TCONS_00047200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047200
Unique NameTCONS_00047200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047200 ID=TCONS_00047200|Name=TCONS_00047200|organism=Clytia hemisphaerica|type=transcript|length=678bp
ATCCGGGAATTACCCTTTGCATATTACCGATCACCGATCTTTTTATATCA
GGGCGGTGAGCGTTATAGCAACGGGCGCACGTAAATATACGCCCTCGTCA
GAAATGTTTTTCCTGGACACACGAGCTGAAATGACTGTTATGGAAAACCT
TCCTTATGTTTCTTAGTAAGTGTTTCAGTGAAAAAGAAATCTGCGGCCGA
GGAAAAATGTGGAAGGAAAATCTAAAGTTTCGTTTTTTATAGCTACCAAC
CAGGAGTTTTTTGGTCAAGTCATTATCAAATGGCATTTTAATCAGGCTTT
GTCTTATAAACTGGTCAAGATTTTACAAGAGGCTCCTAACAAGCTGACAA
GGCTGCCATaacaattttgcaaaaatgaagaaagggaGATAAGCCATGGA
CCTCTATGTTCAAACATTAACAGGAACTTTATTTGAATTACGTGTCAGCC
CATTTGAAACAATATTAAGTATCAAAGGCAAAGTTCAGAGGCTTGAAGgt
ATACCCATCTCTCAACAACATTTGATATGGCAATCTACTGACCTTCAGGA
TGACTTTTGTCTGCATGATTATGGGTATgtatcactgacctttatatatc
cctggactaAGCTATATCCCCATCTTTGATAGAAGTCTTTTTTGAAGGGG
TActcgcaaagaagccattgcactgtta
Run BLAST on NCBI

transcript from alignment at scaffold_123:271253..276450+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047200 ID=TCONS_00047200|Name=TCONS_00047200|organism=Clytia hemisphaerica|type=transcript|length=5198bp|location=Sequence derived from alignment at scaffold_123:271253..276450+ (Clytia hemisphaerica)
ATCCGGGAATTACCCTTTGCATATTACCGATCACCGATCTTTTTATATCA
GGGCGGTGAGCGTTATAGCAACGGGCGCACGTAAATATACGCCCTCGTCA
GAAATGTTTTTCCTGGACACACGAGCTGAAATGACTGTTATGGAAAACCT
TCCTTATGTTTCTTAGTAAGTGTTTCAGTGAAAAAGAAATCTGCGGCCGA
GGAAAAATGTGGAAGGAAAATCTAAAGTTTCGTTTTTTATAGCTACCAAC
CAGGAGTTTTTTGGTCAAGTCATTATCAAATGGCATTTTAATCAGGCTTT
GTCTTATAAACTGGTCAAGATTTTACAAGAGGCTCCTAACAAGCTGACAA
GGGTAAGACTTTTATTTATAGACAGAACAAAACAGAGAGCCAAACAAGGG
ACCCCTCCGCTCCCTGTCTCTGCCCCTGGGCCCTGGTCtgcttcttttta
ttttgcgtaccgtgagatcgggagGGAACCTTGCATAGCCATAaaatgac
tgaccaattaaagcagcaaaatttcaaaacaaatgaactacacagCTCCA
TTTTGCAGCTCTActttaccatttttgttttgatttaacttttgtatttt
aatgacgacctgcCCAGGTTCCATgtggttccatcatttgttgaTGGCTA
ttagctatgcatgttagcctccactgatgcaagttatccgATCTCACGGT
ATGCTTTTTCAATGAACCAGATGATATCAGTCAAACTAGCGACTCCagac
agtgcgtcacaaacagccatataaacaaaactcaacattctcacaaaagt
tgtctttttgatttcccaaacattcgtctcaagcgttccCTTCCACANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgggtaaacgaga
caaaactctaaaaaagctggtgttttgacgcgcttccgtgctctcgaaat
atcgcggtttgagacgcactgccagaagtcatgcaactttcgttgacacg
tcaaaccaaatgtttcatttttccgtgaactttgaacccttggacctttt
tttctatgtatgctaaagggTTCTGGTTTTTaataaatgaaagcccgtga
tcttagctttccagcggtatataacactgtggacacgggctagacggaaa
attggtaaaaatgctagcaactccagaagatttattcaagtttaaatttt
tttttcaaaatctatcctatcttgtagagctttgaaaaagaaagaaaatg
aggggtcataggcctccagaggattagtggttgtaaagatattcaaaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTAgcgacc
cccggttttttctctctttttctaacaAATTCCCGCgcgttagtgtagac
acaactttaatccggggaaatgaagcgttttcattggtctaaaatcacgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNttggaataccggttgaaacacttgtgcgAACCGAGAAATC
CCAGTAAAGTTTGATTGTTTGGATAACACCGTTCAATGTGTTCGatttca
atacacctttcccgtaattcttaaagctaatgcgcgcgcattattttgat
gctctccaccgtttgccTGTGTTGTTTCCTCCTTAGGGAAAGAtggtttt
ttaagattttctttaGTTATGTCGAACAAAATctcctcaaattttagtat
gttcaatctattcatgataatATACCagcctgaaaatcttttgacccact
ttccctaacccctcgcaggcaaaaacgcgtttgtttacctcccaaataAT
TtcatacacaacggtggagcacACATTCAGGCTAGctttaaagctctaaa
acagcatctaataacatgaaaaccagaatatgattcttcaatgagtatca
aaactataaagtgcacttacaaacatctaATAACcccactgtcatcattg
acaataaaacaaactattttctgtcaagagccttgtaaacattccagcAA
CTTCCATCGAAAAGATCTATCActgctcagtctaccatttttagcgcggt
ccgaggattgagccgagaaagCTCGCAGCACGGGTGAAAAACTtaaatct
gtcaatcattttctcaagcgaagagtacgcaaagTGATTCTAGCTTCAAG
ATAGTgcgcggatcatcagtggatagcattcaattatcattatcccttta
tttccATTCcttagaacttttgcaaaaagaGGGAtaaatagaaaagtttt
attttttattgctttattcacatactgaatttgaaagatctaatgtggcg
tttttttgcaaacttgaaaaaaatgatttttgtcctgcttttTGGGGGTG
