTGTT
ATCGACCAATGGAAAAGACTCCTTTCTTCGCAGGTGTTTCTATGCCACAA
CAAAACGCTATACAGATGGTGGCTGATAAAACGAAAGCTCATTTATTCCG
TCGATCAGGTATCAATGCGTTACATTCTGATGATCCGAATGTCATCATTG
AAGTTGCTGAATGGTCTTTTTGTGACATTCGAACGGAAGGTGAAAAGAAA
CAACCCGCTTCCATCAAGTATTATCCAACAGCTGAAGACTTGTATCAGTA
CTTGAAAAACAATGATGAAGATCTAGACGAAAAATGTGACGAGGAGATGT
TGTTAACTTTACTTCTATCAGCATCAGTGGTCGCAAACTTCACCAGAGAT
CACTGGTCTGTTGAAGAGCTCACTCATAACAACATCACTGACGCTTATAT
TATCACCTCTTCCGGTTTCACCTACATCTTATCGACAGATGTCAACAATA
CTAAACGATTGGATCGAGACATCTTTGAAGAGATTCGATTCACACATCCC
GCATCATTCTaccaaaaagaatttcataatCAGCTGACTTTCAGCGTCGA
CATCAAATCAGGAAAACCACAGAATCTCCATGATAAAGAGGTCTTCAATA
ACGAGGAGATTGGGAATATAGCGATTGGTAAATCAGTTTACACGGGAGAT
GAAAATACGATGCTTGGAGTCGTCGGAATGTCAGTCCGAGTGGATTTTAT
GAATAGAATCATGCACGAGGCTGCACAAAATATCACTGATTCTGATTGCA
GTAAAAATTCATCACAAAAATGTTACTTAATTGATGAAAATGGGTATATT
GTTGCTACAAATAGACCAGTTAATCGGGTCGGTTATTTTCTTGGTTGGTA
TGAAGGCCAACTCATCGAGGACatggaaaaaagagaaattttggAAGTGC
GAGAATACAACGATACACAAGCAGAATGTCCACAACAATCGGATACTTCA
TCCTCCTCTCCAGCTAATATCTTGAAAACATTTTACTACACTGTCTTTCA
GTTAGTATACAACGTGTTGGCACATACATTAGCAATCACGTGGTGGATGT
TGACTAGCCTACTGACCGTCAGTATGAACGCTATTGGGGTTTCAGCGGCT
AGTAGAAATGTCAGTTGTACCAAAACTATCGAAATCTATTTACTTAAAAA
CAGAAGTATTGATACAGAGGGAGCTTTTAATTGCTCCTCTAATTGCAGTC
AAAAATATATCATCCAAAGTATTCCAGATACTAACTTAGCTCAGGTCATA
ATAAATAACAATTGCCGTGGGGCTGACGAATgtccattattttcaaaaaa
caatgagcCGAAACGGACAAGGGATCTCACTGTATGTGAGCAGCCTCTTC
GCTATCGAAGGGCTTTGTCAGTTTGTTATAAATTGACTGGAGAAGACAAA
CGAGCGTGTTTTGATGTTAATGAGAACAAAGAATCGAACATTATCATTTA
TCTTATCGTATTCATTTCCATCTGTTTTGCAATCATTATAGCGATTAGTT
TTAATATGTATTTTCGTAAATATTTTCATGGCAGGTGTATGTAAGATATC
TAGATAATTCTTAATTCTTGTgccaattcttaaaaaaatggaaaggGAAT
GTTGCTTTCCTTAAGCATTGGACCAATGCTTAAGTAAGATTTTAGACATT
AAAGGTAAAATACTCGGCGCACAGATATGGCATGGGAGAGTGAAGGAAAG
AGATAAATATTTGTAGGGGTCTGGACACACCGG
Run BLAST on NCBI

transcript from alignment at scaffold_118:250863..263073-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046932 ID=TCONS_00046932|Name=TCONS_00046932|organism=Clytia hemisphaerica|type=transcript|length=12211bp|location=Sequence derived from alignment at scaffold_118:250863..263073- (Clytia hemisphaerica)
AAAGATGTGAATAATAAAGAAGTAGAAGTCTAAAAATGAGATTAATTCCC
ATTTTTTCCAATTTATCAAACATATAAGGTCTTCGGCCATAAGAAATGAT
TTAGCCGATTGAAAACTAGTAAGGAGCTTTATAAAATTATTGACATTTTA
TGAATTAGTGGTAATGTTCGGAGAGACTTGGTTTCTGGTCATTCTTTACA
CCAGTGTGGTTATAGCAACTCAAGCAAATGGCGACTGTCTTGGTGAACCT
TATTGCATTCAAGGTTTCCTAAACTCATTTGGTCACCTCAAAAACCGTTT
CTCACGGAGTATTAGAGAAGGAAAAACAATGAAAAAATATTTACATCCTT
CAGGAATATGTCGAACATTTGTTGATGATTTGTATTCATTATTGAAGGAA
