TCONS_00046973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046973
Unique NameTCONS_00046973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046973 ID=TCONS_00046973|Name=TCONS_00046973|organism=Clytia hemisphaerica|type=transcript|length=1318bp
CTAGAAGTAAAAAGAAGTGAATTTCAAGCAGGAGACATGTCTTCGTACAT
TTCCATAGCAAATGCTATCAAGGAGATTGAGTATTGGCTTCGATTAGCCA
CCTTACTGCATGAACCACTCAAAGAATCGCTGCTCAACATCCTTCATAAT
CACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCTACCTTTCT
CAACGCTGAGCTACGAAAACACCAACATAGAATCAACCAAATGCAAACTA
AAAGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAACCGGGAGT
ACACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATATTTTTGAT
TATCGAGTTCACAAACCTTCCTCCGCCCAGCAGAGGTTGGAAAAAAGATC
CATTATATACCGATACAAGTTTAGCAGCTTTCGTTTTACGTGCTCGCAAA
TGGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTTTGAACGA
TTTCAATAATCGATGGACTGAAGGCGTTAATATAATTCATGGTCTGTTTT
TTGTCAATTACGATACAAATAGACTGAAAACTATGACTTTAGATGTACAC
AACAGAACTGtatttaaatctttaaaatttttctctaaaaagatTATCGG
AAAGCAAACCGCTCATGACACTCAACTTGCCGCCCATGACACTCAACTTG
CCGCCCATGACACTCAACTTGCCAACCATGACAATAAACTCGCCGCCCAT
GGCACTCAACTTGCCACCCAAGACAATAAACTCACCGCCCATGACAACCA
ACTTACCACACAAGACAATAAACTCACCGCCCATGACAACCAACTTACCA
TTCAAGACAGTAAACTAACCGCCCATGACAACCAACTTACCACACAAGAC
AATAAACTCACCGCCCATGACAACCAACTTACCACACAAGACAATAAACT
TACCGCCCATGACAACCAACTTACCACACAAGACAATAAACTTACCGCCC
ATGATAACCAACTTACCGCCCAAGACAATAAACTTACCGCCCATGACAAC
CACCTTACCACCCAAGACAATAAACTCACCACCCATGACAACCAACTTAC
CGTTCATGATGACCTTCTTACCATCCATAACAACCATCTTACCGCCCATG
AAAACCAACTTACCGCCAACAACAACCATCTCACTACCCATAACAATCAG
CTCAATGTGTTAACCGAGAGACTTTCAGAAGATGAGTCGAAGTTCGTTGA
AATGGTGGACCGTCTGGAGAAGGAACTAAATTTCATCAAAGATAATCTTA
AGGGAAACCAGATCAACG
Run BLAST on NCBI

protein sequence of TCONS_00046973-protein

>TCONS_00046973-protein ID=TCONS_00046973-protein|Name=TCONS_00046973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
LEVKRSEFQAGDMSSYISIANAIKEIEYWLRLATLLHEPLKESLLNILHN
HYNRTDYVGLPSNPTFLNAELRKHQHRINQMQTKRVLNKDQVELLLPTGS
TQTDSSTFDVTLIIFLIIEFTNLPPPSRGWKKDPLYTDTSLAAFVLRARK
WRNDLLHDDPKSITLNDFNNRWTEGVNIIHGLFFVNYDTNRLKTMTLDVH
NRTVFKSLKFFSKKIIGKQTAHDTQLAAHDTQLAAHDTQLANHDNKLAAH
GTQLATQDNKLTAHDNQLTTQDNKLTAHDNQLTIQDSKLTAHDNQLTTQD
NKLTAHDNQLTTQDNKLTAHDNQLTTQDNKLTAHDNQLTAQDNKLTAHDN
HLTTQDNKLTTHDNQLTVHDDLLTIHNNHLTAHENQLTANNNHLTTHNNQ
LNVLTERLSEDESKFVEMVDRLEKELNFIKDNLKGNQIN
Run BLAST on NCBI

