TCONS_00047152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047152
Unique NameTCONS_00047152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047152 ID=TCONS_00047152|Name=TCONS_00047152|organism=Clytia hemisphaerica|type=transcript|length=478bp
GTTAACTTTATGGAAAGCACTAGCCATCCCTCATTTGGACTACTGCTCTC
AACTCTGGTCTCCCTGGAAGCGTGGTCTTGTCCAGCAACTGGAAGAAGTT
CAGAAAtcatttttacattgaattccATCCCTCAGACATCTCAACTATTG
ggaaaaactcaaatcattaaaaCTGTATAGCCTTGAAAGACGGAGAGAGC
GGTATCAAATAATTTATACCTGCAACGTCATTGAAGGCAACGTCCCGAAT
TTTGATTATGACGAAAGTAAAGGAGGCATTTCCTGCCATATAAATCAGAG
ATTGGGGAGAATTTGCGAtctaaaagctgtcaatatcaaACGCAAAAATA
TCTGGAGGGGAAGTCTTTCCCAAGAAGGCCCTCGATTATTCAACACCCTT
CCCAGACCAATAAGAGATTTGACAAACTGCCCCAAAGAAACATGAAGACC
ATGAAAAGGCGAATATACTTCAGCGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_122:34121..34598

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047152 ID=TCONS_00047152|Name=TCONS_00047152|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at scaffold_122:34121..34598 (Clytia hemisphaerica)
TGACGCTGAAGTATATTCGCCTTTTCATGGTCTTCATGTTTCTTTGGGGC AGTTTGTCAAATCTCTTATTGGTCTGGGAAGGGTGTTGAATAATCGAGGG CCTTCTTGGGAAAGACTTCCCCTCCAGATATTTTTGCGTttgatattgac agcttttagaTCGCAAATTCTCCCCAATCTCTGATTTATATGGCAGGAAA TGCCTCCTTTACTTTCGTCATAATCAAAATTCGGGACGTTGCCTTCAATG ACGTTGCAGGTATAAATTATTTGATACCGCTCTCTCCGTCTTTCAAGGCT ATACAGttttaatgatttgagtttttccCAATAGTTGAGATGTCTGAGGG ATggaattcaatgtaaaaatgaTTTCTGAACTTCTTCCAGTTGCTGGACA AGACCACGCTTCCAGGGAGACCAGAGTTGAGAGCAGTAGTCCAAATGAGG GATGGCTAGTGCTTTCCATAAAGTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030059XLOC_030059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047152-exon-scaffold_122-1491911889:34121..34598TCONS_00047152-exon-scaffold_122-1491911889:34121..34598Clytia hemisphaericaexon
TCONS_00047152-exon-scaffold_122-1510915933:34121..34598TCONS_00047152-exon-scaffold_122-1510915933:34121..34598Clytia hemisphaericaexon
TCONS_00047152-exon-scaffold_122-1575043694:34121..34598TCONS_00047152-exon-scaffold_122-1575043694:34121..34598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_122supercontigscaffold_122:34121..34598 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.862168 0 0 4.14081 3.33929 6.46615 6.51474 5.91179 3.82587 4.17603 3.59116 1.56678 2.05541 0.893163 1.53295 1.96733 1.42033 1.94756 2.17049 1.09438 1.47461 0.296087 0.146761 3.68536 2.40152 1.76589 1.68434 0 1.12406
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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