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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047161 ID=TCONS_00047161|Name=TCONS_00047161|organism=Clytia hemisphaerica|type=transcript|length=2072bp
ttttaatttaattttgagaaacaaattgttttaattgttttgtttacatt
tgataTACAAAGGATCATTGAACTTTTATTGAATCTCAGACAAAAAGTTC
TTCCATTTGAAAGACCTTCAGCACAATTCTTAAGGTGAAAACCACTCAAG
CGTACCATatctcatcaattattcatAACccattcaaattttcaataatg
TAAAATTACAATTCGGCATATTCTTAAGACGTAGAACAAGAAAGTTTAGA
TTCCTTTTAATTAACTTTAATTGGATGAAGAATTAACCCAATTTAGgggt
tcaaattaaaaaaaaatgaggcTTAGGCTGCTAGTATTATTACTAGCCCT
AGCTTTATGCTTGACAAATGCAAAACCACTGACGGATACCCAAACAGAGG
AAAGTCCCGATGCAACTCCAGAGAAGAAAGACAATACTCCTGAACCAAAC
ACTGAACAATCACCAGATGAAGACCAAAAGTCAACAGAAGAGGTTGATCA
ACCTTCTTCATCAGAGAAAGAAACATCTACTGAATCACAACCAGAAGAAG
CTTCAGAATCTGAATCCACCAAGGAGGTAGAAGAATCGAATGATGATACT
ACTGAAGGTGCCAAGAAGACTGAAGTCCCTAATAagaaaccgaagaagaa
gaagaaatcttccaaaagcaaGAAAACAAAATCCAAAGCCAAATCTACTA
AAGAAATAGACCGTCGATATGGTATGGGCGGTTATGGCGGTGGTATGGGC
GGACATCATATGGGTGGACATCACATGGGTGGACACCACATGGGACATCA
CGGTCACCATGGACACCATGATCACGATCACGGACATGAGCATTATGAAG
AATGGGATCACCATGGAGAGCATGGAGACCACCACGGTGGAGGACACGGA
CATCACCACGGTCACCATGGACACCACGATCACCACGATCATGGTCACCA
TCATGGTTTCCACCACGATTGGCATCATGATCATGGAGGTCATCATGGTG
GACATCACGGTCATGGAGGTGGAGGAATGATGGGAGGTGGAGGATACCGT
CGTGATGAGCTGACTGCTAACAAGAGGTTTTTCATGCCATTCAGTCCTTT
CAGTGGAGGAAATCCTGGACCCTTCAATGAGGGAATAGTTGATGTTTTTA
ACATGAATCCACTTCAATGGCCCAACCCCTGGACACGAAATTGGATCGGT
GCTAACGAAGGAGGACCACCTGTCTCTGGTGTCTTCAACACACAATACCA
AATACCCGCACTTCCTGTTGTAGCCGCTTTGAATTCAGGATTACTAAGCA
ATTCAGCGGGATCATGGGAAAGTCCGGCAGTGTTGGCTGGTAGCAGAAGA
TCATTAAAGAGCACTGGATGTCAACCAGGAGATTCTGGTAAACGTGGATG
CGGATGTGCTGGTAATCATGAGAAATGCGGTGGACAGGGATACAGCGGTG
GGTTTGGTTTGAACCACGGTGATCATTATGATGATGGCTTCCACGGTGGC
CTACATTTCCCACTTGGTGGATGGTATGGTTGGGGTGCATGGCCATGGGG
CACTTACGGTGATTTTGTCGGCCACCATGGTAATGCTGTACCATGTGATG
TACCACACCACGAACATCATTTAGATAACAACAGTGGTTATGATGAAGGT
GAAGGACGAGTTGGTCATACCGGTGGCTACGGTGGTGGTGAATACAGCGG
GCATCACGGTGATTGTGGTCACGGACACGGCGGTTGTGGAGGTCATGATG
GACACCATGGATCAGGATACGGTGGATATGCAGGTCATCACGGTGGTCAC
GGCAGCTACGGAGGAGTTGGAACACAAAGCGGACACGGTCATCACGGAGG
TGGTCATGGTCACGGCGGCTACGGTAACCACGGAAGTTACGGCGGCCATG
GACACGGACATTGTAGAAGTCAAATTCCTAAAAGCACAATCGATAAACCA
TTCTTACCAATGTCAGCTGTTATGGAAGACTTTTAGATCAATCAAATAAT
AATAGCCAATAAACACTATTTATATAACCGTCatagtattttttcattga
ttAATATTTAATCTTTTGTCAT Run BLAST on NCBI transcript from alignment at scaffold_123:57466..61167+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047161 ID=TCONS_00047161|Name=TCONS_00047161|organism=Clytia hemisphaerica|type=transcript|length=3702bp|location=Sequence derived from alignment at scaffold_123:57466..61167+ (Clytia hemisphaerica)
