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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047168 ID=TCONS_00047168|Name=TCONS_00047168|organism=Clytia hemisphaerica|type=transcript|length=2128bp
GATACGGTGGATTGGGTGGTGGATATGGTGCAGGATCTGGTGGGTTTGGC
CTTGGTGGCGCTGTCGGAGGTTGTGGATGCAATGCCGGTGGTTGCGGTTG
CGGCCCTGGTTTCGCTCTTGGTGGTGGCTTGAACAATTACGGTGTATATG
GACATTCCGGATGGCCAGTACGCAAATTCGACAACTACCGTGTTTGTCAT
AAATGCCACGATCTACCAAGCGGTGGATCACGATGTCTGTGCAAGAGTGT
TCGTCATCATCCATTGTACTTACCTGTTGTTCATCGACCAGCTCACGTCT
ACATTGATTGCGATACCAGTGCACACAAATTCGGACACAACAGATGTTAC
GCCAGAGCTGATATTCCTACTCCTGAAGAAGAAAACACAGAGACTGGTGC
AGCCAAACAAGGCGTGTTCTATCCATATGCCAACTATGGTCCATGGTCTG
CCTACCCATGGTGGGGAGACTGGTGGGGTGGTCACGGTCATCACGCTTTT
GGAGAAGGTCACGGTTCGGGTCACGGTCAGGGTCACGGTCAGGGTCACGG
TGGTGGATGCGGTGGATGTGGTGGTTGTGGCCATCACGCAGGCGGTTGCC
GAGGTAGATGCTCAGGTTGTGGACACCACGGTATGGGACGAAATGTTGGA
TTTAGCTTCGGTCGTGGCGCTCATCTTCAAGCTTACCATTGTAAAGATCA
AGTTGAGAAAGTGAATGGAGCTGATGACCACGAAGATGCAACCACCAAGC
GATTCTGCGTTCCCATTGGATACAATGGTGGATACGGTTTCCCATACTTT
CACGGATATCCAGGAGTCGGTACGGGACTCTGGGGATGGGGATGGCCTTG
GATCAAGAATAAGGTCCCTGGATCCAAActcaaagaaaagaaagtgACAT
CCAAAGATAGCTCAGCATCCAAATCTACCAAGGATACTGCTTCTAAAGAT
ACAAAGAAGAGTGCTATCCCAAGACGACAAACCAAAAAACAAACCATCCA
TGTTGGTTACGGATACGCAAGTGGCGACAATTATCGCCTCGGATACGGAA
TGGGCGGCATGGGTGGCGTGGCTGGATTCACATCACCCCACGGTGCACCT
TTAACACAGTTCGCACGCTCACGAATTCCAGCTGCTGAATCAACGAAAGA
TGTCACCGGTACCAAACGAAACATGGCTTTTTCTCAAGAACCATCATCTA
CAGGATCAATGTTAGGACATCCAGTCACACACCCAGGGTTTACAACCATG
GGATTCCCAGGGCACGCTGATTCATCTATCGAAGCACAAAAATCAAGGAT
CCCaaagaaattgtaaatttatcGCAATCACCAACCTAATGTCTAACCTA
TATTTGTATTACATCCATCCATCCACTCACCATACAAGATGATGTTATCC
TGTTATTAATTGGTGTTATAACGTCCCAATAGTACCATAGTTCGTCTTTA
TAATTGTGTTATTCTGTAATACGTAGCTCTTGTAATAACCCCATATTTGT
TAATGTAGTTTTATGTATGTTTTATTATGTGTGTTAGATCATTTGTAAGA
TCACTCATTATAttattaggcgagaccaatttaatttgttgttctacggg
cccgaccgaccctattttcactaaaatcaaaaaaataataatattgaatt
cccactacaatatattttacacactagttatttgtaagaatcaaatttga
atataacGATCTGCccttagaacaacaaattaaattggtctcgccttatt
tAACAAAATAGTCGTGTTATATGATTTTAACCATTTGTACAATAGATTTT
ATTCTAATAGAAAAattaatcaaagtcaatttcacaTTTTATATTATCTC
CAAGAGTGCAGGTCAAATTTTATCTCACCCGcaaccaaaaaattttttcc
caaaattgctATCCCgaaaaatctcgttttttctttgtcaatttGATTTA
GGTTCACATTTATGTTGTCTCCAAGAGTGCAGGTCAAATTTTATCTCAGC
CGCAACCAaaacttttttcccaaaattgctATCCCgaaaaatctcgtttt
ttctTCCCTATGAGAAGTCAAAGTTACCTCACAAGATTTTAGCATTTCCT