AAACAGGATGAGGTTGATAACATTAAACAAGGGGCGCAAGACTTGGAAGA
GAGTTATTCATTTGATGAAGAAATTGAACCTTTTAATTACTTCCATCGCA
AAAATGACCCTCCCAACCTTGTTGGAGTCCATATCCCTTTCTCCTTACAA
GTAGCAGTCAACATTACACGGAGTCACGTACAAGTTCCAACCGAGATCTT
CAAAAACGACAAACAAGTGTTGAACAATGCACGGATGAGTGAGGGTCTGG
ATGAAACATTCATGAGCAACTATGAGAAAGACCCGGCACTTTTGTGGCAA
TATTTTTGTAGTGAAGCAGGTGTTCACCGTGTCTTCCCTGGAGAAAAGTA
AGTTGTTGAAAATCTTAGTTCTTGTAGATAACATCGTTTGACCGCGTCGA
TAGATTCCACCCTTTGACATCATGAATCACGAAGATCACGCATGGTTTTT
TCAAGATTGCATTCCAGTTAAGCCCGATTGAAAATCAAAGTCAGTAACAT
TTCTTACAAATGTAGGTCTCTGTAGAGGTAGAAATACTACTGAAGGCTGT
CGTGCGAATTTAAGCTGCTTTGTATTCAAATAAAACATCAGAAATAAAGC
CTTGGCTATTACTTGAAATTATCGCATGTCATTTCGGCGAAGATGGTGTC
ATACGAGTAAGAAACCCATGTCTCACAGCCCCAATTGAACTTTTTTCCAC
AGCGAGGATAAAAGTTTCTATTGAAATCCCAATGGGGATAGAAATTCTAT
TGTTTTTTTGTGCAATTTTTTTACATTGAATTTTGAATTGGGATGAAATC
AAAGTCAATTTCCCTCCAGGGAAGAAATTTTAGCTAATTTTCAAGTGGGG
CTAGGGTCCCAGCGGGTATGATATTTGCGATGTCCTTTATCTACTAACTA
GTTTCCAAAATATGGCCTTAGGATCTTTGGATTATTTATACAGTAAGGCC
TCAGATTATTTGCTTCTCCTCGGTGTACATTGTGGAAGGTTCTCTCTGAT
AGATTTAATCTAACATTCTAATATAATATATTTTCGTATCCGGCTACCAG
GTGAAAAGGTTTTGATCTACTAAATATTGACATATCTCATTTATAACTTT
TCTAAGATTTTGATAAGATTGGAAACTTCTAAAAAGTTTTCAAATTCGTG
CTTTTATCTCTTACTTCACTTGATAGAATCTACGAAAGGGGAAAGCACTT
ATCACTAAAACTTGACTTATGAGCAACCTCAAAAATGAAAGATAAAGGTG
TCATCTCATTTCTTTGGTGAAATGGAGGTCAACCCTCATGGTTAAACAGA
AAATCTTCTTATTTTGAAAAGGTGCAAAGAAAATGAAAAGGTAAAACAAA
AAAGAAGAATTAAGTCAAAATAAAGAGATTTTGAGGTCAAACTTGATACG
AATTTTAGGATAGAAAACATTTTTATGATGAAGATCTGTAGAGCAGATAT
TTTGACGAATTGATATCAATTAAAGGAAATGCTTTTGAAGGTATCACAAA
TGCAAACATTACGAAAAATGAAATTTGTTATGCTTTTGTTCACCTTAATA
ATCACAAAACATCTAACTCAATGCAGAAAAATATTGGAAGAAATCGGTTT
TTTCAACACTGCTCACCATTTACAAACAGAATCGCAAACACGACATTCTA
TAAGACTCACCATTGATCCTAAAAAACTCACCACGAGATTCAAAGAAGGC
TTACAGAGATCACTCAAACCTTTTAACGATAATTTAAAAGCCATACAACG
AAGAGCGGAGAAACTTTACTCCGAACATCAAAGCATCGAATTAAAGGACA
GATACTATTATCACCGTCGTATCAATTACGATCTTCCAGTCAGAAAGGTG
ATCTCATTTTCCGGGCATACCAACATCAATGTAAACGAGAGTTTCATGCA
AGTACCGACCGACGTATATGACCAAAACAAACTACTTATCAATCAAGTCA
TCTGGTCCAAACGTCTGGATGCAATTTTCCAAGAACAGTACGATTCAAAT
CCACAATTCTCTTGGCAATATGTTGGCTTCACAACAGGCGCTACCAGACA
ATACCCTGGATCACACTTGGTGAAAGAGTAAGCCATAATTTTCTCACAAA
TAACTGAATAACTCCGCAGTATTGAGTGATAGATTTACACTTCAGTTTTA
TAGCTCATAGCCAGGGGGCACGCAGTTACTACAAGACAGTACTTACTACC
GTGGTGGTACTGTATTCAGAAGTTATGAAAACAGTTACTACACAGTGTAG
TAACTGCTGTTTGGGGGTGGTGCCAAAAACTAAAACTAGCACTTTTGGTG
TAGTAAGTGCTTATATTTTAATTCTTTTAAAGAACTTTCAAAAATTTTCA
CAAAAAATGAATTTTTTTGTGAAAAAATTCCTTGGTAAAAAAAATATTTT
TGTCATAAATGGACGAAAAAAAATTTGAAATTTTTCTCAGACCCAACTTT