transcript from alignment at scaffold_119:177152..178889+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046973 ID=TCONS_00046973|Name=TCONS_00046973|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at scaffold_119:177152..178889+ (Clytia hemisphaerica)
CTAGAAGTAAAAAGAAGTGAATTTCAAGCAGGAGACATGTCTTCGTACAT
TTCCATAGCAAATGCTATCAAGGAGATTGAGTATTGGCTTCGATTAGCCA
CCTTACTGCATGAACCACTCAAAGAATCGCTGCTCAACATCCTTCATAAT
CACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCTACCTTTCT
CAACGCTGAGCTACGAAAACACCAACATAGAATCAACCAAATGCAAACTA
AAAGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAACCGGGAGT
ACACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATATTTTTGAT
TATCGAGTTCACAAACCTTCCTCCGCCCAGCAGAGGTTGGAAAAAAGATC
CATTATATACCGATACAAGTTTAGCAGCTTTCGTTTTACGTGCTCGCAAA
TGGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTTTGAACGA
TTTCAATAATCGATGGACTGAAGGCGTTAATATAATTCATGGTCTGTTTT
TTGTCAATTACGATACAAATAGACTGAAAACTATGACTTTAGATGTACAC
AACAGAACTGtatttaaatctttaaaatttttctctaaaaagatTATCGG
AAAGCAAACCGCTCATGACACTCAACTTGCCGCCCATGACACTCAACTTG
CCGCCCATGACACTCAACTTGCCAACCATGACAATAAACTCGCCGCCCAT
GGCACTCAACTTGCCACCCATGACAATAAACTGACCACCCATGACAACCA
ACTTACAATTCAAGACAATAAACTCACCGCCCATGACAACCAACTTACCA
TTCAAGACAGTAAACTAACCGCCCATGACAACCAACTTACCACACAAGAC
AATAAACTCACCGCCCATGACAACCAACTTACCACACAAGACAATAAACT
GACCACCCATGACAACCAACTTACCAAACAAGACAATAAACTGACCACCC
ATGACAACCAACTTACCATTCAAGACAATAAACTCACCGCCCATGACAAC
CAACTTACCATTCAAAACAATAAACTCACCGCCCATGACAACCAACTTAC
CATTCAAAACAATAAACTCACCGCCCATGACAACCAACTTACCATTCAAG
ACAGTAAACTAACCGCCCATGACAACCAACTTACCACACAAGACAATAAA
CTCACCGCCCATGACAACCAACTTACCACACAAGACAATAAACTCACCGC
CCATGACAACCAACTTACCATTCAAGACAGTAAACTAACCGCCCATGACA
ACCAACTTACCACACAAGACAATAAACTCACCGCCCATGACAACCAACTT
ACCACACAAGACAATAAACTTACCGCCCATGACAACCAACTTACCACACA
AGACAATAAACTTACCGCCCATGATAACCAACTTACCGCCCAAGACAATA
AACTTACCGCCCATGACAACCACCTTACCACCCAAGACAATAAACTCACC
ACCCATGACAACCAACTTACCGTTCATGATGACCTTCTTACCATCCATAA
CAACCATCTTACCGCCCATGAAAACCAACTTACCGCCAACAACAACCATC
TCACTACCCATAACAATCAGCTCAATGTGTTAACCGAGAGACTTTCAGAA
GATGAGTCGAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAACTAAA
TTTCATCAAAGATAATCTTAAGGGAAACCAGATCAACG