AGAATGCTTCGTTTAAGTCAAATAGCAT Run BLAST on NCBI transcript from alignment at scaffold_123:63640..66929+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047168 ID=TCONS_00047168|Name=TCONS_00047168|organism=Clytia hemisphaerica|type=transcript|length=3290bp|location=Sequence derived from alignment at scaffold_123:63640..66929+ (Clytia hemisphaerica)
GATACGGTGGATTGGGTGGTGGATATGGTGCAGGATCTGGTGGGTTTGGC
CTTGGTGGCGCTGTCGGAGGTTGTGGATGCAATGCCGGTGGTTGCGGTTG
CGGCCCTGGTTTCGCTCTTGGTGGTGGCTTGAACAATTACGGTGTATATG
GACATTCCGGATGGCCAGTACGCAAATTCGACAACTACCGTGTTTGTCAT
AAATGCCACGATCTACCAAGCGGTGGATCACGATGTCTGTGCAAGAGTGT
TCGTCATCATCCATTGTACTTACCTGTTGTTCATCGACCAGCTCACGTCT
ACATTGATTGCGATACCAGTGCACACAAATTCGGACACAACAGATGTTAC
GCCAGAGCTGATATTCCTACTCCTGAAGAAGAAAACACAGAGACTGGTGC
AGCCAAACAAGGCGTGTTCTATCCATATGCCAACTATGGTCCATGGTCTG
CCTACCCATGGTGGGGAGACTGGTGGGGTGGTCACGGTCATCACGCTTTT
GGAGAAGGTCACGGTTCGGGTCACGGTCAGGGTCAGGGTCACGGTGGTGG
ATGCGGTGGATGTGATGGTTGCGGTAATCACGCAGGCGGTTGCCGAGGTA
GATGCTCAGGTTGTGGACACCACGGTATGGGACGAAATGTTGGATTTAGC
TTCGGTCATGGCGCTCATCTTCAAGCTTATCATTGTAAAGATCAAGTTGA
GAAAGTGAATGGAGCTGATGACCACGAAGATGCAACCACCAAGCGATTCT
GCGTTCCCATTGGATACAATGGTGGATACGGTTTCCCATACTTTCACGGA
TATCCAGGAGTCGGTACGGGACTATGGGGATGGGGATGGCCTTGGATCAA
GAATAAGGTCCCTGGANGACTCGGTGGTGGATACGGAGGACTCGGTGGTG
GATATGGTGGACTCGGTGGTGGATACGGTGGATTGGGTGGTGGATATGGT
GCAGGATCTGGTGGGTTTGGCCTTGGTGGCGCTGTCGGAGGTTGTGGATG
CAATGCCGGTGGTTGCGGTTGCGGCCCTGGTTTCGCTCTTGGTGGTGGCT
TGAACAATTACGGTGTATATGGACATTCCGGATGGCCAGTACGCAAATTC
GACAACTACCGTGTTTGTCATAAATGCCACGATCTACCAAGCGGTGGATC
ACGATGTCTGTGCAAGAGTGTTCGCCATCATCCATTGTACTTACCTGTTG
TTCATCGACCAGCTCACGTCTACATTGATTGCGATACCAGTGCACACAAA
TTCGGACACAACAGATGTTACGCCAGAGCTGATATTCCTACTCCTGAAGA
AGAAAACACAGAGACTGGTGCAGCCAAACAAGGCGTGTTCTATCCATATG
CCAACTATGGTCCATGGTCTGCCTACCCATGGTGGGGAGACTGGTGGGGT
GGTCACGGTCATCATTCTTGGGGAGAAGGTCACGGTCAGGGTCACGGTGG
TGGATGCGGTGGATGTGGTGGTTGTGGCCATCACGCAGGCGGTTGCCGAG
GTAGATGCTCAGGTTGTGGACACCACGGTATGGGACGAAATGTTGGATTT
AGCTTCGGTCGTGGCGCTCATCTTCAAGCTTACCATTGTAAAGATCAAGT
TGAGAAAGTGAATGGAGCTGATGACCACGAAGATGCAACCACCAAGCGAT
TCTGCGTTCCCATTGGATACAATGGTGGATACGGTTTCCCATACTTTCAC
GGATATCCAGGAGTCGGTACGGGACTCTGGGGATGGGGATGGCCTTGGAT
CAAGAATAAGGTCCCTGGATCCAAActcaaagaaaagaaagtgACATCCA
AAGATAGCTCAGCATCCAAATCTACCAAGGATACTGCTTCTAAAGATACA
AAGAAGAGTGCTATCCCAAGACGACAAACCAAAAAACAAACCATCCATGT
TGGTTACGGATACGCAAGTGGCGACAATTATCGCCTCGGATACGGAATGG
GCGGCATGGGTGGCGTGGCTGGATTCACATCACCCCACGGTGCACCTTTA
ACACAGTTCGCACGCTCACGAATTCCAGCTGCTGAATCAACGAAAGATGT
CACCGGTACCAAACGAAACATGGCTTTTTCTCAAGAACCATCATCTACAG
GATCAATGTTAGGACATCCAGTCACACACCCAGGGTTTACAACCATGGGA
TTCCCAGGGCACGCTGATTCATCTATCGAAGCACAAAAATCAAGGATCCC
aaagaaattgtaaatttatcGCAATCACCAACCTAATGTAAGTTTACCTC