GAAATTATGCTTTCCTTAATTATCATTAAAATGTTCTCAACAGCTGTTAA
CCAAGTAAATTAAAAGAAAATCTAGCACAAAAATGGCTTTAGGTTGAAAA
ATAATCGCAATTTAGGGTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCATGTTTTTGATGATATCAC
TCAAAAACAGGGGTGGTACCTGGAAATCTTTTCTGAAAACAGTTACTACC
AAGGTGTAGTAACTGCAAAGGGTGGTGGTCCTGGAAAAAAAGTGTTGAAA
AGGCACTTACTACCCATCATGTCTTTTAGTAACTGCGTGCCCCCCTGTCA
TAGCCGCTACTGTCAATTGAAGTATTGTTCATGTTTACGTTAGTGTTAGT
AGTTCATTTTTCCCCTACATAACATCAGTGTTTCGATGTAAGTAGGCGGT
ACTGTGTAATCGCAGTAGAGGCGATGTAATTATTACACCAAGCTGCTTTC
TAAGAAAGGATTGCAACAAACTTGATTTTTTTCTTGATATTAGGTTTGGA
TGAATATAGCTTTAACAAAAGAGCTCTATGATTCGCTGAACCAAATTAAC
CAATTGCAAGAAAAATCAAGACATGGCGTTATAAATCCAGATTTAGAACA
CCATGGACATAGACTAGTAATTTTCACCGAAAAAGGCTTACGCAGATATT
TTATGTTTTTAGAAAAAGGAAAGGTTATCTGCTCGTATCTAACCGACTCA
AAAGAATCTGCTCGGAGACCAATGTCTTCAACAATTTATCTGATTGGAGC
TTCATGTAAGGGTTTGCGCAGCCTCGAAACACCCGTAGGTGGGGAGAAAA
AAAACATACACTAGTATAATGATATGTCAGGCGTTCAATTCCACAGGGTC
ATCGATGAATATTAAGGGTTCTAATTAGTCTGTGACAGTCATTTGGAAGG
CTAATACCAACGATCCAATAAATTACGAAGTATTTTAAAATGAAGATCAT
TTTACAAAATAGAAAAAGAGAAAAAAACCAAAAATGTTGTTTTTCATCGA
CAAAGAAAGAAATTAAGAAGAAAACGTGAAGGAGTGAGAAGCCAGAAGAA
GATAACATATTTCTCATTGCGATTCGATCAGGCTCGCCCTAAACGCATAT
GTTTATGCTTACGAGTAGAAAACTAAAGGTTTTTGGTAATTTGAAACAAG
TCTCTTTTGTAGACCCTCCTTTAATCCGAATTTGAAATAAAAAAAATGAT
TAAATAAAGACATAAATTAGCCTAATTAAGAAGATTAGAAGGGAAATAGG
AGCTCGATTATTGTTTTGGCCGTTTTTAGCGAAACTGTTTGAAATTGAAG
CTAGTGTCTTCGTTACTGTAAATAAATGTACGAGGAAAATATGAGAACAC
ATAAATAATGAATATATTTGGTAGTTGCTAGGACAAAACATTATATAATG
AGACATTAAAAAAATATGCTTGGTTAACTATCACAGTATTGAAACATTTT
GATAATTATTCAAGAACCATTCGCTTCTTTTTGAAGAAGAAGAAGAAGGA
AGAAGAGAAAAAGAAAACAGAAGATTAACATTGGAAATAAAATGTTGTCG
ACGATAAGTTTTTGAGAGCAGTCGTTATTGGAGGCACTAAAAATAACTTT
TTTTTCAGCCAAGACCAAAGGAAAAAGACCGTCGTTGATGTTTGAGAAAA
CTCAACAGATACATACAGATCATATCAAACTCGCAAAGTTGTGAAAAAGA
AGTCAAGAGCTTTCTCTTTTTTTGATTAAGTTTCGTGGGAATGAAAAAGA
GAATGGATGCAATGGTCCAACAACATTGAACAAACAGTGAGAAGGGCGTC
CTTTTTAAAAGAAAAAACGCCACGGGTGGTTATTGATTTTCAATCTTTTT
TAATGAAGAAGTTGAACGCACGAAAAAGAATCAATCAGTTTATAAATTTA
GAAAAACTCACTTCATTTTCTATATATTGATTGCTTTGGAATGACACTGT
TAAAGTTGAAAGAGAGAATTCTGTTGGAATTGACCTTACGAAATTTTGGA
ATTTGTTGATCAGTCAGAAACTTATTTTTCATTATGGGCAAGAAGCATAT
TCAAATGTTCATTCGACATCTTTACATGATGTGCATTTGGTATGTCAAAT
TAACAATCCTTATTCATTATTGTCAAAGCGTGAATAGCAGTATGATCGGA
AGTTTGGATCAAATGTTTAAGGTGGAGAAATTCGAACAAATTTACACAAA
AAAACGCAAAGAAATTTTCCAAATGAAGGAAGTTAAAGTTGGTGAATTAT
CGCAAAAATATGGGTCAGACTTACGCGCGTTTTTACTGTCCCACATTAAT
GAACTCATGGAAATCAAGAGAACTTCACAATTTCTTGAACAGAAGTACAC
GTATGATCCCCTTTTGAAACCCTTTTATCAGTTCAACGATAAAGACCCGA
