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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047144 ID=TCONS_00047144|Name=TCONS_00047144|organism=Clytia hemisphaerica|type=transcript|length=3388bpRun BLAST on NCBI protein sequence of TCONS_00047144-protein >TCONS_00047144-protein ID=TCONS_00047144-protein|Name=TCONS_00047144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp MRQLITNIGSSDYLALATTAILLLIFTLVYLWWNERNQGKLSIPGLSSKHRun BLAST on NCBI transcript from alignment at scaffold_122:173561..201239- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047144 ID=TCONS_00047144|Name=TCONS_00047144|organism=Clytia hemisphaerica|type=transcript|length=27679bp|location=Sequence derived from alignment at scaffold_122:173561..201239- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_122:173561..201239- >TCONS_00047144 ID=TCONS_00047144|Name=TCONS_00047144|organism=Clytia hemisphaerica|type=CDS|length=17388bp|location=Sequence derived from alignment at scaffold_122:173561..201239- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047144 vs. Swiss-Prot (Human)
Match: CP20A (Cytochrome P450 20A1 OS=Homo sapiens GN=CYP20A1 PE=1 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 1.662e-65 Identity = 145/457 (31.73%), Postives = 239/457 (52.30%), Query Frame = 1
Query: 226 VYLWWNERNQGKLSIPGLSSKHEIYGNLKQITKDGGLHQFLLDHHKKFGPMFSFYWGKELVVSLASPYAWKDTQTLFDRPANQFELFKPLVGVYSIQYMNTPVGQKH-RKILDRHFSFTAIGLYFQTFTTIANELVTRWSKVPKDEMVPLRQHMLAVAIKSIIRTSFGEDYFKSNKEILELEAAYDVCWEEMERR-LDGNMPEPDSDRQKNYDDSLNWLSKKVSQIVNHRKANKEKKDNNALDIMIDA-EDLYTSDQQIFDMVISYIVGGFHTTGNLLTWAVYYLCNDSKVVDKMLTEINEVLGDGEITMDNFDKLIYARQVVDETMRCSVLAPYAARYSEYDMVIGGHVIPKHTPLLQALGCVLQDETIWPQPKRFDPDRFGPDAPKRHPLAFQPFGFAGKRKCPGYRFAYYEAIIFLVAIVRNFKVSLVPDMKVEAVHRLVTSPKEEIYINIEKR 1587
+YL+ R IPG++ E GNL I G LH+FL++ H+++GP+ SF++G+ LVVSL + K ++ ++ FE L + Q V + H RK L + ++ F ++ EL+ +W P+ + VPL QHML A+KS+ + G F+ ++E++ + + W E+ + LDG++ + + R+K Y+D+L L + I+ RK N + I ID+ +DQQI + + + + T L TWA+ +L +V K+ EIN+V G+G +T + ++L Y + V+ ET+R + L P +A+ + + I +IP+ T +L ALG VLQD WP P +FDPDRF + + F GF+G ++CP RFAY + L +V+ + V +E + LVTS +EE +I + KR
Sbjct: 20 LYLYPASRQAA--GIPGITPTEEKDGNLPDIVNSGSLHEFLVNLHERYGPVVSFWFGRRLVVSLGTVDVLKQ-HINPNKTSDPFETM--LKSLLRYQSGGGSVSENHMRKKLYENGVTDSLKSNFALLLKLSEELLDKWLSYPETQHVPLSQHMLGFAMKSVTQMVMGST-FEDDQEVIRFQKNHGTVWSEIGKGFLDGSL-DKNMTRKKQYEDALMQLESVLRNIIKERKGR-----NFSQHIFIDSLVQGNLNDQQILEDSMIFSLASCIITAKLCTWAICFLTTSEEVQKKLYEEINQVFGNGPVTPEKIEQLRYCQHVLCETVRTAKLTPVSAQLQDIEGKIDRFIIPRETLVLYALGVVLQDPNTWPSPHKFDPDRFDDELVMK---TFSSLGFSGTQECPELRFAYMVTTVLLSVLVKRLHLLSVEGQVIETKYELVTSSREEAWITVSKR 461 The following BLAST results are available for this feature:
BLAST of TCONS_00047144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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