|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047036 ID=TCONS_00047036|Name=TCONS_00047036|organism=Clytia hemisphaerica|type=transcript|length=6683bpRun BLAST on NCBI transcript from alignment at scaffold_120:251178..316057- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047036 ID=TCONS_00047036|Name=TCONS_00047036|organism=Clytia hemisphaerica|type=transcript|length=64880bp|location=Sequence derived from alignment at scaffold_120:251178..316057- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047036 vs. Swiss-Prot (Human)
Match: NU205 (Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1 SV=3) HSP 1 Score: 602.438 bits (1552), Expect = 1.289e-178 Identity = 401/1249 (32.11%), Postives = 658/1249 (52.68%), Query Frame = 1
Query: 2380 LGAGSRIPGFHPYLTFLTENVFLTFKTRAYQDTCEKWRVGSQVLKILLKILKEYNPQPDHFTERFVEVQGINLGKASKPSGFQLMLCLLNDTPVFRMLLSVIDDVAQQLERFVINEELKSSLEEIAGYCMAILEQVLEKQPVFLELSKHHMSSMIVSPLDELLLSVNPRTGRPDYLCMIARYMTYANIQASISLSVVKIIKLACEGLRVQKEIVELLAQNAVQSKELLVGFAEHLEVPDPELHENVEEFTMDENEEQSNEKQDLVRQNIVQLLTNTLNQPSVNIAQFLLGFDTRQSLARTNLQDPGVRGFPKTCLHSIITILNRGVSATCGPDARLLTPKLSESLYRLMYQLCAHQEIGGAVRRYLRTNTDFYMKHIQALPFLPTDGTELDLDEIQYIRLANQQSWFLKTVAIDLRVVATSRMRSALQQLLGALYSEQAAPDLLQGGGDVTQRTLEATQMTVGDSLSRTMLGSAFRFGSDEKXXXXXXXXXXXFTQRYPPNIELQFFDYGAVEQIITSCEELDEMGTPLCDVRKLYKVLMGEINNSQLVVGASQKQEILKEVKGVLKHAVDRNLVRESFHSKRNAFDAWRQVVEITFAVCPADMIPVDKKQAILMEILNQLMPRITDEDALPELASAVAGTVLSLMANF---WFTCTQIDSMKNPNEISVISMETVCAIFP-----------------------GLVEGIIAVGSGQARTRANLYGAFLYYIQIGQ----------MYNSITKXXXXXXXIFGKQNKETWETKTMQTLYKYGDSFLDIVAKDMCQGTCIARMMAMSTMDAIASLDWKHKYLMLMTSRGYLRVLVDQLLEEDAELQSVLSLQPQSMKPLYLFESKMSFLAKVASTDYGAQTLLQFGLISRLTECQFLDFHVEKPTLLTNTNTMAYTHSEDPFLPSLLERYSKIFSSFARLILAFLSSVGIQHQVAISQIQNLVMNHEDLFNTILNDSGESHSMTSLKQLSLAIAIVS--LLP--ITDKRDDAWE-MLTEEQRAWRSFMNRIHRLMLSLLNKYSITACKKIMNQTLQAENLDSSMITSPSANQMSVTALETQNALLQIRSRVLTFCKNVISSQGLSGPYARVMFAPSFTDNVGQE-TRLITGKPVSKK-QLPNLSLIVGDLKSCPSQLSKCLDHLKVLDRKIDSLQDLPXXXXXXXXXXXXXXXXXPFH--QRQVVALRILRKLRELRQNEANLLSYIIEHSVYILWRHIDYYYLHCVPTD 5991
LGAG R PGF PYL FL ++VFL F+TRAY+ EKW V VL++ K+L++Y PQ + F ++FVE+QG + A KP GF LM LLN++P+ + LS++++ +QL+ + K LE+ +C+A+L L+K+ +F++L + ++IV PL++LL +NPRT + D + IARY+ + N ++ KI+ +Q ++V + S++L+ GF E L+ D E +EE + E E++ + R +I+ LL +L N+A +LLGF+ ++ ++ TNLQDPGV G P+TCLH+I+ IL +G GP A +P+L+E Y+++YQLCA + G RYLRT+ DF +Q LPF E + I + NQ SW +KT +I+LRV + +R RS Q+LL L + G G + + D+ ++ + IL++L S+ F+Q P ++L FFD +EQ+I +CE + G +C+V+ L++VL+ E+N Q + Q+ +++E+ VL++ V RN + + H+KR+A ++WRQ+VEI CP D+I + +Q I+ +IL + +I D++A EL VAG V +L A+ T + S+ P E M C P L++ I+ G G R R +LYG+ LYY+QI Q ++ + +F K +E + + YG + +++V +D C G I RM+A++ +D I S+D + ++L+ +++ GYL+VLVD L+E+D LQS+L+ QP +K LY +ESKM+FL +VA GA LL+ G+I RL +CQ D E T+ +M F+P+ ++RY +I +L L+S QH A Q+ +++H D IL + S SL++L+L I+S LP +++ D E L E Q + R R L LL+++ ++ Q +N++ ++ E + A+ QI + V+ +C++++ + +A +F PS ++ V ++ R T PV +LP L +I+ LK + D + K+ +++ LP +E++E+ + Q+ V+A R L K+ R +L S+IIE ++ILWRH++YY LHC+PTD