ATCCTGACCGCTTGGAGATCAGTTATTCAACAGAATTCAATGTTAACATC
AATAACAGTTTTGTGCAAGTACCAACTGAAATCTTTCGTAACCATACTAC
CATTTTGAATGAGATAAATTGGTCCAAAGGTTTAGATGAAGTATTCAGAA
GAAATTACGAACGTAATCCAACGTTACAATGGCAATATATCGGTAAAGAG
ACAGGGGTGATGCGAACATATCCAGGTGTAAAGTAAGTAAGATTTTGGGT
TGATCGAGTCACTGCTAAGTCCTTCAATCCAGAAATTATATTTCAAATGG
TTGAGCATTTACAATTTTTTCTTTCCTGTAGTAACCTTTATTTGATCTTT
GACGCTCATAGAAGGAATTTATTGGGGAAGGTGGATTCCATATCAACATG
GAACACAGGTTTCTTTTGCCCTTTGTGCAATTCATTTCCTTCTTGCTAAG
TTCTACAGTGAGAGTCGCACATAGACTACAAAGTCAATAACCAAGATATG
ACTGCTGGCAATGATGATATACCAAGCAGAAAATTTATAGTGAATTTTTG
AGAGCGATAACGCTGCTTTCAAATTTATAAACTTTAAAGACAGTTAGTGT
GAAGTTTTATTCTGCGAACTCGTCATTTTTACACCTTATTTCTTTTATAA
AAAATTTAAGACCTAAAATTTTCTATTTAGACTGTTTCAGCACATATTGT
GACATAATAGACAAAATATTCTAGAAGGTCTTTCTCATGAATTATATACA
AACTACACAGATTTTATTCGTTGAAAAAGATCGAAGAAGTTAGAAAAGGA
ATATTAATTTTTAAGATAGGACACCCTTAACATATGGTAGGGATATCGTG
TAAGAAATAAGAAAATTTCGAAAGATTTGAAATAATTAGACACTCTAAAT
AGTTACAGTGAAGTCTCGATAACTCGAACACATATGGAGAACGTGTTCGA
CTTAAACAATATTTGAGGTTGTTAGCAGAAGAGGCAGTAATATTTGTTCA
TGTAAAGAAAACATCCCAGCTACAAAGATTCTAACTGTATGTTGAAACTT
CGCGAAACTTTCATTGCAACAATTCTACCACTGTCCTATGTTTTAGCACT
TGTCTTTTTCCACGGTTAAAGAACAAAGGCACAGTATATAAAGAGAAATT
TGATTTTTTATTACAGAACGATGTTTAGGAGTCAGGGTTTTTTTCTGTTA
TAAAAATCGTTTATCACAATCAGTTTATTTATCTATTTATTTGAAAATAT
TAGAACGACATAAAATCATGGCTGCGATTTCAATCTTGATTGATGAAAGT
AGATTGTGTTCCTGTTCAGTACAAATGAAATATCTTATTTTTTCCCTTCA
AAATTTTCCTCCATGTTCTTAAAGAAGATAGATGTTCCATTGAGGTTTGG
GACCTAAAATACATTTTGAAATTGCAATGGTCTTTTTCTTTTTCCCATAA
ATTAGATTTGCTTTTTTTGCGAGAAAGGTTAACTTGGTTTGAAGAATGTT
GTTTCTTACTTTTCTTTAAGGATGAGAACATTCCCTTTTTAAGACTTAGT
TTTTGCAATGAAGTATATAATTTTCAAAATTCTTTATAAAATATGAGGCG
ATATTTGTTTAGCATGAAAGCCCGAGGAAAACGTTTGTGATGAATGGTTA
CAGGTTATTAGGGCTAAGATAACAAAAAATATTTATTAAAATAAAACAGA
AAGATTTGTATGAAAAGAGGAAAATGAAAATGGAAAAGTCTAGATTGCCA
ACAAAACAACAACTTTGATTTAGTTGGTGGTGAACGTTTGGAAAAGATCA
AATCCACCATCATGGAAAAACGTTTGATAATCTTTCTGTATTGGATTTTG
ACAAGATTTACAGTGAATATGGAATGCAGTACTGAAGACCTTGTAAAGAA
CACCTTTCAAATCGTAAAACACCACGCATACCAAAATACTATACAAAATA
CATTAACGAAAGGGTTAGTGATAGAACAGTCCATTGATTTGGAAAATATC
AGTGTATCATTTGAAAGTGATTTACGCGCATTACTGATGCCACGAACCAA
ACTACTAAACAATATCAAATATAAAGCTAGAGAGCTGATAGACAATTACA
AATGTGACGAAAATATAGAAAATTTCAACTACTTCAACCGAAGATATCTA
CCTCCGAACCCTGTACAAATCCATCCACAATTTTCAGAAGAAGTTCCTGT
TGCCATCAATCGCAGTCATGTTCAATGTTCGACTGAGATCTTTCAAGGGT
CCAAAGTTGTTTTGAACATCGCCAAAGCGACCGAAAAGCTAGATGAAGTT
TACCGCACAAATTACGCTCAAGAGCCAACCCTTTTGTGGCAGTTCTTTTG
TAGCACAATAGGCACACATCGGGCTTTTCCTGGTAAAAAGTATGTAGTTT
TGCCGGTGTATGGAAATGATCTTTATTAGGAATGGATATTTGCAAACGAG
