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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046937 ID=TCONS_00046937|Name=TCONS_00046937|organism=Clytia hemisphaerica|type=transcript|length=841bp
AGAAAAACTTCGAAAACGGGATTGGAaagattgattttctttttaataga
AATtgtgaaagaatttttttgtctTCGGTTTgaattttagattatttttc
cTTTCTGATATTCATTTgatgactgaaaaaaaaattgtgtaaatttaaat
gaaaagaatgtcatgagaaattgactttttgttttgaaaataatttgata
ccaattttaaagaaataatttcaaatagAAATTATGAATTTAAGACTGTT
TATCTAAGGTTGCAAAGGTGCTTCTCTATTCTGATTGGCttacaatttta
attttttgcaatcTGAACcaatgaaattcaatatttcaatCATATGGTTT
TGGTATTCAATCACATTGATGTCGAAGTATGGTCATTCATCGACGTACGA
AGGATACCATTGTTACCAGTGCAAAGCTGAAGATGAGCAGCAATGTGAAA
AGAGCTTCAAAACCAAGTCCTGTAAACTCGGATGTGCAATCACTTCTTAT
CGATTCCGATCCGTTTTCTCGGAGAATCGGGTAATCGAGGAAACGCGTTT
CGAGAAGAAATGTTGGAAAGCAAACGATAAAGACTTTTGTGACCATTTAA
AGATTGTCAATAAAGGCGTCACTTCATGCTTTGCGAGAGGATGCAAACTC
AACCAATGCAACTGGAATATCAAAAGCTTAACGGACATTGCTGATTACGG
ACGTTATCGGATGAATTCAAGCTCAAGGATAAACAATCACCACCATCTCA
TCTGTTTAATCATTAtgacatttttgtttgtttctttgtatATACTTGTG
TTCtcaatcaaatgaaaaagtagaaTTAGTATTTTAAAAAC Run BLAST on NCBI protein sequence of TCONS_00046937-protein >TCONS_00046937-protein ID=TCONS_00046937-protein|Name=TCONS_00046937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MKFNISIIWFWYSITLMSKYGHSSTYEGYHCYQCKAEDEQQCEKSFKTKS
CKLGCAITSYRFRSVFSENRVIEETRFEKKCWKANDKDFCDHLKIVNKGV
TSCFARGCKLNQCNWNIKSLTDIADYGRYRMNSSSRINNHHHLICLIIMT
FLFVSLYILVFSIK Run BLAST on NCBI transcript from alignment at scaffold_118:335464..337609- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046937 ID=TCONS_00046937|Name=TCONS_00046937|organism=Clytia hemisphaerica|type=transcript|length=2146bp|location=Sequence derived from alignment at scaffold_118:335464..337609- (Clytia hemisphaerica)
AGAAAAACTTCGAAAACGGGATTGGAAAGATTGATTTTCTTTTTAATAGA
AATTGTGAAAGAATTTTTTTGTCTTCGGTTTGAATTTTAGATTATTTTTC
CTTTCTGATATTCATTTGATGACTGAAAAAAAAATTGTGTAAATTTAAAT
GAAAAGAATGTCATGAGAAATTGACTTTTTGTTTTGAAAATAATTTGATA
CCAATTTTAAAGAAATAATTTCAAATAGAAATTATGAATTTAAGACTGTT
TATCTAAGGTTGCAAAGGTGCTTCTCTATTCTGATTGGCTTACAATTTTA
ATTTTTTGCAATCTGAACCAATGAAATTCAATATTTCAATCATATGGTTT
TGGTATTCAATCACATTGATGTCGAAGTATGGTAAGTCACATTGTAATGA
ATTACCCAAATCAAACATTCCAGATTTCAGGGTGGAGTCAATGATCTTTG
TGGGCATAAATAATTTGGGTCGAAATAATACCCTTTTTCCAGATCGTTAA
ACTTTTTTTGGGAACACCGATCAATTTGAGCATAATCGTATTGTATTTCC
AATATTTTTTTCTGATCCTTAAAATAAATATTACCAAGACCTTGCGCAAA
TGTTGCTCTTCTGCTGTCATGCACACTCGTCATATGTCATGATCTTCTGT