Sbjct: 723 LGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEI-IAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPG-KKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSISQKLMAGFVECLDCEDAEEFVRLEEGS--ELEKKLVAIRHETRIHILNLLITSLECNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVRESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQYLPF---SNKEYE------ISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGIEDENRSVSGFLHFDTATKV------------RRKILNILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTVCNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQDVHDKILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQKETSVLGPAEAHYAFMLDSCFTSPPPEENPLVGFASIGDSSLYIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDVFSKLQRE-----NIAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKIQQGALELLRSGVIVRLAQCQVYDMRPE-----TDPQSMFGMRDPPMFIPTPVDRYRQILLPALQLCQVILTSSMAQHLQAAGQVLQFLISHSDTIQAILR--CQDVSAGSLQELALLTGIISKAALPGILSELDVDVNEGSLMELQ----GHIGRFQRQCLGLLSRFG--GSDRLRQFKFQDDNVEGDKVSKKD---------EIELAMQQICANVMEYCQSLMLQSSPTFQHAVCLFTPSLSETVNRDGPRQDTQAPVVPYWRLPGLGIIIYLLKQSANDFFSYYDSHRQSVSKLQNVEQLPPDEIKELCQSVMPAGVDKISTAQKYVLARRRLVKVINNRAKLLSLCSFIIETCLFILWRHLEYYLLHCMPTD 1919 HSP 2 Score: 555.444 bits (1430), Expect = 1.377e-162 Identity = 311/784 (39.67%), Postives = 454/784 (57.91%), Query Frame = 2
Query: 80 GGMWIPFKDILSIIETAIVHRKSEVYAELDEILTKHRAVFVNLLKNPGKNTAQREQVKKSSTVGLKLNEESNSITLKESTIHDVLLLSNALNLNEFSCVELILAAELQSPNFPGISDPAICALLYHDGRRSILAALKLLLTARPGVTWTLELDDRILELVTKFTENVISNGIVSVILNLMKDLSLPEELKKLEDAHALSDGKHKNMITELITEQQLLLGDCLFATACQHPLDKSDCEKLFNHLKLIAPNTADGSLDAVTMRVLFSLLANFNCDILDLAVENIEDTQYQQLPYFKDKNYFTSMHKTLLRPDDNLWQTSGIKEAIKFCWSIFLRTCSTHPDLSXXXXXXXXXXXXMSSVVANGVFHFLRKSVLESSKFYSEEYFVKIMHSFITSLIVKFPMKIKDWRNSGDENARIVEAHLFEGMEPPRGLSHDFKDFMDLISSLYKRDTHGLHLNCEYWIPPEPLG-----GAFSPHPVRKQQQALDQKKLMLNKFVRLAGDILMQTLYVSYLNMLASLSNNEQAATYCFRLLSRN--------ERTGNLSLSWDHFFNSLKQYYMSLRSTPDAPDHRLHMHRH---QEIXXXXXXXXXXXXXXIKCVAENNESVRIAFCENQSWLPVASLLGLVCCSIPPSLKGLLLETLAAFAKSPEVAVSLWHSLEAAQVLQTIETNGPKS--GIAVELLEIESRNEAYPQTLGFTKLVDILTDIAVPATLGAGSRIPGFHPYLTFLTENVFLTFKTRAYQDTREKWRVGSQVLKILLKILKEYNPQPDHFT 2377
+W P+KDI + A+ R+ E LD+IL KH+ F++L KNP KN Q E+V+K+ST G+ + + + L E I + +LS+ ++ E + VEL+LA E Q P+FPG++ + LLY DG+R I +LK L+ +R G TWTLEL + + T+FT+ ++ G+ +L L+ + + E +KL+ L KH+ +++LI E + L + LFA ACQ PL K D L HL+ + A+GSLDAV + +L +LL F+ ++ + E +D QLP +K Y ++H L D LW+ G++ ++ W++ LR S PD++ E E DE + +A+ VF FL +SV+ S FY EE++++ +H+ IT + PMK+K RN DE+AR++ + G EPP L D + M LI LYK++ L L EYW P EPL G++ + Q Q++++L+KFVR GD+L T+Y+ YL ML L+N Q A YCF LL N + G +SW+HFF+SL Y+ LR D P +RH + I+ +E +GL + L L + +E+ R+A CE+ W PV +LGL+ CSIPP LK LL+TLAAF KSPE+A SLW SLE Q+LQT+ + GI VEL EIESR E YP T F +L+ L + + P+ LGAG R PGF PYL FL ++VFL F+TRAY+ EKW V VL++ K+L++Y PQ + F
Sbjct: 11 ASLWGPYKDIWHKVGNALWRRQPEAVHLLDKILKKHKPDFISLFKNPPKNVQQHEKVQKASTEGVAIQGQQGTRLLPEQLIKEAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKALIQSRRGKTWTLELSPELASMTTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEVSDLIKECRQSLAESLFAWACQSPLGKEDTLLLIGHLERVTVE-ANGSLDAVNLALLMALLYCFDISFIEQSTEERDDM-IHQLPLLTEKQYIATIHSRL--QDSQLWKLPGLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELAIADNVFLFLMESVVVSEYFYQEEFYIRRVHNLITDFLALMPMKVKQLRNRADEDARMIHMSMQMGNEPPISLRRDLEHLMLLIGELYKKNPFHLELALEYWCPTEPLQTPTIMGSY----LGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRK--DLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRIPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFV 784 The following BLAST results are available for this feature:
BLAST of TCONS_00047036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.