TCONS_00047234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047234
Unique NameTCONS_00047234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047234 ID=TCONS_00047234|Name=TCONS_00047234|organism=Clytia hemisphaerica|type=transcript|length=2107bp
gttttttaaaaaaattactttttacgACTGAAaacattttgggaattttg
cTTTGAAACTTGCCTAAAGACTTTCTTTCAAATCTAAAAGAAATGTAAAG
TTTTACTTGGAATGAAAGTTATCAATTTGGAATAGTTTTGGAACGTGTCA
TGTCTGAGGCTGGAGGGACTACCAATGAAGTGAATGAGCTGAACAACTCT
CTGCTAGAGGAAAACAAAGATAAGTCAAAAACAGTCAGCGTCAGCAACAA
AAAAGAGGAGGTTGATGATTTATCACCATCCTCTTCAGATAATATAAAGA
AACAAGTACCTGAAAGCAACAATATCAAGACTAGCAATGGATCAATACCA
AAGGATAAGgtAGCACTGAAACTGATTCTCGCAAGTGGCAAATCAGCTGA
GTTTATTTTTCCACATTTTGCATCAGTTGGAAAAGTCACAGAATTTGTTT
ACAAGAATTGGCCAGAAGaatggGCTGACGAGAAAGACTCTATTACAAGT
CATCATGTTCTACGCCTGATTTATCAAGGACGTTTTCTTCATGAGAATGT
TACATTTGTTGCTTTGAACTTAACTCCTGGAAAAAGGACAGTCATGCACT
TGGTACCAAGGGAAAAATTACCACAACTATCACCAGATGATATAGAGAAG
AGCCCAAAAACGAGTGAGAGAAGTTGCTGctgtaatataatataatatgt
aATCACCACACTGTTGCAGAGAGAGGAAAAAGAGTAATTTGTGGGTGGAC
ATATGACATGCGAATCTGTGTGAGATTAGCGTCTTATAGAGAATTGACGG
ATACGTTTTAATAGCTCCAGAATATTCTCTAAGACGAGAAATACATAGAC
ATAGAGGGAGTGCTTAGGATAGATTACTCCAAAAGAAATCTGATTTAAAA
AGTTTGTTAGTCTTTTACAATTAACCTTGTATATCAGTCTTCGAGTTCTT
CCTTTTATTAAAAATCGTAAACATTAATGAACATCCATAATTCACCCTGN
TTtttaggccccccccccccccgtttattaattttaagaatattttcagt
tgtcaaagagaaggcctcttattttgctctaaatggcctgattttagcct
atatttaccttatttcgGGTTTTCAGATGTACCATTTTCAACCCCCGGCA
ATTAGCCCCCCCCTGTTTAttgaaatctcgaaaattttccgacctccctc
ccccctgtttatttggaCCCTAAGAGTATCCTTGTTTAATAACTGcactt
tcataaaaatcatcTTCATAATGAACTTAAAGAGTGAATTCGAGTGGTCG
AGAGAGAGACGtagaattttattgtttattaaaCATTTTGTACAtatgaa
ataattatttttttttcgtcttttttgcaaatattttattattattatta
tattcgTTGTCATTTTACAAATTATTATTTTGGTCACACTTTCATCAAAG
ATATTCTTTGGCCATGCTCGAGTTTGATGTCGCTCTCTGGAATCCTGCCA
ATTAAAACTTTTTGCATTGAGTttagaatcttcaacctttctcgaGTAAG
AAAAAGTGGAGCGTTGAGATTTACGCTGCTCTtagaatgacggattgaat
