TCONS_00047230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047230
Unique NameTCONS_00047230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047230 ID=TCONS_00047230|Name=TCONS_00047230|organism=Clytia hemisphaerica|type=transcript|length=1193bp
GACCGTTTTCATATCGAAGGAAATCATAAAGAAGCTATCGAGAGATTGAG
AGAAGAATGAAGTCTTTAATCATACTCGTGCTGACGGCAATTTTGCCGAA
TCTTTTGAAAGCATCGACAACCACTGACGATATTAGTCTACTCAAATCAC
AAGTTAAAGCTCTGTCGAAACAGATCGCTGAAACCAACCAGAAGCTGGCC
CATGTCACGCAAGAGAATCGTTATTTGACCATGAAAGATCAAGTGCAAAA
TGGAGTTTGTCATTTCAGTACAAATCCATGCGAACCGTGTTTTTGCGTTG
AAGATTACAGCATGGTGGAAAAGTACTATTGTGATTGCCGAGCTCAGCCC
ATCAGACGTGACTGCAAGGAGCATTATGACCAAGGTGAGCGAATAAGCGG
ACTGTATGTCATTAATAAGAACGCTTATTCATTGGCTGTTCAAGTGTATT
GTGATCACGTGACAGATGGTGGTGGCTGGACCGTCTTCCAGAGACGCGTC
GACGGGTCCGAAAACTTTTATCGGAATTGGACGGAATATGAAATCGGATT
TGGACGCCTCAATCGGGAATTCTGGCTTGGTAATGAGAACTTATATCGTT
TAACAGCTCAAGCTTTTATGAAAGGTTCCGAAGTTCGATTTGACATGCAA
AAGAGGGGAAGTAGTTCTTTGACGTGGGCAAAATATTCCAATTTTGAATT
AACCAGTAAATCTACAGGATACGAATTACACATATCGGGATATTCGGGAA
ATGCTGGTGATCACATGACTTATCATAATGGAGCAAAATTTTCCACCTAT
GATAGGGGTGCAGCGTCTGGGTGCGCCTCTTTTCATAAAGGAGCATTTTG
GTTCGTAAAATGTCACCGTGTAAATGTAAATGGCGCTTATGATAAGTTTG
CATTACTTCCAATCGCGGATTCTATTACATGGGGTGTTATTTATCGATTG
AGATTTTCCGAAATCAAAATACGCCGGAAGTGAATATtcatcaatttcat
ttcatacaTGTATTAATTGTaataattatatggttgattacatttagttT
AGATTTGTAAgggacgagcggggcgataaatccgtactaaccccgctttt
ttgtaatcgccctgatgtaaacaagaatttctattggttgaaaagtaACG
TACGATATCTTCAgagcattttgattggttgacaAAATATCGC
Run BLAST on NCBI

transcript from alignment at scaffold_123:132245..133437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047230 ID=TCONS_00047230|Name=TCONS_00047230|organism=Clytia hemisphaerica|type=transcript|length=1193bp|location=Sequence derived from alignment at scaffold_123:132245..133437- (Clytia hemisphaerica)
GACCGTTTTCATATCGAAGGAAATCATAAAGAAGCTATCGAGAGATTGAG
AGAAGAATGAAGTCTTTAATCATACTCGTGCTGACGGCAATTTTGCCGAA
TCTTTTGAAAGCATCGACAACCACTGACGATATTAGTCTACTCAAATCAC
AAGTTAAAGCTCTGTCGAAACAGATCGCTGAAACCAACCAGAAGCTGGCC
CATGTCACGCAAGAGAATCGTTATTTGACCATGAAAGATCAAGTGCAAAA
TGGAGTTTGTCATTTCAGTACAAATCCATGCGAACCGTGTTTTTGCGTTG
AAGATTACAGCATGGTGGAAAAGTACTATTGTGATTGCCGAGCTCAGCCC
ATCAGACGTGACTGCAAGGAGCATTATGACCAAGGTGAGCGAATAAGCGG
ACTGTATGTCATTAATAAGAACGCTTATTCATTGGCTGTTCAAGTGTATT
GTGATCACGTGACAGATGGTGGTGGCTGGACCGTCTTCCAGAGACGCGTC
GACGGGTCCGAAAACTTTTATCGGAATTGGACGGAATATGAAATCGGATT
TGGACGCCTCAATCGGGAATTCTGGCTTGGTAATGAGAACTTATATCGTT
TAACAGCTCAAGCTTTTATGAAAGGTTCCGAAGTTCGATTTGACATGCAA
AAGAGGGGAAGTAGTTCTTTGACGTGGGCAAAATATTCCAATTTTGAATT