ttttaatttaattttgagaaacaaattgttttaattgttttgtttacatt
tgataTACAAAGGATCATTGAACTTTTATTGAATCTCAGACAAAAAGTTC
TTCCATTTGAAAGACCTTCAGCACAATTCTTAAGGTGAAAACCACTCAAG
CGTACCATatctcatcaattattcatAACccattcaaattttcaataatg
TAAAATTACAATTCGGCATATTCTTAAGACGTAGAACAAGAAAGTTTAGA
TTCCTTTTAATTAACTTTAATTGGATGAAGAATTAACCCAATTTAGgggt
tcaaattaaaaaaaaatgaggcTTAGGCTGCTAGTATTATTACTAGCCCT
AGCTTTATGCTTGACAAATGCAAAACCACTGACGGATACCCAAACAGAGG
AAAGTCCCGATGGTATGttcaatttttattgttttgcttctttttcattt
ataacTGACTGGTTTCAGCAAAGTTGTTTTTCTAGGGTAATATTTATTCC
tgagaaatttttcttgaaagcaTTCCTAATAAAGTCTTTTCTCTTGATAG
ttgatttttttcgtttttctctTAATTGTATTTGCATACAGATTCCATTA
AATCATGAGTTTTGAGCTTGTGGACAACGCACTTTTTCGTTGTTTGAATT
TTCGGTTGGCTAATAAATGCTGAAACTTGCCAGAAAATTATCTTTAATTG
TATCAGAAAGAACCGAgaatagattttaaaattgGACTTCGTTTCCTCCG
AAAGCTTAAGTTAACCAAGATCAAATACCAAGCTTCTCCAAAAACCTTCT
TATAAATTCCCTGGTTATTTCATCTTCTATTCACACATTACAGCAACTCC
AGAGAAGAAAGACAATACTCCTGAACCAAACACTGAACAATCACCAGATG
AAGACCAAAAGTCAACAGAAGAGGTTGATCAACCTTCTTCATCAGAGAAA
GAAACATCTACTGAATCACAACCAGAAGAAGCTTCAGAATCTGAATCCAC
CAAGGAGGTAGAAGAATCGAATGATGATACTACTGAAGGTGCCAAGAAGA
CTGAAGTCCCTAATAaggtatttttcttttcttatacaAGTTTGTTGCCA
ATCTATTGGCATTTTTAAAATCTATGGCTCAAACATGAGGTTTGAAGTAC
TCACAATTTAGTTAAGCACGAGAATGTTAAAAAAAGACTTTCGAATTCTG
TTTGATTATCTGTTTCATTACAACACTCTAAGTTGAACCGTTTATGGATT
TAGAAAATCACACTGTTATACAAAATATCCAGTCATGGCATAGTACAGTT
TGTCGGAAAGATATATTCTACAAAGAAATACACCAGCAAACATTAAATAG
TTTTCATGTTTTAAGTAACTAGATGATTTTCGTCCTGAACAAGATGATag
gcaaaaaattttctttcttttccacaAATGGAATGCAGTCAACGGAGTTG
AtgagaaaaaaactgaatttcggTTTTCTGAAAATACTTTTTGTTAATAG
TTAGTAGTTTTTTCACGTAACCTTTCCCCATGAAAACAGCTCTGTTGGCT
GCTTTTGATCAAACTTGcatgtttttatcaaatgatgTATATCAATTTGC
TGTCCAAAAAAAGCCAATTTTTATGGTGAAAGAATCCTGAAGATTATCCT
TTATTGATCTGGAATGTTCTTAGTTCCCGACCGAATAAGGTACGTGCTTT
TCAAAAGCAGCAGTCAACACGGGTTGTTTTTAATGAGAAAGGGCTGTCTC
TATCACACAAacaatttgaaagttttaataatAATTACAAGTCTCAAAGT
TTTATTGGGCACAGGCTTTCTCGTAAAGACAGCTCTGTTGATTGCTgacc
ttttgtttcttttcacttttttttctaatttctgaaaattttgatcAGTT
CTTTAAATAACCTATTTACCTTTCAACCATTGCACAAAAAGGTTGCATGA
AAAAAGGTTCTACCGAGGGTCGAATAACGTTAAACGGAGTATCATTGCTT
TGCGTTAACGGAGTCGGTAGTACTGACATTTGACGTCATCGACCCTTGTA
AATTGCTCACACTTATTTCAAGTGTCTTGTTGCTTTTTTACTCCTTTGGT
GATTATCGAACGCCGTTGAACGCCATGAACTTGTACTATTAGACAAAATT
CTTATCTTAACTTATCTGCTGCATTTTACGCACATTTACTTAATTTACAT
TTACTTCATAGCGGAACCAATCTAACCCCAGTTCTTTTATCGcattctct
tttttttcatttttagaaaccgaagaagaagaagaaatcttccaaaagca
aGAAAACAAAATCCAAAGCCAAATCTACTAAAGAAATAGACCGTCGATAT
GGTATGGGCGGTTATGGCGGTGGTATGGGCGGACATCATATGGGTGGACA
TCACATGGGTGGACACCACATGGGACATCACGGTCACCATGGACACCATG
ATCACGATCACGGACATGAGCATTATGAAGAATGGGATCACCATGGAGAG
CATGGAGACCACCACGGTGGAGGACACGGACATCACCACGGTCACCATGG
