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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047229 ID=TCONS_00047229|Name=TCONS_00047229|organism=Clytia hemisphaerica|type=transcript|length=921bp
GACCGTTTTCATATCGAAGGAAATCATAAAGAAGCTATCGAGAGATTGAG
AGAAGAATGAAGTCTTTAATCATACTCGTGCTGACGGCAATTTTGCCGAA
TCTTTTGAAAGCATCGACAACCACTGACGATATTAGTCTACTCAAATCAC
AAGTTAAAGCTCTGTCGAAACAGATCGCTGAAACCAACCAGAAGCTGGCC
CATGTCACGCAAGAGAATCGTTATTTGACCATGAAAGATCAAGTGCAAAA
TGGAGTTTGTCATTTCAGTACAAATCCATGCGAACCGTGTTTTTGCGTTG
AAGATTACAGCATGGTGGAAAAGTACTATTGTGATTGCCGAGCTCAGCCC
ATCAGACGTGACTGCAAGGAGCATTATGACCAAGGTGAGCGAATAAGCGG
ACTGTATGTCATTAATAAGAACGCTTATTCATTGGCTGTTCAAGTGTATT
GTGATCACGTGACAGATGGTGGTGGCTGGACCGTCTTCCAGAGACGCGTC
GACGGGTCCGAAAACTTTTATCGGAATTGGACGGAATATGAAATCGGATT
TGGACGCCTCAATCGGGAATTCTGGCTTGGTAATGAGAACTTATATCGTT
TAACAGCTCAAGCTTTTATGAAAGGTTCCGAAGTTCGATTTGACATGCAA
AAGAGGGGAAGTAGTTCTTTGACGTGGGCAAAATATTCCAATTTTGAATT
AACCAGTAAATCTACAGGATACGAATTACACATATCGGGATATTCGGGAA
ATGCTGGTGATCACATGACTTATCATAATGGAGCAAAATTTTCCACCTAT
GATAGGGACCTTGACAACCAGCCCTCTGTTGATTGTGCTACTCGTCATAG
AGGGGCATTTTGGTACAAAAGCTGTCATTGGGTCAACATCAATGGGTATT
ATGATGAGTTCAAAGAATTTC Run BLAST on NCBI protein sequence of TCONS_00047229-protein >TCONS_00047229-protein ID=TCONS_00047229-protein|Name=TCONS_00047229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MKSLIILVLTAILPNLLKASTTTDDISLLKSQVKALSKQIAETNQKLAHV
TQENRYLTMKDQVQNGVCHFSTNPCEPCFCVEDYSMVEKYYCDCRAQPIR
RDCKEHYDQGERISGLYVINKNAYSLAVQVYCDHVTDGGGWTVFQRRVDG
SENFYRNWTEYEIGFGRLNREFWLGNENLYRLTAQAFMKGSEVRFDMQKR
GSSSLTWAKYSNFELTSKSTGYELHISGYSGNAGDHMTYHNGAKFSTYDR
DLDNQPSVDCATRHRGAFWYKSCHWVNINGYYDEFKEF Run BLAST on NCBI transcript from alignment at scaffold_123:131500..133437- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047229 ID=TCONS_00047229|Name=TCONS_00047229|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at scaffold_123:131500..133437- (Clytia hemisphaerica)
GACCGTTTTCATATCGAAGGAAATCATAAAGAAGCTATCGAGAGATTGAG
AGAAGAATGAAGTCTTTAATCATACTCGTGCTGACGGCAATTTTGCCGAA
TCTTTTGAAAGCATCGACAACCACTGACGATATTAGTCTACTCAAATCAC
AAGTTAAAGCTCTGTCGAAACAGATCGCTGAAACCAACCAGAAGCTGGCC
CATGTCACGCAAGAGAATCGTTATTTGACCATGAAAGATCAAGTGCAAAA
TGGAGTTTGTCATTTCAGTACAAATCCATGCGAACCGTGTTTTTGCGTTG
AAGATTACAGCATGGTGGAAAAGTACTATTGTGATTGCCGAGCTCAGCCC
ATCAGACGTGACTGCAAGGAGCATTATGACCAAGGTGAGCGAATAAGCGG
ACTGTATGTCATTAATAAGAACGCTTATTCATTGGCTGTTCAAGTGTATT
GTGATCACGTGACAGATGGTGGTGGCTGGACCGTCTTCCAGAGACGCGTC
GACGGGTCCGAAAACTTTTATCGGAATTGGACGGAATATGAAATCGGATT