GTGCTCGGATCTAGGTGGTTTTCTTCTCACCCGTAGATTACTTTTCGTCC
AAAAAAGGATTTGACGCTCAAATCAAAGAAGCCCTGTACAGTGACTTATT
TTATTAacgaaaataattcaaaaaatggaGGTCTTCCGCGCAAGACCTTG
ATATTAGTTGTTGTCCCGTAAGTTTGGATATACCGATATACCCATGATTG
TTTTGATACCAAGGTATTTATTATTTTGTCTTTTAAGGCGCGTCATGTCG
AcctcaaatttgtaaatacagCAACATTTTTTACATCTTTTCCATTCTTA
TACACTGATGATATATTGATGCTCTCAATTTGAGGTTTTACTGTTCAATA
AGTTCTCGTTTTTGATTAAATTGAAATTGCTTTCAAACTTCCTGAAGAAA
CTCTCCATAATTGAAGGTTCATTATTTACTAAGCTCATATTTACTGTATG
GTGAAGATTTCAAGTCCCATTCTCTTATTccttttaaaacataaaaaggt
ATTATTACGAGACATATTCACACTACTCGTTATACTCTTGTggttgataa
aaaaatcaaatcccCTTAAAGATaaagttagagagcatcaacaataccat
ctttgtcatcctaagggcttttgatgcgcaTGCTAAACCAGCGTTTGTGA
AAACAGGAACCGTCTAATTTATACTAATTTTATAATAATATGGTTTTCTT
TTTTAGCTGCCATaacaattttgcaaaaatgaagaaagggaGATAAGCCA
TGGACCTCTATGTTCAAACATTAACAGGAACTTTATTTGAATTACGTGTC
AGCCCATTTGAAACAATATTAAGTATCAAAGGCAAAGTTCAGAGGCTTGA
AGGTAACCAATCACAAAGTTGagataatttatatttttaaaccaGCTACA
TTATACAAACTGAAAAAACTGAgacttaaaaaacttaaaaactcaGTTAC
AATAATTGGAGTTTTAGTCTTAAGTGACATGTAAAATTTCATGAAACTTG
TCTTCTCTATCGCTTGTGATAATTGTAAAACTATTTTATGGGGTGAATGA
TAAactgaaaaatatgtttttatattgagtacattttttgtgattttcaa
agttttcttatttttcaggtATACCCATCTCTCAACAACATTTGATATGG
CAATCTACTGACCTTCAGGATGACTTTTGTCTGCATGATTATGGGTATgt
atcactgacctttatatatccctggactaAGCTATATCCCCATCTTTGAT
AGAAGTCTTTTTTGAAGGGGTActcgcaaagaagccattgcactgtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030071XLOC_030071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047200-exon-scaffold_123-1491911889:271253..271604TCONS_00047200-exon-scaffold_123-1491911889:271253..271604Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1510915933:271253..271604TCONS_00047200-exon-scaffold_123-1510915933:271253..271604Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1575043694:271253..271604TCONS_00047200-exon-scaffold_123-1575043694:271253..271604Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1491911889:275859..276004TCONS_00047200-exon-scaffold_123-1491911889:275859..276004Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1510915933:275859..276004TCONS_00047200-exon-scaffold_123-1510915933:275859..276004Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1575043694:275859..276004TCONS_00047200-exon-scaffold_123-1575043694:275859..276004Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1491911889:276271..276450TCONS_00047200-exon-scaffold_123-1491911889:276271..276450Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1510915933:276271..276450TCONS_00047200-exon-scaffold_123-1510915933:276271..276450Clytia hemisphaericaexon
TCONS_00047200-exon-scaffold_123-1575043694:276271..276450TCONS_00047200-exon-scaffold_123-1575043694:276271..276450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:271253..276450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4815	11.2125	2.99774	1.6759	43.2532	37.0006	22.3685	24.7651	17.9123	26.2932	22.4552	17.0786	7.69735	7.41905	4.51017	7.92855	6.92799	8.49788	6.59385	9.67682	7.09442	8.45482	11.5356	11.276	60.182	36.6046	21.5748	18.5973	10.9988	13.6868
Blast
[Close]
BLAST of TCONS_00047200 vs. Swiss-Prot (Human)
Match: ZFAN4 (AN1-type zinc finger protein 4 OS=Homo sapiens GN=ZFAND4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.812e-23
Identity = 38/59 (64.41%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:  396 MDLYVQTLTGTLFELRVSPFETILSIKGKVQRLEGIPISQQHLIWQSTDLQDDFCLHDY 572
            M+L+++TLTGT FELRVSPFET++S+K K++RLEGIPI +QHLIW + +L++D+CL+DY
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDY 86
The following BLAST results are available for this feature:
BLAST of TCONS_00047200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFAN44.812e-2364.41AN1-type zinc finger protein 4 OS=Homo sapiens GN=... [more]
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