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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047150 ID=TCONS_00047150|Name=TCONS_00047150|organism=Clytia hemisphaerica|type=transcript|length=1747bp
CACATGAATAAAATCTGAAACATCAAAACTGAGAAGAAATAAGAAAGCTC
AGCTTACTGAAATTGGGTGGGTCTTTATCTGCTGCTGTACATCAAAAAAT
ATGAAGTAGGTACTCGTACAGTCGTACTGTAAGGTGCGGTAAGGTTGGTG
CGTCGTGCCGTGCTGTACCCGCTCTGTCTATTTGTCTACTCCtcttcact
ttcgttttcaagaaaTTCGGAAGTTATTTTCTTTTCCATGGTTGAACTAT
GACTATGACTTTCTTCCGTAGAATTGTTGTAGAATGAATGACCACGACTA
AcccgattttctgaaaatcttCCGAAAATATGCCGTTTCGGgttgtttta
aaaatgaaactaaAGCTCATTTCGCGGGAAGAATCGACGTTGTGCGAACG
CTTTTAATGGCGATTTAATGTTTGGACCTCTACTCTTTGCTGGAGTGGAA
ATTATCTTTGAATATCTTAACCTTGGGTTATATTCACCATGAAACTAGTA
AAGTAAGATGGATTTCAAGTTTTATTCTTTAtatttcttcaaatattttt
aaacaaaccTTCTTCGTTTCACATTCAAACGATTACTAAACATTTTGATT
CATCATATATATCAATGtactaccgtgagattgggtaacttgcatcagtg
gaggctaacatgcatagccctcaaatgaatgacctggctggtcattaaaa
tacaactatgcAGCTCCGCTCGCAGCTCTACTCTATCATTTTTGTTTTGA
TTTAACTTTGTATTTTAATGACCAGCCAGGTCATTTATTTGAGGGCTATT
CAGACGATCTCAATCAAACGGAATCAACAATCGAACCAGtagaaccaaat
cgaacgcaatcgaccgattgaaattcaattgtcgaacgcaatcgaatttc
aatatCGAATATTATCGCAATtctcagattcgattgatattcgattgcgt
tcgattgatgttcaattgtgttcgattgtcgattcattgacccccggatt
gttcgtcgcataatttctacgggaaatcgaaaataatttcattcggcttg
tgatgtttgagagcttggatgttggaaagctgcaagaataaagccagacg
atctcaatagAACGGATGGTCGAtggtcgaacaacaatcgaaccaatcga
atattacccagaattttgatgttcgattgagattcgattgcgtttgattt
ggttcgactggttcgatcgttgattgcgttcgatttggttcgaatggttc
gatcgttgattccgttAGATTGAGATCGTCttgggctatgcatgttagcc
tccacgcAAGTTACCTCACGGTAgttagacaggcagctgacgacATTTAA
AATCTGGATGACTTTTGGACAAACACTGAGttggtttttcttgttcccat
gTATCTGATGATACTAAAAATTTTACTAGGCgtccaaaaatttatttaac
ggaCACATTCAGTAGTGATTtagtaaaaatttagatttcaaaagttatga
tgaCTTAAATTTGACATGTGATTTTCTTCAATCAGGAACCTTTAACCCcc
tgaaaatgtcaaatttcaacgtcATCAAAACGAAAAACAATTTATACCAT
TTGAAAGCTCGTCTTAAACTATACAGAAGACATTTAAACGGGTATATTCG
ATTTCTcaacctaactcgagaaaattgagatcgtaattccttttaaaata
aggcactttttcaaaaatgacgtcatagaagAGCCATAGACCTTCAT Run BLAST on NCBI transcript from alignment at scaffold_122:11538..13284 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047150 ID=TCONS_00047150|Name=TCONS_00047150|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at scaffold_122:11538..13284 (Clytia hemisphaerica)
ATGAAGGTCTATGGCTcttctatgacgtcatttttgaaaaagtgccttat
tttaaaaggaattacgatctcaattttctcgagttaggttgAGAAATCGA
