TCONS_00047195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047195
Unique NameTCONS_00047195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047195 ID=TCONS_00047195|Name=TCONS_00047195|organism=Clytia hemisphaerica|type=transcript|length=483bp
GTTGAATTCAACATTCCAATCACAATGTGAAAAAGAATATCTTCGAAACC
TTGCAATGCTTCAAATCAACCAACAACAACCATCTCAGCAGCAGTATGTG
GCTCCACAACCACAACcgcctccaccacctccaccacctgcCATGGAAGG
TAGAGTAGACTTTAGACCGGGAGACTCTCaattgattaaaaagcaatgaa
tttCGACAGAGTCTTTTTAAAAAGTCTCATGCAAATATGATGTAATCATG
TCATGTCATaacaacacccccttctcacagccccggtaggattttttcag
ccagtggggataaaaaatggactgaaactcaatagggattgatattccca
tatcttTTATGGCTgcggatttcaattcttttgttttaaagtaaaaatat
tcaGCGGGGATGGGAAAAAGTATAATAtcttgcagtgaggattggtttat
ttgattgttttcagtggggacaaaaaatgGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_123:196918..197400+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047195 ID=TCONS_00047195|Name=TCONS_00047195|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at scaffold_123:196918..197400+ (Clytia hemisphaerica)
GTTGAATTCAACATTCCAATCACAATGTGAAAAAGAATATCTTCGAAACC
TTGCAATGCTTCAAATCAACCAACAACAACCATCTCAGCAGCAGTATGTG
GCTCCACAACCACAACcgcctccaccacctccaccacctgcCATGGAAGG
TAGAGTAGACTTTAGACCGGGAGACTCTCaattgattaaaaagcaatgaa
tttCGACAGAGTCTTTTTAAAAAGTCTCATGCAAATATGATGTAATCATG
TCATGTCATaacaacacccccttctcacagccccggtaggattttttcag
ccagtggggataaaaaatggactgaaactcaatagggattgatattccca
tatcttTTATGGCTgcggatttcaattcttttgttttaaagtaaaaatat
tcaGCGGGGATGGGAAAAAGTATAATAtcttgcagtgaggattggtttat
ttgattgttttcagtggggacaaaaaatgGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030069XLOC_030069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047195-exon-scaffold_123-1491911889:196918..197400TCONS_00047195-exon-scaffold_123-1491911889:196918..197400Clytia hemisphaericaexon
TCONS_00047195-exon-scaffold_123-1510915933:196918..197400TCONS_00047195-exon-scaffold_123-1510915933:196918..197400Clytia hemisphaericaexon
TCONS_00047195-exon-scaffold_123-1575043694:196918..197400TCONS_00047195-exon-scaffold_123-1575043694:196918..197400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:196918..197400 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.190789	0.195704	1.42772	2.26996	1.93173	1.16528	1.7143	0.138809	0.555131	0	0.122712	1.73858	2.67462	0.2922	0.877962	0.759737	0.57102	1.62198	2.05165	0	1.31671	0.385311	0.332663	0.139018	0.12407	0.236629	0.487753	0.231583	1.69557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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