CCCCAATTTCCTCGATAAAGGAGACCAATTTTATTTAGGATAGACACAAT
GAAGCGTTTTTCAATGACTTTACTGGGCATATAAGATATATCAAAAGTTA
AGTCAGAACATCCTCAAAAGTAGACCAAGTAATTGTGAAATGAAGTCACT
GATATCACTCTCTGATTCAAAATTCCTGAGCACCGAGTTTCCCATAATTC
TGGCAATCAAAAAAAACGTAGGTCTCTTTTGTTCTATACTTTGAATTCGA
GAAGAGTCGATTAAAGAAGTCAAGTCAAATAATTTCCAATCCAACTTTTA
GGTCATTCATCGACGTACGAAGGATACCATTGTTACCAGTGCAAAGCTGA
AGATGAGCAGCAATGTGAAAAGAGCTTCAAAACCAAGTCCTGTAAACTCG
GATGTGCAATCACTTCTTATCGATTCCGATCCGTTTTCTCGGAGAATCGG
GTAATCGAGGAAACGCGTTTCGAGAAGAAATGTTGGAAAGCAAACGATAA
AGACTTTTGTGACCATTTAAAGATTGTCAATAAAGGCGTCACTTCATGCT
TTGTAAGTCGTTCATTTTGATATCAGATTTTTTTTCCATCAACCTTTTTT
CAAGTACATTAAAACCCCAAATCAATGGGCACTCTAAAAGGTGGACACCT
TTGACAATTTTCTTCGGTGTCCGCTAATTGGAGGTTCCACTGTATTTCCA
ACAAGTAAAAGGTTGATCTCCTTCCTTTGCTTGCAATCAAGTTTGTCAAT
GACCAAACTATTAGTTAAAATAAGCTTTCGTCCAGAAAAAAAATATACCA
AATTCGAAAAGCAGGATCCGACTCTTAATTCGTCGTAATATCATGATCAT
CAGCAGCTTAACAAAACAATTACCTATTATGCGGCTACCCCATGTTACGG
ACGTGGTAAGGCCTAAATAGGCATTGGGAAAACCGTCATCATTGGGAAAA
ATAGCTAAGTAGAATTTCATTATATGAAAGAATAGCTTGAAACATCAGGC
TTATTTGGGGAAAAATCAAATTTTGGAAGAAAAATCTATACTTCTAAATT
TCCGCTATAAACAATAGATATTTTTACTTCGGTTGGTGTATAGGTGGATC
ATTATCGAGCGATCAACCTCAATGAAGTGAATACATAAGAGGCAATATTC
ACGATCAACCTCAATAATGAAATTATTCACCATAGGTCAACGAAACCAGG
GTGCATATTTCCCTGAACTTTATTTTGGCCTGTGGTTTTAAAAATAGGTC
AGTGCTTAATTTACTGTTAATTTACTTCTTTGTGTAGGCGAGAGGATGCA
AACTCAACCAATGCAACTGGAATATCAAAAGCTTAACGGACATTGCTGAT
TACGGACGTTATCGGATGAATTCAAGCTCAAGGATAAACAATCACCACCA
TCTCATCTGTTTAATCATTATGACATTTTTGTTTGTTTCTTTGTATATAC
TTGTGTTCTCAATCAAATGAAAAAGTAGAATTAGTATTTTAAAAAC Coding sequence (CDS) from alignment at scaffold_118:335464..337609- >TCONS_00046937 ID=TCONS_00046937|Name=TCONS_00046937|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_118:335464..337609- (Clytia hemisphaerica)
GCGAGAGGATGCAAACTCAACCAATGCAACTGGAATATCAAAAGCTTAAC
GGACATTGCTGATTACGGACGTTATCGGATGAATTCAAGCTCAAGGATAA
ACAATCACCACCATCTCATCTGTTTAATCATTATGACATTTTTGTTTGTT
TCTTTGTATATACTTGTGTTCTCAATCAAATGAGTCATTCATCGACGTAC
GAAGGATACCATTGTTACCAGTGCAAAGCTGAAGATGAGCAGCAATGTGA
AAAGAGCTTCAAAACCAAGTCCTGTAAACTCGGATGTGCAATCACTTCTT
ATCGATTCCGATCCGTTTTCTCGGAGAATCGGGTAATCGAGGAAACGCGT
TTCGAGAAGAAATGTTGGAAAGCAAACGATAAAGACTTTTGTGACCATTT
AAAGATTGTCAATAAAGGCGTCACTTCATGCTTTATGAAATTCAATATTT
CAATCATATGGTTTTGGTATTCAATCACATTGATGTCGAAGTATGGCGAG
AGGATGCAAACTCAACCAATGCAACTGGAATATCAAAAGCTTAACGGACA
TTGCTGATTACGGACGTTATCGGATGAATTCAAGCTCAAGGATAAACAAT
