TCONS_00047172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047172
Unique NameTCONS_00047172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047172 ID=TCONS_00047172|Name=TCONS_00047172|organism=Clytia hemisphaerica|type=transcript|length=872bp
aatttcatactcAAGATGTGCATAAATGCCAAATcgttaaaaacgaaagt
ggttttttATACCGCATGTGTCTGGCAGTAGTTGCAAAGCAGCTATATGA
TAAACGACAAGAAttatgaataaaagaaaaatatgaatcTTTCCACATTT
TGTGTTTTCTTTGCGATTTTTTCATTGGTTTCTTGTAAACCAGCCACCAA
AGAAAATGATGTTGAAACATCtttaatgaaagatattttggaACGTGCTT
TTGGATTGGATAAAAAGAAGGAAGGAGTGAGcgaaatttcaaagaaagat
gAAGTTACTTCACTTAAACAAGATCAAGCGAACGATAGACGTTCACACGT
TGGGGCAAGTCATGATGACACGCGTGAGATCTTGGGACGATGTGACATTA
ACAAGAAGTGTGAAGCCAGTCAATACTGCGATGGaatgttttgttataaa
tgCAGAACAGAAGGACATCACTGTGATTTGAACGGAGAATGTTGTGCTGG
ATCAGAATGTCAGTTTGGAATTTGTACCAAAGGAGCTGCTCAAGGAGACC
CTGGTACCTTTTGTGATATCGCCAAAGACTGCAAAGGCAAAGATGTGTGC
TGTATTCGCGAAATTTCGATCAGCCATcatcattccatttgtaaactCAT
GTTAAATGAACACGAATCATGCGGACCAATCAATCTCTTCCATCAAGATA
CAATGCGTGCGCATATGGAACCTATCTGTGGTCCTTGCAAAGCTGGACTA
TCTTGCAAAGGTGTTGGAATTTTCGGACGACACAGTATCTGCCTTCCCGA
AAACGAAGAATAATTGatggttttattttttgtatattATTTTGTaatct
tttctaaaaaattaaatctaCC
Run BLAST on NCBI

transcript from alignment at scaffold_123:87627..93626+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047172 ID=TCONS_00047172|Name=TCONS_00047172|organism=Clytia hemisphaerica|type=transcript|length=6000bp|location=Sequence derived from alignment at scaffold_123:87627..93626+ (Clytia hemisphaerica)
aatttcatactcAAGATGTGCATAAATGCCAAATcgttaaaaacgaaagt
ggttttttATACCGCATGTGTCTGGCAGTAGTTGCAAAGCAGCTATATGA
TAAACGACAAGAAttatgaataaaagaaaaatatgaatcTTTCCACATTT
TGTGTTTTCTTTGCGATTTTTTCATTGGTTTCTTGTAAACCAGCCACCAA
AGAAAATGATGTTGAAACATCtttaatgaaagatattttggaACGTGCTT
TTGGATTGGATAAAAAGAAGGAAGGAGTGAGcgaaatttcaaagaaagat
gAAGTTACTTCACTTAAACAAGATCAAGCGAACGATAGAGTGAGTGCTTT
TCGATTTTATTATAAAACCAAATCTTTCGAAATTTACAGTATCTTCTAAA
CTTGTATTTCATAACATCATCCATTCTGCACATACAATTCTCTGCTCTAA
AGCGATATGGTGAATGCGACCATCTGACTTGGTTGTTCAGTCAAAACATT
CATAGCCGCGCTGccatttgcttgaaaacgaaagcgaaagcggttggatt
ctaatgtttttatttggtgcgattgttttgatttagccAATCAGCGCGCT
CAAAATCTCATCTAATAATTATCCCAAAACTGGCTGAAAAAGATGAAACT
AGTGCGCCAACCTAGGCAGATTCTCTTGCGGAGCCGTGGTCCTTAGAGTG
CATACTTGCCAACGCTGAGTAATCAGAATCTGGTCGGAGATTAGTGAATC
AGAGGAATCAAAATTGTGTTCCAGTAGCAAAGGAAAAAGTTTAGGCTAAA
TTGAAATAACAATCGAGTCAGATATACAGTGGAACCTGcgtaactcgaac
ctctataactcgaacaagagTTTTAAGGCCTCTTCAGTGAGCAAACTCTT
TTAAACAAGTCTCTTTGACTCGagatttccataactcgaacaaattccaA
TTCCCCATATGcgcgttcgagttatggagattccacCGTATTTACTTTGT
ACTTTTCTTTgatatttgacatttttcttcACTATTCTGTACACGTTTTA