ccatctctttcttttttttaagcggcattttttttcaacaaaccAGGCGG
GTCACGCGTTTTAGATGGGAAATGAGTGGCTTCATTTTTCGTCCAAGAGT
TTCAAATCTAGCCCTCAAATTCACCATGAGCTATTTTGTTTGGGTGTCAT
TATAAATGTTTTAAAACATTATTCTGGTGTCATCACATGTCAAAAGATTG
CTTTTTAATTGGGGATACAAGCATAACATATTTGATCCTTGAAAACAATG
CTAGGAGAATCCAAAGGGTAGTAAACTTTGTCCAGTACTGGCTTTTCGAG
GATTTCTTACGTAGACTTTTCTGAATATTTCTCATGGAATTCTTTATTTG
TTATTATACaaaagtgtttctttttattttcatagcAGATTGTGTATTAG
CTTTAAGACAATTTTTTATTGTAGTTATAACTAGAGACTGGTTGTATTTT
GAATAATAACATTAATACTGGTTGCAAGCACTTTTATTTTGTCTAGTTTT
CTGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00047234-protein

>TCONS_00047234-protein ID=TCONS_00047234-protein|Name=TCONS_00047234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MSEAGGTTNEVNELNNSLLEENKDKSKTVSVSNKKEEVDDLSPSSSDNIK
KQVPESNNIKTSNGSIPKDKVALKLILASGKSAEFIFPHFASVGKVTEFV
YKNWPEEWADEKDSITSHHVLRLIYQGRFLHENVTFVALNLTPGKRTVMH
LVPREKLPQLSPDDIEKSPKTSERSCCCNII
Run BLAST on NCBI

transcript from alignment at scaffold_123:315521..323041-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047234 ID=TCONS_00047234|Name=TCONS_00047234|organism=Clytia hemisphaerica|type=transcript|length=7521bp|location=Sequence derived from alignment at scaffold_123:315521..323041- (Clytia hemisphaerica)
GTTTTTTAAAAAAATTACTTTTTACGACTGAAAACATTTTGGGAATTTTG
CTTTGAAACTTGCCTAAAGACTTTCTTTCAAATCTAAAAGAAATGTAAAG
TTTTACTTGGAATGAAAGTTATCAATTTGGAATAGTTTTGGAACGTGTCA
TGTCTGAGGCTGGAGGGACTACCAATGAAGTGAATGAGCTGAACAACTCT
CTGCTAGAGGAAAACAAAGATAAGTCAAAAACAGTCAGCGTCAGCAACAA
AAAAGAGGAGGTTGATGATTTATCACCATCCTCTTCAGATAATATAAAGA
AACAAGTACCTGAAAGCAACAATATCAAGACTAGCAATGGATCAATACCA
AAGGATAAGGTATATGTTTGAGTACAAGCCGTCAGTTATGGCGCCCGAAA
AAACATACCCCAAACATTTCCCGTTCATCATGTTCTGGCCGAAATAGCAA
AACATTCTTTTAGCCAGAACATTAATGTCTAGACCAAGTGTTGGCCACCA
AATTTCAGATTTTTGCCTCTTGAAACTTGGCCTAACAGTCTATATATAAA
GCTTAAACTTCTGTATCAGGATTATAAACTAGGCTAGTCTTACGTTTTAT
CTTTCTCTTTACAACAATATAATGCTGACAAAGTCAGCATTAGGATCGAT
CATCGGAACGGCTCGATGACGGCTCGATATGTGATCGATGGATTACTTAA
