TCONS_00047156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047156
Unique NameTCONS_00047156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047156 ID=TCONS_00047156|Name=TCONS_00047156|organism=Clytia hemisphaerica|type=transcript|length=347bp
GATCTTATTCTGCTTAGTTATACGCCTCGTTTGAGCCTAAAATGAGCTTC
TggaaatgatttgtaacgttgcaagaattttgacctccacAAACCCGCCT
TATTCCCCTGGAGAGGTTTTTGACCGAAAGTACACTCGTTTTTTGTAATA
AGGAGTAAATATTTGTGGAGGCTTTACTGCTCTTATTTTTTCAGCAACTT
GAAACTCGAATTGTTTTGCATATCTATACTTTACATGGCGTTCTAAGATA
CGCTTTTCTACTATAATAGCATATTAATTGAACGTTTCTTGAATTTTTac
caagattttattaaaatatgataaaaaaaattttatttagaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_122:172771..173117

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047156 ID=TCONS_00047156|Name=TCONS_00047156|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_122:172771..173117 (Clytia hemisphaerica)
tttttttctaaataaaattttttttatcatattttaataaaatcttggtA
AAAATTCAAGAAACGTTCAATTAATATGCTATTATAGTAGAAAAGCGTAT
CTTAGAACGCCATGTAAAGTATAGATATGCAAAACAATTCGAGTTTCAAG
TTGCTGAAAAAATAAGAGCAGTAAAGCCTCCACAAATATTTACTCCTTAT
TACAAAAAACGAGTGTACTTTCGGTCAAAAACCTCTCCAGGGGAATAAGG
CGGGTTTgtggaggtcaaaattcttgcaacgttacaaatcatttccAGAA
GCTCATTTTAGGCTCAAACGAGGCGTATAACTAAGCAGAATAAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030063XLOC_030063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047156-exon-scaffold_122-1491911889:172771..173117TCONS_00047156-exon-scaffold_122-1491911889:172771..173117Clytia hemisphaericaexon
TCONS_00047156-exon-scaffold_122-1510915933:172771..173117TCONS_00047156-exon-scaffold_122-1510915933:172771..173117Clytia hemisphaericaexon
TCONS_00047156-exon-scaffold_122-1575043694:172771..173117TCONS_00047156-exon-scaffold_122-1575043694:172771..173117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_122supercontigscaffold_122:172771..173117 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257084	0.752094	1.45542	0.854341	0.346693	0.821884	3.30523	1.85659	1.51648	2.95178	0.520922	1.36973	1.53881	2.66345	3.79551	2.66322	1.35095	2.37373	0.546573	4.00364	0.994255	1.45489	1.76861	1.07195	0	0.985366	1.41006	1.12864	3.13878	1.74432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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