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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047222 ID=TCONS_00047222|Name=TCONS_00047222|organism=Clytia hemisphaerica|type=transcript|length=3656bp
CTTACATTAGGTTGGTGATTGCgataaatttacaatttctttGGGATCCT
TGATTTTTGTGCTTCGATAGATGAATCAGCGTGCCCTGGGAATCCCATGG
TTGTAAACCCTGGGTGTGTGACTGGATGTCCTAACATTGATCCTGTAGAT
GATGGTTCTTGAGAAAAAGCCATGTTTCGTTTGGTACCGGTGACATCTTT
CGTTGATTCAGCAGCTGGAATTCGTGAGCGTGCGAACTGTGTTAAAGGTG
CACCGTGGGGTGATGTGAATCCAGCCACGCCACCCATGCCGCCCATTCCG
TATCCGAGGCGATAATTGTCGCCACTTGCGTATCCGTAACCAACATGGAT
GGTTTGTTTTTTGGTTTGTCGTCTTGGGATAGCACTCTTCTTTGTATCTT
TAGAAGCAGTATCCTTGGTAGATTTGGATGCTGAGCTATCTTTGGATGTc
actttcttttctttgagTTTGGATCCAGGGACCTTATTCTTGATCCAAGG
CCATCCCCATCCCCAGAGTCCCGTACCGACTCCTGGATATCCGTGAAAGT
ATGGGAAACCGTATCCACCATTGTATCCAATGGGAACGCAGAATCGCTTG
GTGGTTGCATCTTCGTGGCCATCCCCATCCCCATAGTCCCGTACCGACTC
CTGGATATCCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATG
GGAACGCAGAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATT
CACTTTCTCAACTTGATCTTTACAATGATAAGCTTGAAGATGAGCGCCAT
GACCGAAGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCT
GAGCATCTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCC
ACCGCATCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGAC
CTTCTCCAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCAT
GGGTAGGCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTG
TTTGGCTGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAG
CTCTGGCGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAA
TCAATGTAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATG
ATGACGAACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGT
GGCATTTATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCG
GAATGTCCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACC
AGGGCCGCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGC
CACCAAGGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCA
CCGTATCCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCC
ACCACCGAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAA
GAGAAGGATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACAT
GCACGGCCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGT
CAAATAACGGAACGAATGCGTGTTATGANATAAGCTTGAAGATGGGCGCC
ATGACCGAAGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAAC
CTGAGCATCTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACAT
CCACCGCATCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTG
ACCTTCTCCAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACC
ATGGGTAGGCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCT
TGTTTGGCTGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATC
AGCTCTGGCGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGC
AATCAATGTAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGA
TGATGACGAACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATC
GTGGCATTTATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATC
CGGAATGTCCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAA
CCAGGGCCGCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGC
GCCACCAAGGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATC
CACCGTATCCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTAT
CCACCACCGAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATG
AAGAGAAGGATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACAC
ATGCACGGCCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCA
GTCAAATAACGGAACGAATGCGTGTTATGATCCCAGTCAGACCAATCATC
CCCGAAATGGTCATATCCGAAACTCCATGGGCCTTGGATGCGATGATCAT
GGTTATCATGCCCTGAACCATGATCACTAAAATGGTACCCACCGTGTCCA
GTTGTTCCCAAATGGCATCCACATCTCTTGGTGACCTTTGGATCTTTGGA
TTTGCAACAGTCAGGGATTTTGCTCTTGTAGTGACCACCAACGTGTCCAC
CACAACCACCGTGTCCACATCCACCATGGCCGTTTCCGCCATATCCATGA