CGATCCGGATCAGGAGATCGATAGAGGATCGATACTAAGTTTTTTTTAAG
CTTATGATTAGTTATCGATCTATCATCAATCTTTTATCGATATTATCGAC
CCTATCGACTCATACTCGATTTACAATCAATAACAAATCGATTAACGATC
GATGACGAATCGATTAACGATCGATGACGAATCAATATACTCAATTGAAA
TACTAGATCGATAATGGATCAATGAAGGATCAATACTCAAGACTTTTTAA
TGGCTGAATCTTCCATTGATCTCCCATCCGGATCGTTAAGTAATCCATCG
ATCGCATATCGATTCGTCATCGAGCCGTTCCGATGATCGATCCTATCAAG
CGTGGACGTCTGGTTTATAAAAATTTAACCTATTGTGAGGCATTCTGCGC
AATTTTTAAGGTCAGAAGTCCAAAATTGGTCAAAGCCCCCTTGGGGGTAC
GGTCATTGCTTCTTCATCACTCTTCTTCATAGTTTTTCTGACTTTCTGGT
TCTTTGTGAGTTTGTGAATGTTTTCTAACTTACTGAATGACTTACCGACA
GATCGCCACCGGTGGGATTCGAACCCACTAAATGCAAAGTTCGGATGTAG
TGAAACCCATTGCCTTATCCACTGTGCCACGGATTCATGCCAGGAATGAG
TTTCTGACGGCTATTTATATTGTACAAACTGCAGACCAGACTGTATTAAG
AGAAAATCACAAAAGAGTGCTTGTTTAACCCTAACTGATAATAACCCAAT
TCCTAGCTAATCTGATACATAACCACACCCAAACCACACCCATGCCCAAC
CCTACCAGGTTGCCTGCAGGTCCTGACACTATTCCCGCATGCCGGATCTG
AAAAATAGATACATGTCTTTCATCTTTATGAAGAAGCCTTCACCTGGGGG
TACTGATTCGCACTACAGGCAAAAATTAGAAAAAATGGCACTTTCTGGCC
TTTTCAGGCCTGTAAATATGTCATAACTATTGCAAATCTTATTTTTTTCA
TTTGCTGTACTAAATTTTATGAAGAAACAACAAAATAATCATATTGGGTT
GAAAATTGTGCCCCGTGGAGCTCTAAACAGGCTGTTTTAAGCCAATTTTG
GGTAGCAAAATGCTTTTTAAGGCCAAATTTGCAAGTCCATAAACTTTAAA
CTGATTACTTCACATATCTGAAATTTTTGTCTTCAACAAAGTCTTTAAGC
AAAATGAATTTCAAGTTTTCACTTTTTTTTTAAATTCATAATGGCGTCTT
CAAAAATTGCCTTTTAGCAAAAAAAAATCATATTCATCAAAAAATAGCAT
TTTTTAGGCAAGCTTCTACAAACTGAGTTTAAATACTGACTGAATTTTTT
TTTGCAGTGATAGTATTCTGGAGATACTCCAGGGAAATCAAAATCATTTG
GGTCTGGGATGCGTCTATGTCTGCCATTATGGAAATAAAATCCCTGCTAA
GAGCCATTGTTCAGGCAAAAACCCAAATTTGAACTAAAAAAATCTCTAAA
ATGACAATAGACATGGGTCCGAATTTTCTTGAGTGATAGTATTTTGGAAA
TAGTAGTATGATAGTAAGAGCCATTTTTCAATCAAAAATCTCTAAAATGA
CAATAGACACGAGCCCGAATTTTCTTGCAGTGATAGTATTCTGGAAATGC
TGCAGGAAAATCAAAGTCATCTGGGTTTGGGATTTGGGTATATCTTCCAT
TTAGGAGAAATTTCTGCTAAATAGCAATATTTCAAGCAAAAATCCATTTT
TGACTGGAAAAATCTTAAAAATGGCAATATCCTTGAATGAACCTAAAATC
TTTTTGCAGTGATAGCCCTATGGAAATACTCAAGGGAAATCAAAATTCTT