TCTCTCTGTTTTTTTTGTATCTGCTTCCTTACTCTTTGTCCAACATTTTA
TGACGTTCCTGTTTTTAATGGCACGAATAAATCGATCCATTAAGCTTCAC
TGTGGAAATTAAAGCAATGACATTTCTTCTTCATATCATCCAGGGGATTA
GATCTAATTATTTGAAGAGGGGATTATTGCCAATATCGGGGATAAATTCA
TCAAAATTTACATCCACAAGTTTTCAGAGTACTACACTCATCTTTTCATT
GTCATGTTAATCTAATATACACATTAGTGCCAATTTTATCCAATAATATC
GATCGAAACAACAATAAAGTGAAAACGTGTAAAGAAAGAAACAAAAGAGT
TCTATTAATTGAACAGATAAATTGGGATTTGTTGCATTGGATCTTGAGGT
CTGAAAACAAAACAATATTTTCATTTCTAAACATAAGGCGAAATACCATG
AGTGAGGATCGAATGAATGGTACGAAGCACATTTATAAAAATTAAAGATC
TTGAGGTCTGAAACACAGAACAATATTTTCATTTCTAAACATAAGGCGAA
ATACCATGAGTAAGGATCGAGTGAATGTTATGTTACGAAGCACAATTAGA
GAGAATAATCTAAAGAAAGTCTGTTCCCTAATACAAAAATGAACCGTATC
ATATTTTCTTTATTGATAGCTCGAACCGGAAGATCGATTTATACGACTGC
AGACGTCGATTATGGTACAACCAAGCCATCAATTCTCCCAAAGATGTTGT
CATTCTAATGGACATGTCCGGATCAATGACTGGTGCCCATTTCAAAATCT
CAAAACTGATCGTCCAATCACTGCTCGATACTTTACAACAAGATGACTTT
TTCAACGTTCTCTACTTCAATCAAGCAACAGGCTTTCTTATCGATTGTTT
AAATGACACACTAGCCCAAGCGACCTCTTACAATAAGAATCAATTCAAAC
AAGCAGTAACCAGGCTACAATCACCGAAATCAGTTGCCAATTTCCCTACA
GCACTGAAGAAAGCTTTTCGCTTGATTAACAAGGTAGATAATGAAACAAA
CAAACGAATATGTTTTGAAACCTGAATGTAATTGAGCAAATTTTTAACAG
AAAGCAATCAAGGTATCCAAATGACTTAAACAGTGATGAAACAATGAAAA
CTGCAACGTGCCATATCAGGATATTCAAGTCATAATGTTTTCTATTGAAA
CACCACGTTTTACCAGTAATGGCAAATTTAAGCTAGAGAGAAATTGTTTA
AAATTTGCCACTACTGACAAAAACCGGGGTGGTTGCCGTAAAAATCAGAG
ATGTCAAAATATTTAAAACAGAAAGATTTCAAGTATTTTGTAATGCAGTA
ATTGAAATCCACTGTTCGCTCCTATCTTGTTTTAGTGTGATCCTAATGCC
TAATTTTGCCTCTATTTTCTACCGCAGGTTTCGACACACCGAGCGACGTC
TTCATCGAGCTGCAACAAAGTCATCATGCTCATCTCAGACGGTATTGATT
TTGATGAACACACACATGAAATATTGGACGATGAGAATGCAGAGAAAGAA
GTCGTTATCTTCTCTTACATCGTTGGTCAGTCTACCGATGAAGGACGGGC
GGAGATGAAAGATATTGCATGCCAGAGTGGCGGTGAACATTATGATTTCC
CAACCGTCGGTAAGTTCGTTTGCTTTCTCGTATCGTAGTGAGTATATATT
ATCGTACCAGACTTGAGCTTGATTCCTTTGCATACGTAGCTCTTTTAATA
ATTCTGAATCTTAAATGCCAATAATAAAGGCCCAACCATTTATAAATTTA
TCAAAAATAAAGTTACAAAAACAAAAGTTTCTTATTTTGCACTGTGTAGC
CCGATTTTAGTGCATATTTTTGTCATATCCAGGAGTACAGCTTGTTAACT
TCACACAATATATGTTGCTTCCTAGGTTTGTTTTTAACTAAAAAATATCT
CCATTGATTTAGTAAAAAAACATGATAATGATTATGATCAAGTTACTCAC
TACGCATCTCTTTTTTAACAGGCAATGTCTTAGACGGAGTGCTAAAGTAC
CAAAAACGTTTAAGTCAACCGCTGGGCCAAAGTTTGGATGATCACGTGAT
TTTCACACCTTTATATCTCGATGGATCGGGGTTGGGGATGATGACCACTA
TATCCACAGCTGTATTCAGCAACAAAAATGATAGCGATACCCGAGAGCTG
ATTGGTGTAGCTGGAATGGATATTGTTGTCTCGTTGCTACAACAACAATA
CCCTGTCCAAAAGATGGGCGTTTTCGGACATGCTTTTGCGATCAACAATA
ATGGTTTGTTTTTAATGCATCCCAAGTTTAAAGACCAGTCAGGTTATTTG
CCTGACCCAGCCACCGTTTATTTGGACGAAGTTGAATTTACTACCAATCC
ATCAAAAGGAATCGAGTTAAAACGAGCTATGATCAACAATGAGACGGGAT