AGCGTTCACACGTTGGGGCAAGTCATGATGACACGCGTGAGATCTTGGGA
CGATGTGACATTAACAAGAAGTGTGAAGCCAGTCAATACTGCGATGGaat
gttttgttataaatgCAGAACAGAAGGACATCACTGTGATTTGAACGgta
taaacacccctgtctcacagacccggtggaaccttttcctcagtggggat
aaaaatccctATAGAAGTCCCAACGTCCTAATGGTGATAGATATTCTATT
GTTTataggttaaaaaatccagtggggatggttttaaTTTNTAACTCTCT
GCTCTAAAGCGATATGGTGAATGCGACCATCTGACATAGCCGCGCTGcaa
tttgcttgaaaacgaaagcgaaagcggttggattctaatgtttttatttg
gtgcgattgttttgatttagccAATCAGCGCGCTCAAAATCTCATCTAAT
AATTATCCCAAAACTGGCTGAAAAAGATGAAACTAGTGCGCCAACCTAGG
CAGATTCTCTTGCGGAGCCGTGGTCCTTAGAGTGCATACTTGCCAACGCT
GAGTAATCAGAATCTGGTCGGAGATTAGTGAATCAGAGGAATCAAAATTG
TGTTCCAGTAGCAAAGGAAAAAGTTTAGGCTAAATTGAAATAACAATCGA
GTCAGATATACAGTGGAACCTGcgtaactcgaacctctataactcgaaca
agagTTTTAAGGCCTCTTCAGTGAGCAAACTCTTTTAAACAAGTCTCTTT
GACTCGagatttccataactcgaacaaattccaATTCCCCATATGcgcgt
tcgagttatggagattccacCGTATTTACTTTGTACTTTTCTTTgatatt
tgacatttttcttcACTATTCTGTACACGTTTTAAGCGTTCACACGTTGG
GGCAAGTCATGATGACACGCGTGAGATCTTGGGACGATGTGACATTAACA
AGAAGTGTGAAGCCAGTCAATACTGCGATGGaatgttttgttataaatgC
AGAACAGAAGGACATCACTGTGATTTGAACGgtataaacacccctgtctc
acagacccggtggaaccttttcctcagtggggataaaaatccctATAGAA
GTCCCAACGTCCTAATGGTGATAGATATTCTATTGTTTataggttaaaaa
atccagtggggatggttttaatttttaaacatttaatttcgatTGGGAAT
GAAATATAAGTCAGTTTCCCAGTGGCGCTAAAATTCCAAGATATTTTACT
TCTAGGGACGATTTTTTCTAGTGGGGTTGCGGCTTCAGCGGGtttatgac
acaggggtgtgtatAACAGATTTGGGAAAATTACCCTGATTGATTACTTA
CTCCTCGCAAAAACCATTCCCCAGAAAACAGAGACAATATTGACCCGTCT
CTCTGCACGAGGGAAATTGATCTTGTGGGGTGGGGGTTGGTATTGACCGC
TTTTTCATTATTTAAGATGAAATTTAAGGGGATAAATTATGTTTCAAATA
GAATCTTGATTCTTTATTTGAACATGGGTGTTAAAGTTAAAGACGACACT
TCAAAAGTGTTAAATTTACAATCCCACTCATCTAAAACCGTTAATTAGAA
ACCACCAATCATTTACATCGATTTTTTCTCCCATACTAGGAGAATGTTGT
GCTGGATCAGAATGTCAGTTTGGAATTTGTACCAAAGGAGCTGCTCAAGG
AGACCCTGGTACCTTTTGTGATATCGCCAAAGACTGCAAAGGTATTGTTT
TTCTGATGGTATTATTGGTATTGCTGACTATATGTGATACCACCGTCAGA
TAACTCAGCCCCTACTTTAAAGACGTCAAGTTTAGAAAATGGTTACTCTA
AGGTACCCAAtaagaaatcttgaaatttctaGAATGATCAAAGTTAGTCA
AATTAATCCCTATAAGGGTAAATTCACAACGTTTTCCTTTtccctccttt
ttagtcccgctaagggtctgAGGGTCGAAATTCGTgtggcacatacccgt
caggtCGCAACTCTAGTACCCCCCTCCCTCGGGCGAAAATATTCCTTATA
CATTTGAttctttcagaaaatgaaaGTGTCTAAACATTTTGTCAGCTACA
CTAAAAATCTTTACTTATTTCTGTCAGGCAAAGATGTGTGCTGTATTCGC
GAAATTTCGATCAGCCATcatcattccatttgtaaactCATGTTAAATGA
ACACGAATCATGCGGACCAATCAATCTCTTCCATCAAGATACAATGCGTG
CGCATATGGAACCTATCTGTGGTCCTTGCAAAGCTGGACTATCTTGCAAA
GGTGTTGGGTAAGTAAAAGATGTATAAAGTGTCTGGAGGCTACTTTATTA
AAAACATAGGTGTTAATATTTGCGGACCTTATAAAGGGACTTTCTTTTCA
ACAAAGTTTATCTAAGGGCAAGGAAACCcagaaaaaatctttctaaagGA
AGGAAATGTTTCGGAAATTTCCATAGGATCACTTGTAATCAATTTGATTC