TGGGTTTAGGATAAGGGTATATCTGCTATTATGGAATTGAAATATGTGCT
AAAACTGGCTAAAATGCAACGTTTCAAGCAAAACCCCATTTTTGACTAAA
AACTGCTCTAAAATGGCAATAGACATGTACCCAAATTTCTTTGAAGTGAT
AGTATGATAGTAAGAGCCATTTTTCAATCAAAAATGTGATATTAACTTGG
GACTATCTGAGAAAACATGGGACGACAATTCAGCCACCATTTCACCGAAC
CTTCAAAGTCATTTGATTTAAGTTAATGAATGGCATATTGAAAAATACAC
GATTTCTCTTTCGCACCCAGTAGACTTTTAAATCGAAATATGAAAAAAAT
CTGTAGTGGAACACACGCAAGTGTCTGTGCACTCTCAGAGGAACAAAGAA
GTATGATTGATAAACTAGGTGGAGTTATCAAAACAAATTTGTTGTCAAAG
AGATTTTAACAGTAAGTGAAAATACAGACCAGATATCAACCAGAAATCGA
AAGTGAAACCACTAAAAATGAAAGTAAAATCAGCCCGCACTCCAAACCCC
GTAATCTTGATTTAGGAGTTTAAGCATAGGCTGCCTAAACGTGCACACTG
GCCAGTAATATACCGTGAAGTCAGGTAACTTGCATCAGTGAAGGGAAACT
TACATAGCCATCAAATGACTGACCAATCAAAGCAGCAAAATTTCAAAACA
AATGAACAAAGCAGCTTCGCTCACAGCTCTACTCTACCATTTTTGCTTTG
ACTTAACTTTGTATTTTAATGACCCGCCAGGTCATTCATTTAAGGGCTAT
GCATGTTAGCCTCCACTGATGCAAGTTACCCAATCTCACAGTAAGCAATA
CTGTAAACAATAGACATTGATATAAACCAGGATTTCAAGGGACACTCAAT
TGCCTCTGTCAATTGATTGATTATTATTCATTAAAATGTCAAAAAATTCA
ATCACGATCACATTAAGGGTTGAAAAAAATGAAAATTTCATTTTTTTGCC
CCTAATTTCATTGAAATTTGGTCAAATTAGTCTCAATAAGGTTCTAAAAT
TCAAAAAATTTTCCTTATTTTTAGTTTCCCTTAGGGTCAGAAGGTGGAAA
ATTGGTGCCGTCTGCTCGAGCAGTTGAAAACTCTAGTATCAGCAGGTGTT
CACTGTAGAGCCATTTTCAGAAATTAAAAGTTTGACCTTTTGGGTAGGCT
CCTTTGGCTTGATTTTTGCTTCAAATGCCTTTAAAATATACCAAACAACA
CAGAATTTAAAATGAATCACAAAATTGAAATAAAAAAAACAAGAAAAAAA
TTCTCAAAATTATTATATAACTGAGCCAAATATTGTACAAAAAGAAACTC
TAAAAGACTCCATGGTGGTAAAGTACTGTAAGCTTGTCTGAGGTCTACAA
CCCCCACCCTTCTTCGGAAATGGAAATAAATGGAAGATTGAAATCATTGA
TAGAAAAAAGACTTTTTACTACTGGCTGCTAAGCAAAGAAATTCAGTTTG
GAGAAAAAAGAGAAAGATCAGAACTTCTGATCATTATGTAAGAATGGGAA
AATTAGCTTCCTTAGTTCCTAATATATTTCTTACTTTTCCAAACTTAGAA
GTCCAAACTAATGTGATAGTTTGATATGATAAGATTAAAACAATTCGCTA
AAAATAACTGACCAGAAATTTCCTTGATCAGTGAATAACTTGTTTATCTT
ATAACAAGCTAACACTCACAAATAATTATAAAAACTTTCCTTTGTAGCCA
CTACTATACTTGTATCTTAAATAGCTTTGTATCTTTTATTTTTTAGGTAG
CACTGAAACTGATTCTCGCAAGTGGCAAATCAGCTGAGTTTATTTTTCCA
CATTTTGCATCAGTTGGAAAAGTCACAGAATTTGTTTACAAGAATTGGCC
