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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047129 ID=TCONS_00047129|Name=TCONS_00047129|organism=Clytia hemisphaerica|type=transcript|length=1307bpRun BLAST on NCBI transcript from alignment at scaffold_122:66999..80777- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047129 ID=TCONS_00047129|Name=TCONS_00047129|organism=Clytia hemisphaerica|type=transcript|length=13779bp|location=Sequence derived from alignment at scaffold_122:66999..80777- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047129 vs. Swiss-Prot (Human)
Match: BARD1 (BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.084e-29 Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = 3
Query: 771 KKNMKGETPLHVACIKGDSDRVKELLELGAKPNTKDFAGWTPLHEACNHGFTEVVELLLQHGAYVDDVAGDDMETPLHDAVSNNHIDVVKCLLKTTNAPIGTRNGQGLLPKDCCTTDEMRKLF 1139
K+N +GET LH+A IKGD V+ LL+ G+ PN KD AGWTPLHEACNHG +VVELLLQH A V + G ++PLHDA N H+D+VK LL + A N GL P D + M+ L
Sbjct: 423 KRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRNAVNIFGLRPVDYTDDESMKSLL 543 The following BLAST results are available for this feature:
BLAST of TCONS_00047129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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