CCTCCATAGCCACCATATCCTCCTCCGCAGCCACCATGACCGCAACCACC
GCCATTTCCTCCGTAGCCTCCGTTGCCGCCACCGTATCCACCCAAACCGC
CGCCATAACCGCCACCGTATCCACCCAAACCACCGCCATAGCCGCCACCG
TAGCCACCACCGTGACCGCCGTGTAAGCCATGGTGACCCCATTGCCAGCC
ACCACCATCACCAATAGCGTGAGGGTGTCCCCAGTGGGAGTGACCCCAAC
CTCCCCAGTGATCTCCAACTAACCACCATTTCTTGGAAGCATCTTCACCG
TCAGTGGCATCTTCAGCTTTTTGAGGGGTAGCagttttggttttggtttt
gtCAACTTTCTCACGTTTGTATCCGCCGCCGCCACCGTGGTGACCACCGT
GATGATGTCCGTGCTCACCGTGATGTCCTCCTTCGTGGTGTCCATGATGT
TCACCTTCATGACCACCATGCTCTCCCCATTCTTCATAGAATTCATAACC
ATGATCATGATGTTGGTGACCGTGATGATGATTGTCGTGTTCGTGATGAC
CGTGTTGGCCTTCGTGACCACCTTCGTCTCCGTGATGGCCACCACCCTCA
TGTCCACCGCCGAAATCCCTCTTGGCAGCATCATCAGTGTTGTCCTCAGT
ATCTGCGACATCGTCTGACGATTCTTCAGATGCTTCGGCGTCCTGATTAA
GAAAGATAGAAGATTTACAGTGTTTACAGTACactgtttttcattttcct
tgacaAGTCATAAGGGAAAGCAATACTTGAAAATGAGGCTAAAAAGGGGT
CCTTAC Run BLAST on NCBI transcript from alignment at scaffold_123:61441..65881- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047222 ID=TCONS_00047222|Name=TCONS_00047222|organism=Clytia hemisphaerica|type=transcript|length=4441bp|location=Sequence derived from alignment at scaffold_123:61441..65881- (Clytia hemisphaerica)
CTTACATTAGGTTGGTGATTGCGATAAATTTACAATTTCTTTGGGATCCT
TGATTTTTGTGCTTCGATAGATGAATCAGCGTGCCCTGGGAATCCCATGG
TTGTAAACCCTGGGTGTGTGACTGGATGTCCTAACATTGATCCTGTAGAT
GATGGTTCTTGAGAAAAAGCCATGTTTCGTTTGGTACCGGTGACATCTTT
CGTTGATTCAGCAGCTGGAATTCGTGAGCGTGCGAACTGTGTTAAAGGTG
CACCGTGGGGTGATGTGAATCCAGCCACGCCACCCATGCCGCCCATTCCG
TATCCGAGGCGATAATTGTCGCCACTTGCGTATCCGTAACCAACATGGAT
GGTTTGTTTTTTGGTTTGTCGTCTTGGGATAGCACTCTTCTTTGTATCTT
TAGAAGCAGTATCCTTGGTAGATTTGGATGCTGAGCTATCTTTGGATGTC
ACTTTCTTTTCTTTGAGTTTGGATCCAGGGACCTTATTCTTGATCCAAGG
CCATCCCCATCCCCAGAGTCCCGTACCGACTCCTGGATATCCGTGAAAGT
ATGGGAAACCGTATCCACCATTGTATCCAATGGGAACGCAGAATCGCTTG
GTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTTTCTCAACTTGATC
TTTACAATGGTAAGCTTGAAGATGAGCGCCACGACCGAAGCTAAATCCAA
CATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCATCTACCTCGGCAA
CCGCCTGCGTGATGGCCACAACCACCACATCCACCGCATCCACCACCGTG
ACCCTGACCGTGACCTTCTCCCCAAGAATGATGACCGTGACCACCCCACC
AGTCTCCCCACCATGGGTAGGCAGACCATGGACCATAGTTGGCATATGGA
TAGAACACGCCTTGTTTGGCTGCACCAGTCTCTGTGTTTTCTTCTTCAGG
AGTAGGAATATCAGCTCTGGCGTAACATCTGTTGTGTCCGAATTTGTGTG
CACTGGTATCGCAATCAATGTAGACGTGAGCTGGTCGATGAACAACAGGT
AAGTACAATGGATGATGGCGAACACTCTTGCACAGACATCGTGATCCACC
GCTTGGTAGATCGTGGCATTTATGACAAACACGGTAGTTGTCGAATTTGC
GTACTGGCCATCCGGAATGTCCATATACACCGTAATTGTTCAAGCCACCA
CCAAGAGCGAAACCAGGGCCGCAACCGCAACCACCGGCATTGCATCCACA
ACCTCCGACAGCGCCACCAAGGCCAAACCCACCAGATCCTGCACCATATC
CACCACCCAATCCACCGTATCCACCACCGAGTCCACCATATCCACCACCG
AGTCCTCCGTATCCACCACCGAGTCNTCCAGGGACCTTATTCTTGATCCA
AGGCCATCCCCATCCCCATAGTCCCGTACCGACTCCTGGATATCCGTGAA
AGTATGGGAAACCGTATCCACCATTGTATCCAATGGGAACGCAGAATCGC
TTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTTTCTCAACTTG
ATCTTTACAATGATAAGCTTGAAGATGAGCGCCATGACCGAAGCTAAATC
CAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCATCTACCTCGG
CAACCGCCTGCGTGATTACCGCAACCATCACATCCACCGCATCCACCACC
GTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTTCTCCAAAAGCGT
GATGACCGTGACCACCCCACCAGTCTCCCCACCATGGGTAGGCAGACCAT
GGACCATAGTTGGCATATGGATAGAACACGCCTTGTTTGGCTGCACCAGT
CTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTCTGGCGTAACATC
TGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCAATGTAGACGTGA
GCTGGTCGATGAACAACAGGTAAGTACAATGGATGATGACGAACACTCTT
GCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGCATTTATGACAAA
CACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAATGTCCATATACA
CCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGGGCCGCAACCGCA
ACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCAAGGCCAAACC
CACCAGATCCTGCACCATATCCACCACCCAATCCACCGTATCCACCACCG
AGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCACCGAGTCCTCC
GAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAAGGATAAAATC
GTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACGGCCATGTCCA
CAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAATAACGGAACGA
ATGCGTGTTATGANATAAGCTTGAAGATGGGCGCCATGACCGAAGCTAAA
TCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCATCTACCTC
GGCAACCGCCTGCGTGATTACCGCAACCATCACATCCACCGCATCCACCA
CCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTTCTCCAAAAGC
GTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGGTAGGCAGACC
ATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTTGGCTGCACCA
GTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTCTGGCGTAACA
TCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCAATGTAGACGT
GAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATGACGAACACTC
TTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGCATTTATGACA
AACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAATGTCCATATA
CACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGGGCCGCAACCG
CAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCAAGGCCAAA
CCCACCAGATCCTGCACCATATCCACCACCCAATCCACCGTATCCACCAC
CGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCACCGAGTCCT
CCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAAGGATAAAA
TCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACGGCCATGTC
CACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAATAACGGAAC
GAATGCGTGTTATGATCCCAGTCAGACCAATCATCCCCGAAATGGTCATA
TCCGAAACTCCATGGGCCTTGGATGCGATGATCATGGTTATCATGCCCTG
AACCATGATCACTAAAATGGTACCCACCGTGTCCAGTTGTTCCCAAATGG
CATCCACATCTCTTGGTGACCTTTGGATCTTTGGATTTGCAACAGTCAGG
GATTTTGCTCTTGTAGTGACCACCAACGTGTCCACCACAACCACCGTGTC
CACATCCACCATGGCCGTTTCCGCCATATCCATGACCTCCATAGCCACCA
TATCCTCCTCCGCAGCCACCATGACCGCAACCACCGCCATTTCCTCCGTA
GCCTCCGTTGCCGCCACCGTATCCACCCAAACCGCCGCCATAACCGCCAC
CGTATCCACCCAAACCACCGCCATAGCCGCCACCGTAGCCACCACCGTGA
CCGCCGTGTAAGCCATGGTGACCCCATTGCCAGCCACCACCATCACCAAT
AGCGTGAGGGTGTCCCCAGTGGGAGTGACCCCAACCTCCCCAGTGATCTC
CAACTAACCACCATTTCTTGGAAGCATCTTCACCGTCAGTGGCATCTTCA
GCTTTTTGAGGGGTAGCAGTTTTGGTTTTGGTTTTGTCAACTTTCTCACG
TTTGTATCCGCCGCCGCCACCGTGGTGACCACCGTGATGATGTCCGTGCT
CACCGTGATGTCCTCCTTCGTGGTGTCCATGATGTTCACCTTCATGACCA
CCATGCTCTCCCCATTCTTCATAGAATTCATAACCATGATCATGATGTTG
GTGACCGTGATGATGATTGTCGTGTTCGTGATGACCGTGTTGGCCTTCGT
GACCACCTTCGTCTCCGTGATGGCCACCACCCTCATGTCCACCGCCGAAA
TCCCTCTTGGCAGCATCATCAGTGTTGTCCTCAGTATCTGCGACATCGTC
TGACGATTCTTCAGATGCTTCGGCGTCCTGATTAAGAAAGATAGAAGATT
TACAGTGTTTACAGTACACTGTTTTTCATTTTCCTTGACAAGTCATAAGG
GAAAGCAATACTTGAAAATGAGGCTAAAAAGGGGTCCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047222-exon-scaffold_123-1575043694:65265..65881 | TCONS_00047222-exon-scaffold_123-1575043694:65265..65881 | Clytia hemisphaerica | exon |
| TCONS_00047222-exon-scaffold_123-1575043694:61441..64479 | TCONS_00047222-exon-scaffold_123-1575043694:61441..64479 | Clytia hemisphaerica | exon |
| TCONS_00047222-exon-scaffold_123-1510915933:65265..65881 | TCONS_00047222-exon-scaffold_123-1510915933:65265..65881 | Clytia hemisphaerica | exon |
| TCONS_00047222-exon-scaffold_123-1510915933:61441..64479 | TCONS_00047222-exon-scaffold_123-1510915933:61441..64479 | Clytia hemisphaerica | exon |
| TCONS_00047222-exon-scaffold_123-1491911889:65265..65881 | TCONS_00047222-exon-scaffold_123-1491911889:65265..65881 | Clytia hemisphaerica | exon |
| TCONS_00047222-exon-scaffold_123-1491911889:61441..64479 | TCONS_00047222-exon-scaffold_123-1491911889:61441..64479 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:61441..65881 - |
Blast
The following BLAST results are available for this feature:
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