GTATGAATGCCGAAGCTGATTGGCTGTTTCCTAAGCATTCCAGTCAACGA
GTGGTCCGTTTAAACAATACCTATTGTTATCGACCAATGGAAAAGACTCC
TTTCTTCGCAGGTGTTTCTATGCCACAACAAAACGCTATACAGATGGTGG
CTGATAAAACGAAAGCTCATTTATTCCGTCGATCAGGTATCAATGCGTTA
CATTCTGATGATCCGAATGTCATCATTGAAGTTGCTGAATGGTCTTTTTG
TGACATTCGAACGGAAGGTGAAAAGAAACAACCCGCTTCCATCAAGTATT
ATCCAACAGCTGAAGACTTGTATCAGTACTTGAAAAACAATGATGAAGAT
CTAGACGAAAAATGTGACGAGGAGATGTTGTTAACTTTACTTCTATCAGC
ATCAGTGGTCGCAAACTTCACCAGAGATCACTGGTCTGTTGAAGAGCTCA
CTCATAACAACATCACTGACGCTTATATTATCACCTCTTCCGGTTTCACC
TACATCTTATCGACAGATGTCAACAATACTAAACGATTGGATCGAGACAT
CTTTGAAGAGATTCGATTCACACATCCCGCATCATTCTACCAAAAAGAAT
TTCATAATCAGCTGACTTTCAGCGTCGACATCAAATCAGGAAAACCACAG
AATCTCCATGATAAAGAGGTCTTCAATAACGAGGAGATTGGGAATATAGC
GATTGGTAAATCAGTTTACACGGGAGATGAAAATACGATGCTTGGAGTCG
TCGGAATGTCAGTCCGAGTGGATTTTATGAATAGAATCATGCACGAGGCT
GCACAAAATATCACTGATTCTGATTGCAGTAAAAATTCATCACAAAAATG
TTACTTAATTGATGAAAATGGGTATATTGTTGCTACAAATAGACCAGTTA
ATCGGGTCGGTTATTTTCTTGGTTGGTATGAAGGCCAACTCATCGAGGAC
ATGGAAAAAAGAGAAATTTTGGAAGTGCGAGAATACAACGATACACAAGC
AGAATGTCCACAACAATCGGATACTTCATCCTCCTCTCCAGCTAATATCT
TGAAAACATTTTACTACACTGTCTTTCAGTTAGTATACAACGTGTTGGCA
CATACATTAGCAATCACGTGGTGGATGTTGACTAGCCTACTGACCGTCAG
TATGAACGCTATTGGGGTTTCAGCGGCTAGTAGAAATGTCAGTTGTACCA
AAACTATCGAAATCTATTTACTTAAAAACAGAAGTATTGATACAGAGGGA
GCTTTTAATTGCTCCTCTAATTGCAGTCAAAAATATATCATCCAAAGTAT
TCCAGATACTAACTTAGCTCAGGTCATAATAAATAACAATTGCCGTGGGG
CTGACGAATGTCCATTATTTTCAAAAAACAATGAGCCGAAACGGACAAGG
GATCTCACTGTATGTGAGCAGCCTCTTCGCTATCGAAGGGCTTTGTCAGT
TTGTTATAAATTGACTGGAGAAGACAAACGAGCGTGTTTTGATGTTAATG
AGAACAAAGAATCGAACATTATCATTTATCTTATCGTATTCATTTCCATC
TGTTTTGCAATCATTATAGCGATTAGTTTTAATATGTATTTTCGTAAATA
TTTTCATGGCAGGTGTATGTAAGATATCTAGATAATTCTTAATTCTTGTG
CCAATTCTTAAAAAAATGGAAAGGGAATGTTGCTTTCCTTAAGCATTGGA
CCAATGCTTAAGTAAGATTTTAGACATTAAAGGTAAAATACTCGGCGCAC
AGATATGGCATGGGAGAGTGAAGGAAAGAGATAAATATTTGTAGGGGTCT
GGACACACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029939XLOC_029939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046932-exon-scaffold_118-1575043694:262327..263073TCONS_00046932-exon-scaffold_118-1575043694:262327..263073Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1575043694:254091..254454TCONS_00046932-exon-scaffold_118-1575043694:254091..254454Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1575043694:253465..253696TCONS_00046932-exon-scaffold_118-1575043694:253465..253696Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1575043694:250863..253102TCONS_00046932-exon-scaffold_118-1575043694:250863..253102Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