ACACCACGATCACCACGATCATGGTCACCATCATGGTTTCCACCACGATT
GGCATCATGATCATGGAGGTCATCATGGTGGACATCACGGTCATGGAGGT
GGAGGAATGATGGGAGGTGGAGGATACCGTCGTGATGAGCTGACTGCTAA
CAAGAGGTTTTTCATGCCATTCAGTCCTTTCAGTGGAGGAAATCCTGGAC
CCTTCAATGAGGGAATAGTTGATGTTTTTAACATGAATCCACTTCAATGG
CCCAACCCCTGGACACGAAATTGGATCGGTGCTAACGAAGGAGGACCACC
TGTCTCTGGTGTCTTCAACACACAATACCAAATACCCGCACTTCCTGTTG
TAGCCGCTTTGAATTCAGGATTACTAAGCAATTCAGCGGGATCATGGGAA
AGTCCGGCAGTGTTGGCTGGTAGCAGAAGATCATTAAAGAGCACTGGATG
TCAACCAGGAGATTCTGGTAAACGTGGATGCGGATGTGCTGGTAATCATG
AGAAATGCGGTGGACAGGGATACAGCGGTGGGTTTGGTTTGAACCACGGT
GATCATTATGATGATGGCTTCCACGGTGGCCTACATTTCCCACTTGGTGG
ATGGTATGGTTGGGGTGCATGGCCATGGGGCACTTACGGTGATTTTGTCG
GCCACCATGGTAATGCTGTACCATGTGATGTACCACACCACGAACATCAT
TTAGATAACAACAGTGGTTATGATGAAGGTGAAGGACGAGTTGGTCATAC
CGGTGGCTACGGTGGTGGTGAATACAGCGGGCATCACGGTGATTGTGGTC
ACGGACACGGCGGTTGTGGAGGTCATGATGGACACCATGGATCAGGATAC
GGTGGATATGCAGGTCATCACGGTGGTCACGGCAGCTACGGAGGAGTTGG
AACACAAAGCGGACACGGTCATCACGGAGGTGGTCATGGTCACGGCGGCT
ACGGTAACCACGGAAGTTACGGCGGCCATGGACACGGACATTGTAGAAGT
CAAATTCCTAAAAGCACAATCGATAAACCATTCTTACCAATGTCAGCTGT
TATGGAAGACTTTTAGATCAATCAAATAATAATAGCCAATAAACACTATT
TATATAACCGTCatagtattttttcattgattAATATTTAATCTTTTGTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047161-exon-scaffold_123-1491911889:57466..57877 | TCONS_00047161-exon-scaffold_123-1491911889:57466..57877 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1510915933:57466..57877 | TCONS_00047161-exon-scaffold_123-1510915933:57466..57877 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1575043694:57466..57877 | TCONS_00047161-exon-scaffold_123-1575043694:57466..57877 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1491911889:58309..58532 | TCONS_00047161-exon-scaffold_123-1491911889:58309..58532 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1510915933:58309..58532 | TCONS_00047161-exon-scaffold_123-1510915933:58309..58532 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1575043694:58309..58532 | TCONS_00047161-exon-scaffold_123-1575043694:58309..58532 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1491911889:59732..61167 | TCONS_00047161-exon-scaffold_123-1491911889:59732..61167 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1510915933:59732..61167 | TCONS_00047161-exon-scaffold_123-1510915933:59732..61167 | Clytia hemisphaerica | exon |
| TCONS_00047161-exon-scaffold_123-1575043694:59732..61167 | TCONS_00047161-exon-scaffold_123-1575043694:59732..61167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:57466..61167 + |
Blast
The following BLAST results are available for this feature:
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