TCONS_00047233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047233
Unique NameTCONS_00047233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047233 ID=TCONS_00047233|Name=TCONS_00047233|organism=Clytia hemisphaerica|type=transcript|length=545bp
ctttcattctctagggagaccaagctctataatttaagaactttgtatgt
tgaggtaaattttgttttttcttaaattttgagcttggatatccaggcta
ctttTGGCATTGCGAGCCTCAATACTCCTATtaaattgttctataaacag
TAAGTCAATATGTAACTAATAAATAGATTATAAAATTGGAGATCAGTTTA
GTGCACAAAAAAACACTGCAGAAAATTGAACTTCGTTGCTTAAAATCCGG
ATTGAAATCAGGAAATGATAGCAATGTGAATTCAATTTcctgcaatattt
ttatttctcacaaaaaaatgacaaaaagatgCAGAAAAACTTACCATTTC
TGTGCTGTGTGTGCAAAAAAAGGTTTCGAAGTTGTTATGTAATATATGTG
TGAAGATTTATTTTCCGTGTTATGCACTCCTTGTAGAAGACTTTGATTTT
CTTGTTTAACTGTCTTGTGGAAGCCACAtcaatctttttatttcattttt
ttcgaaCATCAAGATCCAGAGAATTCATTTGAGAAAACTCCACAA
Run BLAST on NCBI

transcript from alignment at scaffold_123:306064..306721-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047233 ID=TCONS_00047233|Name=TCONS_00047233|organism=Clytia hemisphaerica|type=transcript|length=658bp|location=Sequence derived from alignment at scaffold_123:306064..306721- (Clytia hemisphaerica)
CTTTCATTCTCTAGGGAGACCAAGCTCTATAATTTAAGAACTTTGTATGT
TGAGGTAAATTTTGTTTTTTCTTAAATTTTGAGCTTGGATATCCAGGCTA
CTTTTGGCATTGCGAGCCTCAATACTCCTATTAAATTGTTCTATAAACAG
TAAGTCAATATGTAACTAATAAATAGATTATAAAATTGGAGATCAGTTTA
GTGCACAAAAAAACACTGCAGAAAATTGAACTTCGTTGCTTAAAATCCGG
ATTGAAATCAGGAAATGATAGCAATGTGAATTCAATTTCCTGCAATATTT
TTATTTCTCACAAAAAAATGACAAAAAGATGCAGAAAAACTTACCATTTC
TGTGCTGTGTGTGCAAAAAAAGGTTTAGAAGTTGTTATGTAATATATGTG
TGAAGATTTATTTTCCGTGTTATGCACTCCTTGTAGAAGACTCTGATTCT
CTTGNTACCATTTCTGTGCTGTGTGTGCAAAAAAGGTTTCGAAGTTGTTA
TGTAATATATGTGTGAAGATTTATTTTCCGTGTTATGCACTCCTTGTAGA
AGACTTTGATTTTCTTGTTTAACTGTCTTGTGGAAGCCACATCAATCTTT
TTATTTCATTTTTTTCGAACATCAAGATCCAGAGAATTCATTTGAGAAAA
CTCCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030086XLOC_030086Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047233-exon-scaffold_123-1575043694:306350..306721TCONS_00047233-exon-scaffold_123-1575043694:306350..306721Clytia hemisphaericaexon
TCONS_00047233-exon-scaffold_123-1575043694:306064..306236TCONS_00047233-exon-scaffold_123-1575043694:306064..306236Clytia hemisphaericaexon
TCONS_00047233-exon-scaffold_123-1510915933:306350..306721TCONS_00047233-exon-scaffold_123-1510915933:306350..306721Clytia hemisphaericaexon
TCONS_00047233-exon-scaffold_123-1510915933:306064..306236TCONS_00047233-exon-scaffold_123-1510915933:306064..306236Clytia hemisphaericaexon
TCONS_00047233-exon-scaffold_123-1491911889:306350..306721TCONS_00047233-exon-scaffold_123-1491911889:306350..306721Clytia hemisphaericaexon
TCONS_00047233-exon-scaffold_123-1491911889:306064..306236TCONS_00047233-exon-scaffold_123-1491911889:306064..306236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:306064..306721 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.560849	1.74068	2.0645	1.09992	0.302747	0	0.462294	0.138076	0.65303	0	0	0.214038	0.16929	0	0.0925014	0.166257	0	0.12887	0	0	0	0.352954	0.248536	0.765742	0.113366	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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