TCONS_00046950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046950
Unique NameTCONS_00046950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046950 ID=TCONS_00046950|Name=TCONS_00046950|organism=Clytia hemisphaerica|type=transcript|length=235bp
tggaCTTGGGTGACGTTGGGGTGTTGGGTTACTACGTAACCTTGGCAAGT
CAGTAGGCAGTTACTTAGATACATCCCCTAAGGTCAAGGATCCAGTTAGA
TCTGGATTAGGTTCGCACACTGTAGTCCAAACGGTGTTAAGGTTCGCCAG
GGCAACCTCCCTGTTTATATCAACCTCCGTCATCAAAACGGGGCTAGGGG
GCGACACCTGTCATCAAAACAGGCTAGGAAAACAG
Run BLAST on NCBI

transcript from alignment at scaffold_118:202265..202499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046950 ID=TCONS_00046950|Name=TCONS_00046950|organism=Clytia hemisphaerica|type=transcript|length=235bp|location=Sequence derived from alignment at scaffold_118:202265..202499 (Clytia hemisphaerica)
CTGTTTTCCTAGCCTGTTTTGATGACAGGTGTCGCCCCCTAGCCCCGTTT
TGATGACGGAGGTTGATATAAACAGGGAGGTTGCCCTGGCGAACCTTAAC
ACCGTTTGGACTACAGTGTGCGAACCTAATCCAGATCTAACTGGATCCTT
GACCTTAGGGGATGTATCTAAGTAACTGCCTACTGACTTGCCAAGGTTAC
GTAGTAACCCAACACCCCAACGTCACCCAAGtcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029952XLOC_029952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046950-exon-scaffold_118-1491911889:202265..202499TCONS_00046950-exon-scaffold_118-1491911889:202265..202499Clytia hemisphaericaexon
TCONS_00046950-exon-scaffold_118-1510915933:202265..202499TCONS_00046950-exon-scaffold_118-1510915933:202265..202499Clytia hemisphaericaexon
TCONS_00046950-exon-scaffold_118-1575043694:202265..202499TCONS_00046950-exon-scaffold_118-1575043694:202265..202499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:202265..202499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.359436	0.411869	0	1.39496	3.53299	2.35328	3.69006	4.80522	2.97328	2.46807	4.66128	0	3.50098	0.324453	3.62289	1.81233	0.820337	1.52386	6.03571	5.29462	2.98233	0.382753	2.40001	0.863629	7.795	0	3.2626	2.16581	4.78142	1.42229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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