CACCACCATCTCATCTGTTTAATCATTATGACATTTTTGTTTGTTTCTTT
GTATATACTTGTGTTCTCAATCAAATGAGTCATTCATCGACGTACGAAGG
ATACCATTGTTACCAGTGCAAAGCTGAAGATGAGCAGCAATGTGAAAAGA
GCTTCAAAACCAAGTCCTGTAAACTCGGATGTGCAATCACTTCTTATCGA
TTCCGATCCGTTTTCTCGGAGAATCGGGTAATCGAGGAAACGCGTTTCGA
GAAGAAATGTTGGAAAGCAAACGATAAAGACTTTTGTGACCATTTAAAGA
TTGTCAATAAAGGCGTCACTTCATGCTTTATGAAATTCAATATTTCAATC
ATATGGTTTTGGTATTCAATCACATTGATGTCGAAGTATGGCGAGAGGAT
GCAAACTCAACCAATGCAACTGGAATATCAAAAGCTTAACGGACATTGCT
GATTACGGACGTTATCGGATGAATTCAAGCTCAAGGATAAACAATCACCA
CCATCTCATCTGTTTAATCATTATGACATTTTTGTTTGTTTCTTTGTATA
TACTTGTGTTCTCAATCAAATGAGTCATTCATCGACGTACGAAGGATACC
ATTGTTACCAGTGCAAAGCTGAAGATGAGCAGCAATGTGAAAAGAGCTTC
AAAACCAAGTCCTGTAAACTCGGATGTGCAATCACTTCTTATCGATTCCG
ATCCGTTTTCTCGGAGAATCGGGTAATCGAGGAAACGCGTTTCGAGAAGA
AATGTTGGAAAGCAAACGATAAAGACTTTTGTGACCATTTAAAGATTGTC
AATAAAGGCGTCACTTCATGCTTTATGAAATTCAATATTTCAATCATATG
GTTTTGGTATTCAATCACATTGATGTCGAAGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046937-exon-scaffold_118-1575043694:337229..337609 | TCONS_00046937-exon-scaffold_118-1575043694:337229..337609 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1575043694:336408..336658 | TCONS_00046937-exon-scaffold_118-1575043694:336408..336658 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1575043694:335464..335672 | TCONS_00046937-exon-scaffold_118-1575043694:335464..335672 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1510915933:337229..337609 | TCONS_00046937-exon-scaffold_118-1510915933:337229..337609 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1510915933:336408..336658 | TCONS_00046937-exon-scaffold_118-1510915933:336408..336658 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1510915933:335464..335672 | TCONS_00046937-exon-scaffold_118-1510915933:335464..335672 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1491911889:337229..337609 | TCONS_00046937-exon-scaffold_118-1491911889:337229..337609 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1491911889:336408..336658 | TCONS_00046937-exon-scaffold_118-1491911889:336408..336658 | Clytia hemisphaerica | exon |
| TCONS_00046937-exon-scaffold_118-1491911889:335464..335672 | TCONS_00046937-exon-scaffold_118-1491911889:335464..335672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:335464..337609 - |
Blast
The following BLAST results are available for this feature:
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