TTTCTTAGGTTCACAATTTTCTTAAACTTAACAAGTTTACTTGGTCCAAA
ACGTGGCAGACGCCTTTAGGATGCTCCCTTTTTGTCCCTTCCCCTACTTT
ATTTCTTGAAatgttgtttaaaatttttcggaAGAATGGTAAAGTACTTA
TGAGATAATCTTGGAGATATTAAATTTCTATCTTACAAATGGTAATAATG
TAAAAGCTGTTGTGAAATAGATACTCTTTTGAGAAGTTTCATACTGAATT
TCCCAGGTCTTTCAAATTGACAGTTTCTTGCTGTGATTCGTAATCATTTT
CAGTTTCTTGCATCTCCTGTCCTTTTGTATCTGGTAGAAACCAGCAAAGA
ATACCAGCCAATAGTCCCAAACTCCCCATAATGATAAAGGGCAAACTTTC
ATGAATCACTTTGACACCTTTGGCAATCCATGGTGCACTTGCTGCTCCGA
TACGACTTGTTATTTGTAAGAACCCCATTGCTTCAGATTTGATCTTAGTT
GGGTACAGCTCAACAGACCATACATAGATTACTTGGAAACTAATGGTTAT
TAAGAATTTGCCGATCATTCCGAATGTGGTTCGCACAACTTGGTAACTTG
TTGGTATGAAAGCCACAGCAAGTGTTAAAACACCTGTTAGAAATGTACAA
ACCATTGTTGTTTTTTGCCTTCCAAATCGGTTCGGGAAATCGATAACACA
AAGCATAGCTGGGATCTCTACCACACTAACCAATGCAAAATCACGGTACA
AGGAGCCTCCAAAATCACCAACAGCTAACGAGATTCCGTAATAGACCATA
CCGTTGATCATCCAAGCGAATCCTAATAAAATGGTCTTGCGTCTCCTCTT
GTTTGTATTGAATAATTCCTTTGGGTTTGATTTATGTGTTGTGTCTTTAA
GTGGTGCTAGCTCCTCATTCGTACTCGTTTCTTTCCCATTCCATTTGGCA
ATTCTCTCGAACACTTGTAGAGCATCTTCCATCCTATTCTTCAATCTTAA
CCAGCGAATGGATTCAGGAATGAATTtccaaaacaacatcaaaacaaaat
acgGAGCTGAACAAACCACCATTAATGTTTGCCATTCTTGAATAAAGTAT
GCAATCAATGGAGTTGCACAGACTGCTAGCGAGTAACCTAATCCAATGAT
TACCGAAGCCTGAGCTCGATGTTCGGTACCAACCAACTCCATCGTTATTG
TAAATAAATTTACCGCAACTCCAGGGATGAAAAATCCAACCACGAATCGG
AACAGAATAAACAGGTAGACATTACCAACAAACGGTGAAACAGTACCAGC
TAAAACTATCATAAAATGGGAGAAAAAGAAAGCCTTTTTACGACCATAGT
TATCTGAGTGCCATCCAATTGCCAGAGCTCCAAACATCCAACCAATAAAA
AGAATCGATGTCGTCATGTAAATTATCCAATCGCGATCACAATAAATATC
GAATTCTGTAACAATTGAATATTCCTTTGGTTTCGTAAACTCCCATTCAG
TCCTTGGTATATTGCAACGTAGTTTGTTTTGACTTGTGAATGTACCGTTC
AAGTCGCAAACAGTACTGTTTGAAGCACATCTCCAGTCTGGTTCCAACCC
AGCAAAAACCATAATCAAGATTTGGAACAGTGTTGGAAATGTAAACAGGA
AGAAAACAACTTCCaataagatttgaaattttccatGACTTCCAATTTTC
TCTAGGAATCCTTCAACTGTCAGCTGTTCCTTTTTCTCCATGCTCTGTTT
TTANTCTAGGAATCCTTCAACTGTCAGCTGTTCCTTTTCCTCCATGCTAT
GTTTTTAAATCTGCTTTAATCGATGCTACTATAAAATTGGATATATCTTT
CCTTGCAGAGAATACAGCGTTGCTATTAAGTTATGCAACTGACATCTCAC
AACTaaggaaactttttttgctgCTTATTTAACCCCTTAAGTACCTTCAA
AGTATGTACATTCACAAATCTATAAAAACCTTATGTAAACAAAACCCAAT
AACTTAACACTAGCActctccaaaattttcaaaggtaTACAATTACTTCA
AAAATTTGTTTGTTCGTCTTAATTCTTTCAGAGGTTTTTTCAGACTACTT
GTTTCAATAGTTTGTTATTATAGCATTATGTATGTTGCCATAAGTACGGC
ATAAACTTTTAAGTATAGTCGTATATAATATCCATCAGCATGGTTGCACT
GTATTTTTCGTtaaccctgaaaatttcaacccCAGACCCTATAGAATACT
TAGTTTTAATAGGTGTAATTTCGTCACTTCGCCCAATTATTGTACttata
aatgaaatatttggtCTTTTgattacttttcattttctgtttCAGAATTT
TCGGACGACACAGTATCTGCCTTCCCGAAAACGAAGAATAATTGatggtt
