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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046999 ID=TCONS_00046999|Name=TCONS_00046999|organism=Clytia hemisphaerica|type=transcript|length=1206bp
NNTGCTTGGAGCAAAAATTCACCCTAACACTTTGCACAAATTCATCCGAG
CAAATGGAATGGTCCCAATAAGGGCACGATACACTAATATGACGGACGAA
GAACTTACGCTGtacatcaaaaatataaatgCCCAATATCCTAACTCTGG
AATCAATGAAGTACgttctatgttgaaaaatttaaagCCATCAATAATAG
TACAGCGAGATCGGGTTGCAAAGCTGTTGGCACATATCGATCCACACGGT
GTCTCAAGACGATGGGCTCAAGTAAAACACGCTGTGTTTACAGTGTTGCA
ACACCAAACTCGTTGTGGCATATAGACACAAACCATAAATTGATAAGgtg
GAACTTTGTCCTTGATGGATGAATAGATGGATATAGCAGACTGGTTGTAC
TTCTTCAGCTCCACATCAACAACCTTGCATCTTCTATGTTATCAGATTTT
CTTACCGCAACAAATTGTTATGGCATTCCAAGTAGGGTTCGTGCTGATAA
GGGTGGCGAATTTAAACACATTCGAAAGTTAATGGATGAGGTTAATGGTC
AAGGTCGTGGTAGTTTTATTGCTGGAAAATCGGTGCACAATGTGAGAATC
GAACGTTTATGGCGTGACGTTTATACAAAAGTATTAGAAAAGTTTCATGA
TTTATTTTATGCAATGGAGGAAAGAAGAGTGTTAGATATTAATAACCATG
TCCATCTAGCTTGTTTACACTATGTATTTGGAAAAAGAATTCAGCAATGT
CTTAACTTCTGGAAATTGGCACATAATGATCACCCTGTTagattagaaaa
aaacaaatctcCTAAACAATTATGGCACAACGCAAGTATGTTGTactcaa
acaaagaaaatactGCCATGACGAATCTTTTTCGCAGAGATCCCAGTGAA
TATGAACCTATTTTTGAACGATTTAGAAACATCTACACCTTACCAGAACC
AGATTCAATTAAAATTGTATTGCCAAGATTTTCTCTGCCTTTGTCTGATG
AACAATTGGGAAGATTGAGCGCATCTATTAACGTTTTACGAGAGAGTAAT
TATGATGGAATTGACATTTATGTTGAAGTTATGAAATTTGTGCACGAGAA
TGTAACAATGTAAATATTAAAATTGTTCTGAATGTCTAGTTTTAAAAAAG
TATGATTGGAAATAAAGATTGTACTGTTTCTGAATTAATGTCTATACTAT
GAAAAT Run BLAST on NCBI protein sequence of TCONS_00046999-protein >TCONS_00046999-protein ID=TCONS_00046999-protein|Name=TCONS_00046999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MLSDFLTATNCYGIPSRVRADKGGEFKHIRKLMDEVNGQGRGSFIAGKSV
HNVRIERLWRDVYTKVLEKFHDLFYAMEERRVLDINNHVHLACLHYVFGK
RIQQCLNFWKLAHNDHPVRLEKNKSPKQLWHNASMLYSNKENTAMTNLFR
RDPSEYEPIFERFRNIYTLPEPDSIKIVLPRFSLPLSDEQLGRLSASINV
LRESNYDGIDIYVEVMKFVHENVTM Run BLAST on NCBI transcript from alignment at scaffold_12:2837..4351- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046999 ID=TCONS_00046999|Name=TCONS_00046999|organism=Clytia hemisphaerica|type=transcript|length=1515bp|location=Sequence derived from alignment at scaffold_12:2837..4351- (Clytia hemisphaerica)
NNTGCTTGGAGCAAAAATTCACCCTAACACTTTGCACAAATTCATCCGAG
CAAATGGAATGGTCCCAATAAGGGCACGATACACTAATATGACGGACGAA
GAACTTACGCTGTACATCAAAAATATAAATGCCCAATATCCTAACTCTGG
AATCAATGAAGTACGTTCTATGTTGAAAAATTTAAAGCCATCAATAATAG
TACAGCGAGATCGGGTTGCAAAGCTGTTGGCACATATCGATCCACACGGT
GTCTCAAGACGATGGGCTCAAGTAAAACACGCTGTGTTTACAGTGTTGCA
ACACCAAACTCGTTGTGGCATATAGACACAAACCATAAATTGATAAGGTT
AGTTTTCGTTATAAAATTCTTGAGGCAAAGAAATGCAATCCACTTAAAAT
AAATTTTCTTATATAATGATCTCTTAAATAGGGCTGAAGGGGTAGGGCAT
AGAGCATGGCAGTTTCCAGGATATAAGGTATTTTTTCCTTGGGATGGTGG
TAACCTAAGGGATAATCAGATGGTTTGTAATATTTGGTATGCGGAAGGTT
TGTGTGATGTAAATATCTCAAACCGTCTGATTATTCCTTTAAGAAAAAGC
ACAGCTGTAACTCAAACTTTTCTGGAGGAATCAAAAATTGTTTTATTTTT