TGGACGCCTCAATCGGGAATTCTGGCTTGGTAATGAGAACTTATATCGTT
TAACAGCTCAAGCTTTTATGAAAGGTTCCGAAGTTCGATTTGACATGCAA
AAGAGGGGAAGTAGTTCTTTGACGTGGGCAAAATATTCCAATTTTGAATT
AACCAGTAAATCTACAGGATACGAATTACACATATCGGGATATTCGGGAA
ATGCTGGTGATCACATGACTTATCATAATGGAGCAAAATTTTCCACCTAT
GATAGGGGTGCAGCGTCTGGGTGCGCCTCTTTTCATAAAGGAGCATTTTG
GTTCGTAAAATGTCACCGTGTAAATGTAAATGGCGCTTATGATAAGTTTG
CATTACTTCCAATCGCGGATTCTATTACATGGGGTGTTATTTATCGATTG
AGATTTTCCGAAATCAAAATACGCCGGAAGTGAATATTCATCAATTTCAT
TTCATACATGTATTAATTGTAATAATTATATGGTTGATTACATTTAGTTT
AGATTTGTAAGGGACGAGCGGGGCGATAAATCCGTACTAACCCCGCTTTT
TTGTAATCGCCCTGATGTAAACAAGAATTTCTATTGGTTGAAAAGTAACG
TACGATATCTTCAGAGCATTTTGATTGGTTGACAAAATATCGCACACAAT
TTTTAAGCAAATCTAGATAAGAGTGTCAATCAAATGTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGGA
CAAAAGGTTGTAGACAAATGAAATTTCAGTGAAAAATGATGAGAAATAGA
GCAAAATGACTCTTCAATGTGTCTGAAAGGGGATGGAAGTTAAGAATAAC
ACTTTTGAAGTCGTTGCATTGCTTTTGAATTGCTTTTGAGGGAACCACAA
GCAAAAAAGCCCTTGTGGTTTGCCCTTGCGGTTAGACTGCAGTGGGTGAC
TTTCAAAGACTTCTTATGATAAAGACCTTGACAACCAGCCCTCTGTTGAT
TGTGCTACTCGTCATAGAGGGGCATTTTGGTACAAAAGCTGTCATTGGGT
CAACATCAATGGGTATTATGATGAGTTCAAAGAATTTC Coding sequence (CDS) from alignment at scaffold_123:131500..133437- >TCONS_00047229 ID=TCONS_00047229|Name=TCONS_00047229|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_123:131500..133437- (Clytia hemisphaerica)
ACCTTGACAACCAGCCCTCTGTTGATTGTGCTACTCGTCATAGAGGGGCA
TTTTGGTACAAAAGCTGTCATTGGGTCAACATCAATGGGTATTATGATGA
GTTCAAAGAATTTATGAAGTCTTTAATCATACTCGTGCTGACGGCAATTT
TGCCGAATCTTTTGAAAGCATCGACAACCACTGACGATATTAGTCTACTC
AAATCACAAGTTAAAGCTCTGTCGAAACAGATCGCTGAAACCAACCAGAA
GCTGGCCCATGTCACGCAAGAGAATCGTTATTTGACCATGAAAGATCAAG
TGCAAAATGGAGTTTGTCATTTCAGTACAAATCCATGCGAACCGTGTTTT
TGCGTTGAAGATTACAGCATGGTGGAAAAGTACTATTGTGATTGCCGAGC
TCAGCCCATCAGACGTGACTGCAAGGAGCATTATGACCAAGGTGAGCGAA
TAAGCGGACTGTATGTCATTAATAAGAACGCTTATTCATTGGCTGTTCAA
GTGTATTGTGATCACGTGACAGATGGTGGTGGCTGGACCGTCTTCCAGAG
ACGCGTCGACGGGTCCGAAAACTTTTATCGGAATTGGACGGAATATGAAA
TCGGATTTGGACGCCTCAATCGGGAATTCTGGCTTGGTAATGAGAACTTA
TATCGTTTAACAGCTCAAGCTTTTATGAAAGGTTCCGAAGTTCGATTTGA
CATGCAAAAGAGGGGAAGTAGTTCTTTGACGTGGGCAAAATATTCCAATT
TTGAATTAACCAGTAAATCTACAGGATACGAATTACACATATCGGGATAT
TCGGGAAATGCTGGTGATCACATGACTTATCATAATGGAGCAAAATTTTC
CACCTATGATAGGGACCTTGACAACCAGCCCTCTGTTGATTGTGCTACTC
GTCATAGAGGGGCATTTTGGTACAAAAGCTGTCATTGGGTCAACATCAAT
GGGTATTATGATGAGTTCAAAGAATTTATGAAGTCTTTAATCATACTCGT
GCTGACGGCAATTTTGCCGAATCTTTTGAAAGCATCGACAACCACTGACG
ATATTAGTCTACTCAAATCACAAGTTAAAGCTCTGTCGAAACAGATCGCT
GAAACCAACCAGAAGCTGGCCCATGTCACGCAAGAGAATCGTTATTTGAC