AACCAGTAAATCTACAGGATACGAATTACACATATCGGGATATTCGGGAA
ATGCTGGTGATCACATGACTTATCATAATGGAGCAAAATTTTCCACCTAT
GATAGGGGTGCAGCGTCTGGGTGCGCCTCTTTTCATAAAGGAGCATTTTG
GTTCGTAAAATGTCACCGTGTAAATGTAAATGGCGCTTATGATAAGTTTG
CATTACTTCCAATCGCGGATTCTATTACATGGGGTGTTATTTATCGATTG
AGATTTTCCGAAATCAAAATACGCCGGAAGTGAATATTCATCAATTTCAT
TTCATACATGTATTAATTGTAATAATTATATGGTTGATTACATTTAGTTT
AGATTTGTAAGGGACGAGCGGGGCGATAAATCCGTACTAACCCCGCTTTT
TTGTAATCGCCCTGATGTAAACAAGAATTTCTATTGGTTGAAAAGTAACG
TACGATATCTTCAGAGCATTTTGATTGGTTGACAAAATATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030084XLOC_030084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047230-exon-scaffold_123-1575043694:132245..133437TCONS_00047230-exon-scaffold_123-1575043694:132245..133437Clytia hemisphaericaexon
TCONS_00047230-exon-scaffold_123-1510915933:132245..133437TCONS_00047230-exon-scaffold_123-1510915933:132245..133437Clytia hemisphaericaexon
TCONS_00047230-exon-scaffold_123-1491911889:132245..133437TCONS_00047230-exon-scaffold_123-1491911889:132245..133437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:132245..133437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02977	0.720638	1.89271	2.1037	0.87519	0.345793	0.973432	0.650939	0.607651	0.827941	0.547922	0.576292	2.91866	0.990962	4.29572	7.60742	1.3533	1.35153	7.18622	8.34525	1.98681	2.00748	4.78566	3.75978	4.89905	5.59968	0.939323	0.952705	2.48898	2.08083
Blast
[Close]
BLAST of TCONS_00047230 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 4.714e-48
Identity = 93/245 (37.96%), Postives = 143/245 (58.37%), Query Frame = 3 
Query:  267 STNPCEPCFCVEDYSMVEKYYCDCRAQPIRRDCKEHYDQGERISGLYVINKNAYSLAVQVYCDHVTDGGGWTVFQRRVDGSENFYRNWTEYEIGFGRLNREFWLGNENLYRLTAQAFMKGSEVRFDMQKRGSSSLTWAKYSNFELTSKST-----GYELHISGY-SGNAGDHMTYHNGAKFSTYDRGA---ASGCASFHKGAFWFVKCHRVNVNGAYDKFALLPIADSITW----GVIYRLRFSE 962
            ST PC P         +E++   C  QP+  DC + Y QG +  G+Y+I  +  S+ V V+CD  T+GG WTVFQ+R +GS +F+R W +Y++GFGR + E+WLG +N++ LT +   +  E+R D++    ++  +AKY++F ++  +      GY L ++G+  G AGD ++YH+G KFST+DR        CA+   GAFWF  CH  N+NG Y   + L  A+ I W    G  Y L+ +E
Sbjct:   14 STPPCAPQVSGIRGDALERF---CLQQPL--DCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLK---QKYELRVDLEDF-ENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTE 249
The following BLAST results are available for this feature:
BLAST of TCONS_00047230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFAP44.714e-4837.96Microfibril-associated glycoprotein 4 OS=Homo sapi... [more]
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