ttattttttgtatattATTTTGTaatcttttctaaaaaattaaatctaCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030068XLOC_030068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047172-exon-scaffold_123-1491911889:87627..87965TCONS_00047172-exon-scaffold_123-1491911889:87627..87965Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1510915933:87627..87965TCONS_00047172-exon-scaffold_123-1510915933:87627..87965Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1575043694:87627..87965TCONS_00047172-exon-scaffold_123-1575043694:87627..87965Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1491911889:88679..88823TCONS_00047172-exon-scaffold_123-1491911889:88679..88823Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1510915933:88679..88823TCONS_00047172-exon-scaffold_123-1510915933:88679..88823Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1575043694:88679..88823TCONS_00047172-exon-scaffold_123-1575043694:88679..88823Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1491911889:90316..90417TCONS_00047172-exon-scaffold_123-1491911889:90316..90417Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1510915933:90316..90417TCONS_00047172-exon-scaffold_123-1510915933:90316..90417Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1575043694:90316..90417TCONS_00047172-exon-scaffold_123-1575043694:90316..90417Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1491911889:90804..90984TCONS_00047172-exon-scaffold_123-1491911889:90804..90984Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1510915933:90804..90984TCONS_00047172-exon-scaffold_123-1510915933:90804..90984Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1575043694:90804..90984TCONS_00047172-exon-scaffold_123-1575043694:90804..90984Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1491911889:93522..93626TCONS_00047172-exon-scaffold_123-1491911889:93522..93626Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1510915933:93522..93626TCONS_00047172-exon-scaffold_123-1510915933:93522..93626Clytia hemisphaericaexon
TCONS_00047172-exon-scaffold_123-1575043694:93522..93626TCONS_00047172-exon-scaffold_123-1575043694:93522..93626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:87627..93626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132585	0.209122	0.320189	0.0822765	0.428797	0.171071	2.49049	2.93846	5.34841	2.78567	3.52399	3.82156	7.93151	6.43006	5.10526	10.6644	7.92763	8.54673	0.142208	0.247864	5.11905	5.82312	5.66543	5.30854	5.15621	7.36754	1.1373	0.23492	0.0296965	0.060512
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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