1510915933:262327..263073TCONS_00046932-exon-scaffold_118-1510915933:262327..263073Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1510915933:254091..254454TCONS_00046932-exon-scaffold_118-1510915933:254091..254454Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1510915933:253465..253696TCONS_00046932-exon-scaffold_118-1510915933:253465..253696Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1510915933:250863..253102TCONS_00046932-exon-scaffold_118-1510915933:250863..253102Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1491911889:262327..263073TCONS_00046932-exon-scaffold_118-1491911889:262327..263073Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1491911889:254091..254454TCONS_00046932-exon-scaffold_118-1491911889:254091..254454Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1491911889:253465..253696TCONS_00046932-exon-scaffold_118-1491911889:253465..253696Clytia hemisphaericaexon
TCONS_00046932-exon-scaffold_118-1491911889:250863..253102TCONS_00046932-exon-scaffold_118-1491911889:250863..253102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:250863..263073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0155409	0.0421281	0	0	0	0.084219	0	0.0601405	0	0	0	0.0878009	0.280431	0	0.110133	0.762974	0.276048	0.358623	0.768352	0.885285	1.19044	0.0759412	0.579148	0.62218	0.805323	0.0923414	0.0732356	0.0333276	0
Blast
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BLAST of TCONS_00046932 vs. Swiss-Prot (Human)
Match: CA2D4 (Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Homo sapiens GN=CACNA2D4 PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 6.366e-95
Identity = 259/993 (26.08%), Postives = 463/993 (46.63%), Query Frame = 2 
Query:  356 ICRTFVDDLYSLLKEKQDEVDNIKQGAQDLEESYSFDEEIEPFNYFH-----RKNDPPNLVGVHIPFSLQ-------VAVNITRSHVQVPTEIFKNDKQVLNNARMSEGLDETFMSNYEKDPALLWQYFCSEAGVHRVFPG---ENSNRKIDLYDCRRRLWYNQAINSPKDVVILMDMSGSMTGAHFKISKLIVQSLLDTLQQDDFFNVLYFNQATGFLIDCLNDTLAQATSYNKNQFKQAVTRLQSPKSVANFPTALKKAFRLINKVSTHRATSSSSCNKVIMLISDGIDFDEHTHEILDDEN-AEKEVVIFSYIVGQSTDEGRAEMKDIACQSGGEHYDFPTVGNVLDGVLKYQKRLSQPLGQSLDDHVIFTPLYLD-------GSGLGMMTTISTAVFSNKNDSDTRE-LIGVAGMDIVVSLLQQQYPVQKMGVFGHAFAINNNGLFLMHPK----FKDQSGYLPDP--ATVYLDEVEFTTNPSKGIELKRAMINNETGCMNAEADWLFPKHSSQRVVRLNNTYCYRPMEKTPFFAGVSMPQQNAIQMVADKTKAHLFRRSGI-NALHSDDPNVIIEVAEWSFCDIRTEGEKKQPASIKYYPTAEDLYQYLKNNDEDLDEKCDEEMXXXXXXSASVVANFTRDHWS-----VEELTHNNITDAYIITSSGF----TYILSTDVNNTKRL----DRDIFEEIRFTHPASFYQKEFHNQLTFSVDIKSGK-PQNLHDKEVFNNEEIGNIAIGKSVYTGDENTMLGVVGMSVRVDFMNRIMHEAAQNIT--DSDCSK---NSSQKCYLIDENGYIVATNRPVNRVGYFLGWYEGQLIEDMEKREILEVREYNDTQAECPQQSDTSSSSPANILKTFYYTVFQLVYNVLAHTLAITWWMLTSLLTVSMNAIGVSAASRN-------VSCTKTIEIYLLKNRSIDTEGAFNCSSNCSQKYIIQSIPDTNLAQVIINNNCRGADECPLFSKNNEPK 3163