AGATTTATAATTTGGCTTTATACAGGGAACTAATTACGTTACGTTTATGA
GAGAAACCTCCTTAGGCTAAAATCAAATGTGATATTTGTAGATATTTTTT
TCTTCGCTTTTGTTATTAAATTTGGACTGAAGTTTTGATTTTGttattga
aaactttttgctttCAATTGATTTTTCATTGACCAATCAAACAAAAGAAT
CAATCATTATAATTGGTATTGTGATTTATTTTCCTATATTTTATCTTTAC
AGGTCTAACCTATATTTGTATTACATCCATCCATCCACTCACCATACAAG
ATGATGTTATCCTGTTATTAATTGGTGTTATAACGTCCCAATAGTACCAT
AGTTCGTCTTTATAATTGTGTTATTCTGTAATACGTAGCTCTTGTAATAA
CCCCATATTTGTTAATGTAGTTTTATGTATGTTTTATTATGTGTGTTAGA
TCATTTGTAAGATCACTCATTATAttattaggcgagaccaatttaatttg
ttgttctacgggcccgaccgaccctattttcactaaaatcaaaaaaataa
taatattgaattcccactacaatatattttacacactagttatttgtaag
aatcaaatttgaatataacGATCTGCccttagaacaacaaattaaattgg
tctcgccttatttAACAAAATAGTCGTGTTATATGATTTTAACCATTTGT
ACAATAGATTTTATTCTAATAGAAAAattaatcaaagtcaatttcacaTT
TTATATTATCTCCAAGAGTGCAGGTCAAATTTTATCTCACCCGcaaccaa
aaaattttttcccaaaattgctATCCCgaaaaatctcgttttttctttgt
caatttGATTTAGGTTCACATTTATGTTGTCTCCAAGAGTGCAGGTCAAA
TTTTATCTCAGCCGCAACCAaaacttttttcccaaaattgctATCCCgaa
aaatctcgttttttctTCCCTATGAGAAGTCAAAGTTACCTCACAAGATT
TTAGCATTTCCTAGAATGCTTCGTTTAAGTCAAATAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047168-exon-scaffold_123-1491911889:63640..64170 | TCONS_00047168-exon-scaffold_123-1491911889:63640..64170 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1510915933:63640..64170 | TCONS_00047168-exon-scaffold_123-1510915933:63640..64170 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1575043694:63640..64170 | TCONS_00047168-exon-scaffold_123-1575043694:63640..64170 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1491911889:65068..65876 | TCONS_00047168-exon-scaffold_123-1491911889:65068..65876 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1510915933:65068..65876 | TCONS_00047168-exon-scaffold_123-1510915933:65068..65876 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1575043694:65068..65876 | TCONS_00047168-exon-scaffold_123-1575043694:65068..65876 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1491911889:66142..66929 | TCONS_00047168-exon-scaffold_123-1491911889:66142..66929 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1510915933:66142..66929 | TCONS_00047168-exon-scaffold_123-1510915933:66142..66929 | Clytia hemisphaerica | exon |
| TCONS_00047168-exon-scaffold_123-1575043694:66142..66929 | TCONS_00047168-exon-scaffold_123-1575043694:66142..66929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:63640..66929 + |
Blast
The following BLAST results are available for this feature:
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