TCONS_00046955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046955
Unique NameTCONS_00046955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046955 ID=TCONS_00046955|Name=TCONS_00046955|organism=Clytia hemisphaerica|type=transcript|length=435bp
CCCCAGAAGAGTCTAGCATAcccacacccctgtttcacattAACAGGCTA
GGTTAGGTTGATAGAAAATTCGCCCAAAAAACCCAGTGTACATATTCCGT
TGTTTTACGGACATTATAAAagaacgttgttttgacgtttaggGTCCATA
GAATACCCGTCTCAAGTATCCACTGGACTTCTACTACTGCCCTATGAAAA
GCTAACTTTTTCCAGTTTATTCGCAGTGATACTGGGTGTGATATAGCTGA
GCCGATAAAAAGAGTAGAGAAATTAACCTGTTCatcgtatatttttgttt
tcccgTTATTTCAGGTGGTACTGAACAATCTTAGATACCTGAGAGGCGGG
AGAAGATTATCAATAACGCTCTGGTTAACTCTAAGATTTGTCGACAAAAT
GATAAGAGAAAACGTATGATATACCCttgtatcag
Run BLAST on NCBI

transcript from alignment at scaffold_118:295561..295995

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046955 ID=TCONS_00046955|Name=TCONS_00046955|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_118:295561..295995 (Clytia hemisphaerica)
ctgatacaaGGGTATATCATACGTTTTCTCTTATCATTTTGTCGACAAAT
CTTAGAGTTAACCAGAGCGTTATTGATAATCTTCTCCCGCCTCTCAGGTA
TCTAAGATTGTTCAGTACCACCTGAAATAAcgggaaaacaaaaatatacg
atGAACAGGTTAATTTCTCTACTCTTTTTATCGGCTCAGCTATATCACAC
CCAGTATCACTGCGAATAAACTGGAAAAAGTTAGCTTTTCATAGGGCAGT
AGTAGAAGTCCAGTGGATACTTGAGACGGGTATTCTATGGACcctaaacg
tcaaaacaacgttctTTTATAATGTCCGTAAAACAACGGAATATGTACAC
TGGGTTTTTTGGGCGAATTTTCTATCAACCTAACCTAGCCTGTTaatgtg
aaacaggggtgtgggTATGCTAGACTCTTCTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029957XLOC_029957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046955-exon-scaffold_118-1491911889:295561..295995TCONS_00046955-exon-scaffold_118-1491911889:295561..295995Clytia hemisphaericaexon
TCONS_00046955-exon-scaffold_118-1510915933:295561..295995TCONS_00046955-exon-scaffold_118-1510915933:295561..295995Clytia hemisphaericaexon
TCONS_00046955-exon-scaffold_118-1575043694:295561..295995TCONS_00046955-exon-scaffold_118-1575043694:295561..295995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:295561..295995 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.474563	0.381617	0.533226	0.181319	1.27019	0.16817	1.00912	1.4022	0.52914	1.1992	1.59043	0.641865	0.451973	0.108424	0.283918	0.0956599	0	0.362362	0.500623	1.09816	0.460034	0.666289	0.539975	0	0.842719	0.45517	0.230838	0	0.696947	0.35504
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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