CATGAAAGATCAAGTGCAAAATGGAGTTTGTCATTTCAGTACAAATCCAT
GCGAACCGTGTTTTTGCGTTGAAGATTACAGCATGGTGGAAAAGTACTAT
TGTGATTGCCGAGCTCAGCCCATCAGACGTGACTGCAAGGAGCATTATGA
CCAAGGTGAGCGAATAAGCGGACTGTATGTCATTAATAAGAACGCTTATT
CATTGGCTGTTCAAGTGTATTGTGATCACGTGACAGATGGTGGTGGCTGG
ACCGTCTTCCAGAGACGCGTCGACGGGTCCGAAAACTTTTATCGGAATTG
GACGGAATATGAAATCGGATTTGGACGCCTCAATCGGGAATTCTGGCTTG
GTAATGAGAACTTATATCGTTTAACAGCTCAAGCTTTTATGAAAGGTTCC
GAAGTTCGATTTGACATGCAAAAGAGGGGAAGTAGTTCTTTGACGTGGGC
AAAATATTCCAATTTTGAATTAACCAGTAAATCTACAGGATACGAATTAC
ACATATCGGGATATTCGGGAAATGCTGGTGATCACATGACTTATCATAAT
GGAGCAAAATTTTCCACCTATGATAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047229-exon-scaffold_123-1575043694:132631..133437 | TCONS_00047229-exon-scaffold_123-1575043694:132631..133437 | Clytia hemisphaerica | exon |
| TCONS_00047229-exon-scaffold_123-1575043694:131500..131613 | TCONS_00047229-exon-scaffold_123-1575043694:131500..131613 | Clytia hemisphaerica | exon |
| TCONS_00047229-exon-scaffold_123-1510915933:132631..133437 | TCONS_00047229-exon-scaffold_123-1510915933:132631..133437 | Clytia hemisphaerica | exon |
| TCONS_00047229-exon-scaffold_123-1510915933:131500..131613 | TCONS_00047229-exon-scaffold_123-1510915933:131500..131613 | Clytia hemisphaerica | exon |
| TCONS_00047229-exon-scaffold_123-1491911889:132631..133437 | TCONS_00047229-exon-scaffold_123-1491911889:132631..133437 | Clytia hemisphaerica | exon |
| TCONS_00047229-exon-scaffold_123-1491911889:131500..131613 | TCONS_00047229-exon-scaffold_123-1491911889:131500..131613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:131500..133437 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047229 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 2.283e-49 Identity = 87/218 (39.91%), Postives = 137/218 (62.84%), Query Frame = 3
Query: 267 STNPCEPCFCVEDYSMVEKYYCDCRAQPIRRDCKEHYDQGERISGLYVINKNAYSLAVQVYCDHVTDGGGWTVFQRRVDGSENFYRNWTEYEIGFGRLNREFWLGNENLYRLTAQAFMKGSEVRFDMQKRGSSSLTWAKYSNFELTSKST-----GYELHISGY-SGNAGDHMTYHNGAKFSTYDRDLDNQPSVDCATRHRGAFWYKSCHWVNINGYY 902
ST PC P +E++ C QP+ DC + Y QG + G+Y+I + S+ V V+CD T+GG WTVFQ+R +GS +F+R W +Y++GFGR + E+WLG +N++ LT + + E+R D++ ++ +AKY++F ++ + GY L ++G+ G AGD ++YH+G KFST+DRD D +CA GAFW++SCH+ N+NG+Y
Sbjct: 14 STPPCAPQVSGIRGDALERF---CLQQPL--DCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLK---QKYELRVDLEDF-ENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQ-NCAALSSGAFWFRSCHFANLNGFY 221
The following BLAST results are available for this feature:
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