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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047093 ID=TCONS_00047093|Name=TCONS_00047093|organism=Clytia hemisphaerica|type=transcript|length=840bp
AAAAGAAAGACAATTTACTCGTTACGCCAATATCATACCAACCAACAAAA
CTTTGGTCAATTGGTGATTTTATCAAGAGACAACATCAAATGTCTAAAAG
AAGACtttgaaaagattttggaaGAAGCAAATCACAAacaagaaaagaag
aagaagaagaaagaatcaGCAACATCATCAACATCATCGACTGCTGGTAT
GCAAGCCCCACCAGAAACTACAATCAAGAAAGATGAAATCAGATCAGGAA
AAGAACAATTGAAATACAAAGATGACATGATTCTGATGTTTTTGGAACAA
ATGAATAATAAAGTTTTTGACGTGAAAAAAGAAATGTGTGAGGGATGTTT
GGAAGATTACCCAAGCCAACGAGATCACTATTGTCTGATGANTGACATGA
TTCTGATGTTTTTGGAACAAATGAATAATAAAGTTTTTGACGTGAAAAAA
GAAATGTGTGAGGGATGTTTGGAAGATTACCCAAGCCAACGAGATCACTA
TTGTCTGATGACAGAAGCAAAAGAATTTTTAGAGGATGCATTCTCGAACC
TCATCAAAGTGGTTGACGAAGAAGAAGCAAATCGTAGGTGTCGTTTGAAA
AACCATCCAGACGATAAAATATATATGAGcaaaaaagaacttttaaatGA
TGAACACTGGgtaaatgaattgaaaaagaagattttacaATCAAAAATTT
TAAAATAGAATTTATCACGATGTATCTCTTTGTATTAAGAAAGAAAAATT
ATTCATTTGAAATGCTTAATGattgtttgttatattttttgttcggtTGT
ATTATTATACGCATGAGTGAATaagctgaaaaagaaaaat Run BLAST on NCBI protein sequence of TCONS_00047093-protein >TCONS_00047093-protein ID=TCONS_00047093-protein|Name=TCONS_00047093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
KRKTIYSLRQYHTNQQNFGQLVILSRDNIKCLKEDFEKILEEANHKQEKK
KKKKESATSSTSSTAGMQAPPETTIKKDEIRSGKEQLKYKDDMILMFLEQ
MNNKVFDVKKEMCEGCLEDYPSQRDHYCLMXDMILMFLEQMNNKVFDVKK
EMCEGCLEDYPSQRDHYCLMTEAKEFLEDAFSNLIKVVDEEEANRRCRLK
NHPDDKIYMSKKELLNDEHWVNELKKKILQSKILK Run BLAST on NCBI transcript from alignment at scaffold_120:400729..401568 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047093 ID=TCONS_00047093|Name=TCONS_00047093|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at scaffold_120:400729..401568 (Clytia hemisphaerica)
atttttctttttcagcttATTCACTCATGCGTATAATAATACAaccgaac
aaaaaatataacaaacaatCATTAAGCATTTCAAATGAATAATTTTTCTT
TCTTAATACAAAGAGATACATCGTGATAAATTCTATTTTAAAATTTTTGA
TtgtaaaatcttctttttcaattcatttacCCAGTGTTCATCatttaaaa
gttcttttttgCTCATATATATTTTATCGTCTGGATGGTTTTTCAAACGA
CACCTACGATTTGCTTCTTCTTCGTCAACCACTTTGATGAGGTTCGAGAA
TGCATCCTCTAAAAATTCTTTTGCTTCTGTCATCAGACAATAGTGATCTC
GTTGGCTTGGGTAATCTTCCAAACATCCCTCACACATTTCTTTTTTCACG
TCAAAAACTTTATTATTCATTTGTTCCAAAAACATCAGAATCATGTCANT
CATCAGACAATAGTGATCTCGTTGGCTTGGGTAATCTTCCAAACATCCCT
CACACATTTCTTTTTTCACGTCAAAAACTTTATTATTCATTTGTTCCAAA
AACATCAGAATCATGTCATCTTTGTATTTCAATTGTTCTTTTCCTGATCT
GATTTCATCTTTCTTGATTGTAGTTTCTGGTGGGGCTTGCATACCAGCAG
TCGATGATGTTGATGATGTTGCtgattctttcttcttcttcttcttttct
tgtTTGTGATTTGCTTCttccaaaatcttttcaaaGTCTTCTTTTAGACA
TTTGATGTTGTCTCTTGATAAAATCACCAATTGACCAAAGTTTTGTTGGT
TGGTATGATATTGGCGTAACGAGTAAATTGTCTTTCTTTT Coding sequence (CDS) from alignment at scaffold_120:400729..401568 >TCONS_00047093 ID=TCONS_00047093|Name=TCONS_00047093|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_120:400729..401568 (Clytia hemisphaerica)
CTATTTTAAAATTTTTGATtgtaaaatcttctttttcaattcatttacCC
AGTGTTCATCatttaaaagttcttttttgCTCATATATATTTTATCGTCT
GGATGGTTTTTCAAACGACACCTACGATTTGCTTCTTCTTCGTCAACCAC
TTTGATGAGGTTCGAGAATGCATCCTCTAAAAATTCTTTTGCTTCTGTCA
TCAGACAATAGTGATCTCGTTGGCTTGGGTAATCTTCCAAACATCCCTCA
CACATTTCTTTTTTCACGTCAAAAACTTTATTATTCATTTGTTCCAAAAA
CATCAGAATCATGTCANTCATCAGACAATAGTGATCTCGTTGGCTTGGGT
AATCTTCCAAACATCCCTCACACATTTCTTTTTTCACGTCAAAAACTTTA
TTATTCATTTGTTCCAAAAACATCAGAATCATGTCATCTTTGTATTTCAA
TTGTTCTTTTCCTGATCTGATTTCATCTTTCTTGATTGTAGTTTCTGGTG
GGGCTTGCATACCAGCAGTCGATGATGTTGATGATGTTGCtgattctttc
ttcttcttcttcttttcttgtTTGTGATTTGCTTCttccaaaatcttttc
aaaGTCTTCTTTTAGACATTTGATGTTGTCTCTTGATAAAATCACCAATT
GACCAAAGTTTTGTTGGTTGGTATGATATTGGCGTAACGAGTAAATTGTC
TTTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047093-exon-scaffold_120-1491911889:400729..401568 | TCONS_00047093-exon-scaffold_120-1491911889:400729..401568 | Clytia hemisphaerica | exon |
| TCONS_00047093-exon-scaffold_120-1510915933:400729..401568 | TCONS_00047093-exon-scaffold_120-1510915933:400729..401568 | Clytia hemisphaerica | exon |
| TCONS_00047093-exon-scaffold_120-1575043694:400729..401568 | TCONS_00047093-exon-scaffold_120-1575043694:400729..401568 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:400729..401568 . |
Blast
The following BLAST results are available for this feature:
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