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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047216 ID=TCONS_00047216|Name=TCONS_00047216|organism=Clytia hemisphaerica|type=transcript|length=2144bp
GTTACTTCTGAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGA
CAATGATTGTTCTCACAATGGCCCTTTTCGCTGtttgTTCAGCCTCCTCA
TTTTACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACC
ACACGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTAC
AATGCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATC
TTTAACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAA
ATTCGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATT
TCAACAAAGACACGACAACGATGACAACGATCCCTACTGCGACCACCTCC
ACAACAACTGAGAAAATCGAACAACTTCCTCATGATATTCACTGCCCCTC
CTACTTGTGCAAATGGAAGCCAAACGGTGCTTTATTCCGCTTGAGAAATG
ACAAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTACTGTAGA
CAATGCCCTTCACATcaatatttcaacaacaaatttTCTGTTTGTGTCAG
AAGAACTGTTGCGAAAGACTGGTAAATCCGAAAGGATAACGTAATGAAAT
CTTGGAACTGGAAATGCTACTGGACACACGTTATAATAgtcttatatttt
ttgtttgttaaatttctataatcttttgaatttatttcatgtgattatca
tattatttttttctttgaaagcgTTGAtcgtattttgaaaatatatactc
AGGATAAATCGAAACTTACTGTCACATCGTTACCCAGTTTATCTTCAAGT
TTTGCAAGGGATCGAAAAAAACAACTGCTTATTCTAATTGgggttaaaaa
atattaaaaattctaGTGATTACCGATTAATGtacaaaaatacaattaaa
aaaaatcattgttacAATAAATTGGttagaaaattaaaattgatttacaa
attgttttgttaaaaaattataatacaATTTAGTAGTGAGCATAATTAGC
AATACCTTCTAATGGTCCATGactaaatcaaaattttaaagaagaaagaC
CTGAAGGAGAACCAATCTGATCTGATAATGTAGTTTCAACGTTATGGATG
AAGATTACTATCTCCAAAATTGCAAATACGGATTTAAATCAAATCTACAA
TGGACATGGTTCGGAGAATTTTAGTGTGTCGAGAAAATAAACGGAAATAG
ATTTTGGGTGGTTTAAAAATCTCGTAATATCGCCAGAGCTTAGAACAATT
GAAATAAAATGGAATTCCTtatgtttaaaaataaatatattttctatTCT
CAAACgtaatgaaattattttttgaaaaacaatttggATGATTAGGTATT
GAAAATCCCTGGTCGAGGCACTCGGGCGATATTGGGAACGGGGACGTGTC
ACTGGTCAGGGTTTctttttttaggctctgaagatatctgacagggtccc
aaatttactaatttttaacatttgtacCTGACAGGGTCGTCTTTTAGgtc
atttttgacaattttcagggtggaaatcaaaatttttaggatGAAAATGG
GAAATTTGTTTCGATTTTCCTtccgacagggtcccaaatttaccaaacat
tcatatctgacagggtccacttttcaaactcccgCGGCACATCCCCGTCT
GCCGTCAAGGTCAGCCCCCCGGGTGAAATCCCTATTTATAACTTCTGTTT
TCCGGACACACTGTATAATGAACCGAGCTTTTAAAAACTCTGAACAATGT
GAGTTAGGATGTTTTAGTCACTATATAAACCCAGCTACCTTTATAATGCT
GTGTCTCTGTGACTTCAAGATTTCCAACTGATTCTAGAATATCCGTTATT
TCGTTCTGAGTaaaaatatggtaatatttCTGCTCTTCCTCAATGTCAGT
TTTCCGGTTAATTCCCAAGTTATTTgttattttatcttttcctttatgtt
tcaaccatgattgtattTCTGGGAAGAGGTTGGAACAAAGTTTTTCTTTC
GTTTCACTGATTAGCGATCCTATTGGTGTGTTTTTCTTGAGAATAGCATC
TGTGTTCGGAGATGTATTGTTTTTGTTAGCTGTGAAAAAGAGAA Run BLAST on NCBI protein sequence of TCONS_00047216-protein >TCONS_00047216-protein ID=TCONS_00047216-protein|Name=TCONS_00047216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
LLLKQTSTSEKQLKMKTMIVLTMALFAVCSASSFYEPYNDCPSSLCKWKP
HGATFRLSDKLAPVFVQCSHGNAICLNCPHGTIFNNQHNVCVRDQRGSKK
FGHFNKHGHHGDEVHHFNKDTTTMTTIPTATTSTTTEKIEQLPHDIHCPS
YLCKWKPNGALFRLRNDKPQYYVQCSNGIAYCRQCPSHQYFNNKFSVCVR
RTVAKDW Run BLAST on NCBI transcript from alignment at scaffold_123:459275..461746+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047216 ID=TCONS_00047216|Name=TCONS_00047216|organism=Clytia hemisphaerica|type=transcript|length=2472bp|location=Sequence derived from alignment at scaffold_123:459275..461746+ (Clytia hemisphaerica)
GTTACTTCTGAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGA
CAATGATTGTTCTCACAATGGCCCTTTTCGCTGgcaagtttttcaatttt
taattttaagttaAACCTTTGAAACttgttcttctttattttttacacTC
TTACGAGATAACTTTTAGTCTGCCATTTTACAGTGTTTAGTGTGGATTTT
CTATGAAtgagatttgttttcatttttcagtttgTTCAGCCTCCTCATTT
TACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCACA
CGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACAAT
GCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCTTT
AACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAATT
CGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTTCA
ACAAAGACACGACAACGATGACAACGATCCCTACTGCGACCACCTCCACA
ACAACTGAGAAAATCGAACAACTTCCTCATGATATTCACTGTAAGTAgaa
ctttttttgcttatatggCAACAGCATGATAATCTTTGGTGTTGAGTATA
GGTAGAGGGTCTTTTATATTTCACTTAATGAGATGTTTTACTACAAAATG
ATACGGGGTTGTTTTGCAAAGTTAGTTTCTCAATTTAGTTAATAACGAAA
ATATTACGTTATTTCTACCAGGCCCCTCCTACTTGTGCAAATGGAAGCCA
AACGGTGCTTTATTCCGCTTGAGAAATGACAAACCACAATATTACGTTCA
ATGTTCGAATGGAATCGCTTACTGTAGACAATGCCCTTCACATcaatatt
tcaacaacaaatttTCTGTTTGTGTCAGAAGAACTGTTGCGAAAGACTGG
TAAATCCGAAAGGATAACGTAATGAAATCTTGGAACTGGAAATGCTACTG
GACACACGTTATAATAgtcttatattttttgtttgttaaatttctataat
cttttgaatttatttcatgtgattatcatattatttttttctttgaaagc
gTTGAtcgtattttgaaaatatatactcAGGATAAATCGAAACTTACTGT
CACATCGTTACCCAGTTTATCTTCAAGTTTTGCAAGGGATCGAAAAAAAC
AACTGCTTATTCTAATTGgggttaaaaaatattaaaaattctaGTGATTA
CCGATTAATGtacaaaaatacaattaaaaaaaatcattgttacAATAAAT
TGGttagaaaattaaaattgatttacaaattgttttgttaaaaaattata
atacaATTTAGTAGTGAGCATAATTAGCAATACCTTCTAATGGTCCATGa
ctaaatcaaaattttaaagaagaaagaCCTGAAGGAGAACCAATCTGATC
TGATAATGTAGTTTCAACGTTATGGATGAAGATTACTATCTCCAAAATTG
CAAATACGGATTTAAATCAAATCTACAATGGACATGGTTCGGAGAATTTT
AGTGTGTCGAGAAAATAAACGGAAATAGATTTTGGGTGGTTTAAAAATCT
CGTAATATCGCCAGAGCTTAGAACAATTGAAATAAAATGGAATTCCTtat
gtttaaaaataaatatattttctatTCTCAAACgtaatgaaattattttt
tgaaaaacaatttggATGATTAGGTATTGAAAATCCCTGGTCGAGGCACT
CGGGCGATATTGGGAACGGGGACGTGTCACTGGTCAGGGTTTcttttttt
aggctctgaagatatctgacagggtcccaaatttactaatttttaacatt
tgtacCTGACAGGGTCGTCTTTTAGgtcatttttgacaattttcagggtg
gaaatcaaaatttttaggatGAAAATGGGAAATTTGTTTCGATTTTCCTt
ccgacagggtcccaaatttaccaaacattcatatctgacagggtccactt
ttcaaactcccgCGGCACATCCCCGTCTGCCGTCAAGGTCAGCCCCCCGG
GTGAAATCCCTATTTATAACTTCTGTTTTCCGGACACACTGTATAATGAA
CCGAGCTTTTAAAAACTCTGAACAATGTGAGTTAGGATGTTTTAGTCACT
ATATAAACCCAGCTACCTTTATAATGCTGTGTCTCTGTGACTTCAAGATT
TCCAACTGATTCTAGAATATCCGTTATTTCGTTCTGAGTaaaaatatggt
aatatttCTGCTCTTCCTCAATGTCAGTTTTCCGGTTAATTCCCAAGTTA
TTTgttattttatcttttcctttatgtttcaaccatgattgtattTCTGG
GAAGAGGTTGGAACAAAGTTTTTCTTTCGTTTCACTGATTAGCGATCCTA
TTGGTGTGTTTTTCTTGAGAATAGCATCTGTGTTCGGAGATGTATTGTTT
TTGTTAGCTGTGAAAAAGAGAA Coding sequence (CDS) from alignment at scaffold_123:459275..461746+ >TCONS_00047216 ID=TCONS_00047216|Name=TCONS_00047216|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_123:459275..461746+ (Clytia hemisphaerica)
TTACTTCTGAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGAC
AATGATTGTTCTCACAATGGCCCTTTTCGCTGtttgTTCAGCCTCCTCAT
TTTACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCA
CACGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACA
ATGCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCT
TTAACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAA
TTCGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTT
CAACAAAGACACGACAACGATGACAACGATCCCTACTGCGACCACCTCCA
CAACAACTGAGAAAATCGAACAACTTCCTCATGATATTCACTGCCCCTCC
TACTTGTGCAAATGGAAGCCAAACGGTGCTTTATTCCGCTTGAGAAATGA
CAAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTACTGTAGAC
AATGCCCTTCACATcaatatttcaacaacaaatttTCTGTTTGTGTCAGA
AGAACTGTTGCGAAAGACTGGTAATTACTTCTGAAGCAAACTTCAACAAG
TGAAAAACAACTCAAAATGAAGACAATGATTGTTCTCACAATGGCCCTTT
TCGCTGtttgTTCAGCCTCCTCATTTTACGAACCTTACAACGATTGTCCA
TCAAGTCTTTGCAAATGGAAACCACACGGTGCAACCTTCAGATTGAGCGA
TAAATTGGCGCCTGTTTTCGTACAATGCAGTCATGGCAACGCTATTTGTT
TGAACTGTCCACATGGTACCATCTTTAACAATCAACATAATGTTTGTGTC
CGAGATCAACGTGGCAGCAAGAAATTCGGACACTTTAACAAGCATGGTCA
CCATGGAGATGAAGTTCACCATTTCAACAAAGACACGACAACGATGACAA
CGATCCCTACTGCGACCACCTCCACAACAACTGAGAAAATCGAACAACTT
CCTCATGATATTCACTGCCCCTCCTACTTGTGCAAATGGAAGCCAAACGG
TGCTTTATTCCGCTTGAGAAATGACAAACCACAATATTACGTTCAATGTT
CGAATGGAATCGCTTACTGTAGACAATGCCCTTCACATcaatatttcaac
aacaaatttTCTGTTTGTGTCAGAAGAACTGTTGCGAAAGACTGGTAATT
ACTTCTGAAGCAAACTTCAACAAGTGAAAAACAACTCAAAATGAAGACAA
TGATTGTTCTCACAATGGCCCTTTTCGCTGtttgTTCAGCCTCCTCATTT
TACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCACA
CGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACAAT
GCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCTTT
AACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAATT
CGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTTCA
ACAAAGACACGACAACGATGACAACGATCCCTACTGCGACCACCTCCACA
ACAACTGAGAAAATCGAACAACTTCCTCATGATATTCACTGCCCCTCCTA
CTTGTGCAAATGGAAGCCAAACGGTGCTTTATTCCGCTTGAGAAATGACA
AACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTACTGTAGACAA
TGCCCTTCACATcaatatttcaacaacaaatttTCTGTTTGTGTCAGAAG
AACTGTTGCGAAAGACTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047216-exon-scaffold_123-1491911889:459275..459357 | TCONS_00047216-exon-scaffold_123-1491911889:459275..459357 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1510915933:459275..459357 | TCONS_00047216-exon-scaffold_123-1510915933:459275..459357 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1575043694:459275..459357 | TCONS_00047216-exon-scaffold_123-1575043694:459275..459357 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1491911889:459505..459864 | TCONS_00047216-exon-scaffold_123-1491911889:459505..459864 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1510915933:459505..459864 | TCONS_00047216-exon-scaffold_123-1510915933:459505..459864 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1575043694:459505..459864 | TCONS_00047216-exon-scaffold_123-1575043694:459505..459864 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1491911889:460046..461746 | TCONS_00047216-exon-scaffold_123-1491911889:460046..461746 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1510915933:460046..461746 | TCONS_00047216-exon-scaffold_123-1510915933:460046..461746 | Clytia hemisphaerica | exon |
| TCONS_00047216-exon-scaffold_123-1575043694:460046..461746 | TCONS_00047216-exon-scaffold_123-1575043694:460046..461746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:459275..461746 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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