TCONS_00047159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047159
Unique NameTCONS_00047159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047159 ID=TCONS_00047159|Name=TCONS_00047159|organism=Clytia hemisphaerica|type=transcript|length=322bp
taaaCAGAGGAACAAAAAAGCTATTACTGCGAAACTAGTGATGATGATCT
GGACTTTCTTCGTTTTTGCCATCGTCATGTTGATGTCCAAATGCAGCGGA
CTTGGATTAAGTTACAACTACTACGACGAAACGGCACAAACTTATTGCGC
AAGTCGATTATCGCAACCTGGCTTTGTGTTTGCTATCCGAAGAGATTGCG
AAGGAACAGCACCCACCTGCAACGCCTTGTGTCAGCAAGTAAAAGCAGCT
GCACTCAAAACTATCGATAACCAACGAAAAAACTTTGGATGTTTTGATGC
TATCCATATCCGTAAAGAACAC
Run BLAST on NCBI

protein sequence of TCONS_00047159-protein

>TCONS_00047159-protein ID=TCONS_00047159-protein|Name=TCONS_00047159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KQRNKKAITAKLVMMIWTFFVFAIVMLMSKCSGLGLSYNYYDETAQTYCA
SRLSQPGFVFAIRRDCEGTAPTCNALCQQVKAAALKTIDNQRKNFGCFDA
IHIRKEH
Run BLAST on NCBI

transcript from alignment at scaffold_123:37395..38200+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047159 ID=TCONS_00047159|Name=TCONS_00047159|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at scaffold_123:37395..38200+ (Clytia hemisphaerica)
taaaCAGAGGAACAAAAAAGCTATTACTGCGAAACTAGTGATGATGATCT
GGACTTTCTTCGTTTTTGCCATCGTCATGTTGATGTCCAAATGCAGCGGA
CTTGGATTAAGTTACAACTACTACGACGAAACGGCACAAACTTATTGCGC
AAGTCGATTATCGCAACCTGGCTTTGTGTTTGCTATCCGAAGAGATTGCG
AAGGAACAGCACCCACCTGCAACGCCTTGTGTCAGCAAGTAAAAGCAGCT
GCACTCAAAACTATCGATAACCAACGAAAAAAGTATGATAACCTATTTGA
TTCTTTTCAATTACCTCCTTAGACAAAGCTACTGCTTTTAACCAGAAAAT
CGACCAAAAGAACAGTCCATTCATTTTGGAGCAATAAACTCTGACCACGC
TATCTTTTATAAAACACTAGGTAGAACCATAATCAATAGAACAAATAATA
ACAAAgatattcaattgacattgatAGAACTTCTTATCCTCTTCACAGCA
ATAGAAGAAAAATAATGTGCCATAATGCTGAAAGTAGACTGCAGTTAACT
AACGAACATTTTGTGAGATGAAAATAAATGATAAGCATGGCGGGAAGCGC
AGTGATAAGACAAATTGCTGGGATTGAAATGGTCTAAAGTAGTCTACTTT
TTGTAAAGATGGCACATTATTTGCTTCGCCTGCTGTGGCTTGAAAAAAGA
AAGAGGAAGTTCTATGGGTAGTCTGTGGATACTCTATGCGTTGTATAAAT
TGTGCCTTTATTGCAGCTTTGGATGTTTTGATGCTATCCATATCCGTAAA
GAACAC

Coding sequence (CDS) from alignment at scaffold_123:37395..38200+

>TCONS_00047159 ID=TCONS_00047159|Name=TCONS_00047159|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_123:37395..38200+ (Clytia hemisphaerica)
aaaCAGAGGAACAAAAAAGCTATTACTGCGAAACTAGTGATGATGATCTG
GACTTTCTTCGTTTTTGCCATCGTCATGTTGATGTCCAAATGCAGCGGAC
TTGGATTAAGTTACAACTACTACGACGAAACGGCACAAACTTATTGCGCA
AGTCGATTATCGCAACCTGGCTTTGTGTTTGCTATCCGAAGAGATTGCGA
AGGAACAGCACCCACCTGCAACGCCTTGTGTCAGCAAGTAAAAGCAGCTG
CACTCAAAACTATCGATAACCAACGAAAAAACTTTGGATGTTTTGATGCT
ATCCATATCCGTAAAGAACACaaaCAGAGGAACAAAAAAGCTATTACTGC
GAAACTAGTGATGATGATCTGGACTTTCTTCGTTTTTGCCATCGTCATGT
TGATGTCCAAATGCAGCGGACTTGGATTAAGTTACAACTACTACGACGAA
ACGGCACAAACTTATTGCGCAAGTCGATTATCGCAACCTGGCTTTGTGTT
TGCTATCCGAAGAGATTGCGAAGGAACAGCACCCACCTGCAACGCCTTGT
GTCAGCAAGTAAAAGCAGCTGCACTCAAAACTATCGATAACCAACGAAAA
AACTTTGGATGTTTTGATGCTATCCATATCCGTAAAGAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030065XLOC_030065Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047159-proteinTCONS_00047159-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047159-exon-scaffold_123-1491911889:37395..37676TCONS_00047159-exon-scaffold_123-1491911889:37395..37676Clytia hemisphaericaexon
TCONS_00047159-exon-scaffold_123-1510915933:37395..37676TCONS_00047159-exon-scaffold_123-1510915933:37395..37676Clytia hemisphaericaexon
TCONS_00047159-exon-scaffold_123-1575043694:37395..37676TCONS_00047159-exon-scaffold_123-1575043694:37395..37676Clytia hemisphaericaexon
TCONS_00047159-exon-scaffold_123-1491911889:38161..38200TCONS_00047159-exon-scaffold_123-1491911889:38161..38200Clytia hemisphaericaexon
TCONS_00047159-exon-scaffold_123-1510915933:38161..38200TCONS_00047159-exon-scaffold_123-1510915933:38161..38200Clytia hemisphaericaexon
TCONS_00047159-exon-scaffold_123-1575043694:38161..38200TCONS_00047159-exon-scaffold_123-1575043694:38161..38200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:37395..38200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.306134	0	0	0	0	0	0	38.9976	35.2519	145.292	32.4286	7.22481	13.7547	20.6182	35.3069	3.52335	5.31415	19.3165	18.8151	0.910585	0.444151	24.3347	12.6682	0	0	0.860929	1.78249	62.4058	88.1182
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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