            + R F +D+ ++L+ K + V N+ + A++ + ++ F+E +  F+Y++      +++  N V +   F L+       + VN + S VQ+PT ++  D  +LN   MSE L+  F+ N+++DP L WQYF S  G  R++PG         +  +DCR R WY QA  SPKD+VIL+D+SGSM G    I+K  + ++LDTL ++DF N++ +N    ++  C    L QA   N+  FK  V  L   K V     AL++AF+++ +     A   S CN+ IMLISDG    E    + +  N  + +V +F+Y++G+        MK IAC + G +    T+ +  + V++Y   LS+P+  + D  +I+T  Y+D          L ++TT++  VFS KN++ +   L+GV G D+ +  L +  P  K+GV G+AF   NNG  L HP     +++     P P   +V L EVE+     +   L+ AMIN ETG ++ +     P    +RV+ L N Y +  +  TPF  GV + + +   ++   T        G+ + LH D    +    +W +C    + + ++ + +      E + ++L   D DL+  CDEE++  +L  A V A     +W+     + E + + +  A++ T +G      ++ S  V++ K L    +  +F   RF  P  + Q   H   +F  +++  + P++  +  V        + + K         +    G+ ++++F+ R    A +  +  D  C++   +S   C++ID NG+I+ + R     G FLG  +G ++  +    +       D QA C   S   S++   +     +               + W +  S       A  V   S           C     +++ +    +  G   C   C + +++Q IP++NL  ++ +  C  +   P+  +  E K
Sbjct:  122 LVRKFSEDMENMLRRKVEAVQNLVEAAEEADLNHEFNESLV-FDYYNSVLINERDEKGNFVELGAEFLLESNAHFSNLPVNTSISSVQLPTNVYNKDPDILNGVYMSEALNAVFVENFQRDPTLTWQYFGSATGFFRIYPGIKWTPDENGVITFDCRNRGWYIQAATSPKDIVILVDVSGSMKGLRMTIAKHTITTILDTLGENDFINIIAYNDYVHYIEPCFKGILVQADRDNREHFKLLVEELMV-KGVGVVDQALREAFQILKQF--QEAKQGSLCNQAIMLISDGA--VEDYEPVFEKYNWPDCKVRVFTYLIGREVSFAD-RMKWIACNNKGYYTQISTLADTQENVMEYLHVLSRPMVINHDHDIIWTEAYMDSKLLSSQAQSLTLLTTVAMPVFSKKNETRSHGILLGVVGSDVALRELMKLAPRYKLGVHGYAFLNTNNGYILSHPDLRPLYREGKKLKPKPNYNSVDLSEVEWE---DQAESLRTAMINRETGTLSMDVK--VPMDKGKRVLFLTNDYFFTDISDTPFSLGVVLSRGHGEYILLGNTSVE----EGLHDLLHPD----LALAGDWIYCITDIDPDHRKLSQL------EAMIRFLTRKDPDLE--CDEELVREVLFDAVVTAPM-EAYWTALALNMSEESEHVVDMAFLGTRAGLLRSSLFVGSEKVSDRKFLTPEDEASVFTLDRF--PLWYRQASEHPAGSFVFNLRWAEGPESAGEPMVVTASTAVAVTVDK------RTAIAAAAGVQMKLEFLQRKFWAATRQCSTVDGPCTQSCEDSDLDCFVIDNNGFILISKRS-RETGRFLGEVDGAVLTQLLSMGVFSQVTMYDYQAMCKPSSHHHSAAQPLVSPISAFLTATRWLLQELVLFLLEWSVWGSWYDRGAEAKSVFHHSHKHKKQDPLQPCDTEYPVFVYQPAIREANGIVECGP-CQKVFVVQQIPNSNLLLLVTDPTCDCSIFPPVLQEATEVK 1075
The following BLAST results are available for this feature:
BLAST of TCONS_00046932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CA2D46.366e-9526.08Voltage-dependent calcium channel subunit alpha-2/... [more]
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