ATATACCCGTTTAAATGTCTTCTGTATAGTTTAAGACGAGCTTTCAAATG
GTATAAATTGTTTTTCGTTTTGATgacgttgaaatttgacattttcaggG
GGTTAAAGGTTCCTGATTGAAGAAAATCACATGTCAAATTTAAGtcatca
taacttttgaaatctaaatttttactaAATCACTACTGAATGTGtccgtt
aaataaatttttggacGCCTAGTAAAATTTTTAGTATCATCAGATAcatg
ggaacaagaaaaaccaaCTCAGTGTTTGTCCAAAAGTCATCCAGATTTTA
AATgtcgtcagctgcctgtctaacTACCGTGAGGTAACTTgcgtggaggc
taacatgcatagcccaaGACGATCTCAATCTaacggaatcaacgatcgaa
ccattcgaaccaaatcgaacgcaatcaacgatcgaaccagtcgaaccaaa
tcaaacgcaatcgaatctcaatcgaacatcaaaattctgggtaatattcg
attggttcgattgttgttcgaccaTCGACCATCCGTTctattgagatcgt
ctggctttattcttgcagctttccaacatccaagctctcaaacatcacaa
gccgaatgaaattattttcgatttcccgtagaaattatgcgacgaacaat
ccgggggtcaatgaatcgacaatcgaacacaattgaacatcaatcgaacg
caatcgaatatcaatcgaatctgagaATTGCGATAATATTCGatattgaa
attcgattgcgttcgacaattgaatttcaatcggtcgattgcgttcgatt
tggttctaCTGGTTCGATTGTTGATTCCGTTTGATTGAGATCGTCTGAAT
AGCCCTCAAATAAATGACCTGGCTGGTCATTAAAATACAAAGTTAAATCA
AAACAAAAATGATAGAGTAGAGCTGCGAGCGGAGCTgcatagttgtattt
taatgaccagccaggtcattcatttgagggctatgcatgttagcctccac
tgatgcaagttacccaatctcacggtagtaCATTGATATATATGATGAAT
CAAAATGTTTAGTAATCGTTTGAATGTGAAACGAAGAAggtttgtttaaa
aatatttgaagaaataTAAAGAATAAAACTTGAAATCCATCTTACTTTAC
TAGTTTCATGGTGAATATAACCCAAGGTTAAGATATTCAAAGATAATTTC
CACTCCAGCAAAGAGTAGAGGTCCAAACATTAAATCGCCATTAAAAGCGT
TCGCACAACGTCGATTCTTCCCGCGAAATGAGCTttagtttcatttttaa
aacaacCCGAAACGGCATATTTTCGGaagattttcagaaaatcgggTTAG
TCGTGGTCATTCATTCTACAACAATTCTACGGAAGAAAGTCATAGTCATA
GTTCAACCATGGAAAAGAAAATAACTTCCGAAtttcttgaaaacgaaagt
gaagaGGAGTAGACAAATAGACAGAGCGGGTACAGCACGGCACGACGCAC
CAACCTTACCGCACCTTACAGTACGACTGTACGAGTACCTACTTCATATT
TTTTGATGTACAGCAGCAGATAAAGACCCACCCAATTTCAGTAAGCTGAG
CTTTCTTATTTCTTCTCAGTTTTGATGTTTCAGATTTTATTCATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047150-exon-scaffold_122-1491911889:11538..13284 | TCONS_00047150-exon-scaffold_122-1491911889:11538..13284 | Clytia hemisphaerica | exon |
| TCONS_00047150-exon-scaffold_122-1510915933:11538..13284 | TCONS_00047150-exon-scaffold_122-1510915933:11538..13284 | Clytia hemisphaerica | exon |
| TCONS_00047150-exon-scaffold_122-1575043694:11538..13284 | TCONS_00047150-exon-scaffold_122-1575043694:11538..13284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_122 | supercontig | scaffold_122:11538..13284 . |
Blast
The following BLAST results are available for this feature:
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