Coding sequence (CDS) from alignment at scaffold_119:177152..178889+

>TCONS_00046973 ID=TCONS_00046973|Name=TCONS_00046973|organism=Clytia hemisphaerica|type=CDS|length=2634bp|location=Sequence derived from alignment at scaffold_119:177152..178889+ (Clytia hemisphaerica)
CTAGAAGTAAAAAGAAGTGAATTTCAAGCAGGAGACATGTCTTCGTACAT
TTCCATAGCAAATGCTATCAAGGAGATTGAGTATTGGCTTCGATTAGCCA
CCTTACTGCATGAACCACTCAAAGAATCGCTGCTCAACATCCTTCATAAT
CACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCTACCTTTCT
CAACGCTGAGCTACGAAAACACCAACATAGAATCAACCAAATGCAAACTA
AAAGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAACCGGGAGT
ACACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATATTTTTGAT
TATCGAGTTCACAAACCTTCCTCCGCCCAGCAGAGGTTGGAAAAAAGATC
CATTATATACCGATACAAGTTTAGCAGCTTTCGTTTTACGTGCTCGCAAA
TGGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTTTGAACGA
TTTCAATAATCGATGGACTGAAGGCGTTAATATAATTCATGGTCTGTTTT
TTGTCAATTACGATACAAATAGACTGAAAACTATGACTTTAGATGTACAC
AACAGAACTGtatttaaatctttaaaatttttctctaaaaagatTATCGG
AAAGCAAACCGCTCATGACACTCAACTTGCCGCCCATGACACTCAACTTG
CCGCCCATGACACTCAACTTGCCAACCATGACAATAAACTCGCCGCCCAT
GGCACTCAACTTGCCACCCAAGACAATAAACTCACCGCCCATGACAACCA
ACTTACCACACAAGACAATAAACTCACCGCCCATGACAACCAACTTACCA
TTCAAGACAGTAAACTAACCGCCCATGACAACCAACTTACCACACAAGAC
AATAAACTCACCGCCCATGACAACCAACTTACCACACAAGACAATAAACT
TACCGCCCATGACAACCAACTTACCACACAAGACAATAAACTTACCGCCC
ATGATAACCAACTTACCGCCCAAGACAATAAACTTACCGCCCATGACAAC
CACCTTACCACCCAAGACAATAAACTCACCACCCATGACAACCAACTTAC
CGTTCATGATGACCTTCTTACCATCCATAACAACCATCTTACCGCCCATG
AAAACCAACTTACCGCCAACAACAACCATCTCACTACCCATAACAATCAG
CTCAATGTGTTAACCGAGAGACTTTCAGAAGATGAGTCGAAGTTCGTTGA
AATGGTGGACCGTCTGGAGAAGGAACTAAATTTCATCAAAGATAATCTTA
AGGGAAACCAGATCAACCTAGAAGTAAAAAGAAGTGAATTTCAAGCAGGA
GACATGTCTTCGTACATTTCCATAGCAAATGCTATCAAGGAGATTGAGTA
TTGGCTTCGATTAGCCACCTTACTGCATGAACCACTCAAAGAATCGCTGC
TCAACATCCTTCATAATCACTACAATCGAACCGACTATGTTGGCCTCCCA
TCCAACCCTACCTTTCTCAACGCTGAGCTACGAAAACACCAACATAGAAT
CAACCAAATGCAAACTAAAAGAGTTCTTAACAAGGACCAAGTTGAACTTT
TACTGCCAACCGGGAGTACACAAACCGATAGCTCAACCTTTGATGTTACT
TTAATCATATTTTTGATTATCGAGTTCACAAACCTTCCTCCGCCCAGCAG
AGGTTGGAAAAAAGATCCATTATATACCGATACAAGTTTAGCAGCTTTCG
TTTTACGTGCTCGCAAATGGAGAAATGACTTACTACACGATGATCCAAAA
AGTATCACTTTGAACGATTTCAATAATCGATGGACTGAAGGCGTTAATAT
AATTCATGGTCTGTTTTTTGTCAATTACGATACAAATAGACTGAAAACTA
TGACTTTAGATGTACACAACAGAACTGtatttaaatctttaaaatttttc
tctaaaaagatTATCGGAAAGCAAACCGCTCATGACACTCAACTTGCCGC
CCATGACACTCAACTTGCCGCCCATGACACTCAACTTGCCAACCATGACA
ATAAACTCGCCGCCCATGGCACTCAACTTGCCACCCAAGACAATAAACTC
ACCGCCCATGACAACCAACTTACCACACAAGACAATAAACTCACCGCCCA
TGACAACCAACTTACCATTCAAGACAGTAAACTAACCGCCCATGACAACC
AACTTACCACACAAGACAATAAACTCACCGCCCATGACAACCAACTTACC
ACACAAGACAATAAACTTACCGCCCATGACAACCAACTTACCACACAAGA
CAATAAACTTACCGCCCATGATAACCAACTTACCGCCCAAGACAATAAAC
TTACCGCCCATGACAACCACCTTACCACCCAAGACAATAAACTCACCACC
CATGACAACCAACTTACCGTTCATGATGACCTTCTTACCATCCATAACAA
CCATCTTACCGCCCATGAAAACCAACTTACCGCCAACAACAACCATCTCA
CTACCCATAACAATCAGCTCAATGTGTTAACCGAGAGACTTTCAGAAGAT
GAGTCGAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAACTAAATTT
CATCAAAGATAATCTTAAGGGAAACCAGATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029968XLOC_029968Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046973-proteinTCONS_00046973-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046973-exon-scaffold_119-1491911889:177152..177920TCONS_00046973-exon-scaffold_119-1491911889:177152..177920Clytia hemisphaericaexon
TCONS_00046973-exon-scaffold_119-1510915933:177152..177920TCONS_00046973-exon-scaffold_119-1510915933:177152..177920Clytia hemisphaericaexon
TCONS_00046973-exon-scaffold_119-1575043694:177152..177920TCONS_00046973-exon-scaffold_119-1575043694:177152..177920Clytia hemisphaericaexon
TCONS_00046973-exon-scaffold_119-1491911889:178341..178889TCONS_00046973-exon-scaffold_119-1491911889:178341..178889Clytia hemisphaericaexon
TCONS_00046973-exon-scaffold_119-1510915933:178341..178889TCONS_00046973-exon-scaffold_119-1510915933:178341..178889Clytia hemisphaericaexon
TCONS_00046973-exon-scaffold_119-1575043694:178341..178889TCONS_00046973-exon-scaffold_119-1575043694:178341..178889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:177152..178889 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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