TTTCAGGTGGAACTTTGTCCTTGATGGATGAATAGATGGATATAGCAGAC
TGGTTGTACTTCTTCAGCTCCACATCAACAACCTTGCATCTTCTATGTTA
TCAGATTTTCTTACCGCAACAAATTGTTATGGCATTCCAAGTAGGGTTCG
TGCTGATAAGGGTGGCGAATTTAAACACATTCGAAAGTTAATGGATGAGG
TTAATGGTCAAGGTCGTGGTAGTTTTATTGCTGGAAAATCGGTGCACAAT
GTGAGAATCGAACGTTTATGGCGTGACGTTTATACAAAAGTATTAGAAAA
GTTTCATGATTTATTTTATGCAATGGAGGAAAGAAGAGTGTTAGATATTA
ATAACCATGTCCATCTAGCTTGTTTACACTATGTATTTGGAAAAAGAATT
CAGCAATGTCTTAACTTCTGGAAATTGGCACATAATGATCACCCTGTTAG
ATTAGAAAAAAACAAATCTCCTAAACAATTATGGCACAACGCAAGTATGT
TGTACTCAAACAAAGAAAATACTGCCATGACGAATCTTTTTCGCAGAGAT
CCCAGTGAATATGAACCTATTTTTGAACGATTTAGAAACATCTACACCTT
ACCAGAACCAGATTCAATTAAAATTGTATTGCCAAGATTTTCTCTGCCTT
TGTCTGATGAACAATTGGGAAGATTGAGCGCATCTATTAACGTTTTACGA
GAGAGTAATTATGATGGAATTGACATTTATGTTGAAGTTATGAAATTTGT
GCACGAGAATGTAACAATGTAAATATTAAAATTGTTCTGAATGTCTAGTT
TTAAAAAAGTATGATTGGAAATAAAGATTGTACTGTTTCTGAATTAATGT
CTATACTATGAAAAT Coding sequence (CDS) from alignment at scaffold_12:2837..4351- >TCONS_00046999 ID=TCONS_00046999|Name=TCONS_00046999|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_12:2837..4351- (Clytia hemisphaerica)
ATGTTATCAGATTTTCTTACCGCAACAAATTGTTATGGCATTCCAAGTAG
GGTTCGTGCTGATAAGGGTGGCGAATTTAAACACATTCGAAAGTTAATGG
ATGAGGTTAATGGTCAAGGTCGTGGTAGTTTTATTGCTGGAAAATCGGTG
CACAATGTGAGAATCGAACGTTTATGGCGTGACGTTTATACAAAAGTATT
AGAAAAGTTTCATGATTTATTTTATGCAATGGAGGAAAGAAGAGTGTTAG
ATATTAATAACCATGTCCATCTAGCTTGTTTACACTATGTATTTGGAAAA
AGAATTCAGCAATGTCTTAACTTCTGGAAATTGGCACATAATGATCACCC
TGTTAGATTAGAAAAAAACAAATCTCCTAAACAATTATGGCACAACGCAA
GTATGTTGTACTCAAACAAAGAAAATACTGCCATGACGAATCTTTTTCGC
AGAGATCCCAGTGAATATGAACCTATTTTTGAACGATTTAGAAACATCTA
CACCTTACCAGAACCAGATTCAATTAAAATTGTATTGCCAAGATTTTCTC
TGCCTTTGTCTGATGAACAATTGGGAAGATTGAGCGCATCTATTAACGTT
TTACGAGAGAGTAATTATGATGGAATTGACATTTATGTTGAAGTTATGAA
ATTTGTGCACGAGAATGTAACAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046999-exon-scaffold_12-1575043694:4005..4351 | TCONS_00046999-exon-scaffold_12-1575043694:4005..4351 | Clytia hemisphaerica | exon |
| TCONS_00046999-exon-scaffold_12-1575043694:2837..3695 | TCONS_00046999-exon-scaffold_12-1575043694:2837..3695 | Clytia hemisphaerica | exon |
| TCONS_00046999-exon-scaffold_12-1510915933:4005..4351 | TCONS_00046999-exon-scaffold_12-1510915933:4005..4351 | Clytia hemisphaerica | exon |
| TCONS_00046999-exon-scaffold_12-1510915933:2837..3695 | TCONS_00046999-exon-scaffold_12-1510915933:2837..3695 | Clytia hemisphaerica | exon |
| TCONS_00046999-exon-scaffold_12-1491911889:4005..4351 | TCONS_00046999-exon-scaffold_12-1491911889:4005..4351 | Clytia hemisphaerica | exon |
| TCONS_00046999-exon-scaffold_12-1491911889:2837..3695 | TCONS_00046999-exon-scaffold_12-1491911889:2837..3695 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:2837..4351 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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