AGAAGGTAATTTTGAGAAATTCTTTTTTTATTCTGCTTCGATAGCACTGA
GGTGTACGCCTCAATATCGTAAAAAAGAATGTCTTTAGTTTTCCTTGAAA
AATACAAAATTAACAGTCCACAACATATAAAATACAAAATAGCACCTCAT
GCTTCTCTGCTTGATGCTCAGCAATTAGGAAATAGATCAAGGGTAAGTGG
AGCAATCTAGGGAGAAAGAGTGGCGCCCTCCCCTACCTTCGGGTGGATAG
CTATCGAAAGAGGAGCCTTCGGGTCGCCTCCGATTGCAGTCGGAGACTTA
CTACTTCCATTCTGTAAATTTCATTTTCTTATTTTCTTTGATTTGAAAAA
TACAAGAAAATAATGCCCTATTTAAATCATTCCTTCGAAAGGGAATATAA
AAAGCAATTGTTTCACAGATTATTCTTTGAAAATACAAAAGAAACAGTCG
AGCATGGTTATTTTCCTTGAAAGATACACAAGTTGAGTGTTCATCTTGGT
AGCAGGAAGAATTAGGTTGCCAAAATCACTGAATCATTTGCTTACATTAT
TCTTGTTGTAGAATGGGCTGACGAGAAAGACTCTATTACAAGTCATCATG
TTCTACGCCTGATTTATCAAGGACGTTTTCTTCATGAGAATGTTACATTT
GTTGGTGAGTTGATAAAAATTAGATAAAAGTTTAATTTCTATGTATGTCT
GAAACGTCGTGTGTTGTCTACAAATTAGTACTCTTGGGTACCTAATAGCC
GAGGGGTTGGAAAAAATCTCAAAACTTAAGAAGCTGGGGGTCGAAATAAA
AATGTCCTGGGTGGAAGAATACAGCAGAGTTAGGACAAAAGAGGGAACTT
CCTAAAACATTTTCCCAAAAATTAATAAGCGGGGGGGGGGGTTGGAATAA
GAATGTCCTGGGTTCTCCCGATTCTCTTTTTAACGAAAACTTGAAGTTGA
CATAAAATTGTCCAAAATCTCTTCATTCCCTGGTATGTGCCATTTGTAAC
ACTGAATTTTATGTATATTTTTTATTAGCTTTGAACTTAACTCCTGGAAA
AAGGACAGTCATGCACTTGGTACCAAGGGAAAAATTACCACAACTATCAC
CAGATGGTAAATATCTTTCATACTTTAAAGTTTCCTTTTACCATGAGATT
TAAATGTTTTGGGTGTTGAGAAGACTGTTGATTGTTATGTTATTACTCCG
GGTGCTCAATAAATCTTAAAAGGTATTGCTTATAATAACGCTATATTAGA
GTAAGATACATTATTAGGAGGAGAAAAATCGGGGAAAATATTCAAAATTT
TCTGGAATTGACCAATCTGACAAATATTTTCCCTGCTCTTAAATCTCAAC
CGGCCTGTGACAGAATTTTTGATAAAAAACTGAACTTTTCTTTTGACACT
TAAATTATTTTTATACATTGATAAACGCTAGGTTCTAATAAGGTCAGGGG
CTATGTTAATGGTAACTTGGAGTATCTGTTGTTAATTTGATCAGATTCAG
CAAATTACCTCTGGAGGTAATTTAGGCAAGGACACATCATTTCCATTTTC
GTGCCTATATTACGTAAACAATGACGTCGAAACATTCCTTTTCTTTCATT
TAGATATAGAGAAGAGCCCAAAAACGAGTGAGAGAAGTTGCTGCTGTAAT
ATAATATAATATGTAATCACCACACTGTTGCAGAGAGAGGAAAAAGAGTA
ATTTGTGGGTGGACATATGACATGCGAATCTGTGTGAGATTAGCGTCTTA
TAGAGAATTGACGGATACGTTTTAATAGCTCCAGAATATTCTCTAAGACG
AGAAATACATAGACATAGAGGGAGTGCTTAGGATAGATTACTCCAAAAGA
AATCTGATTTAAAAAGTTTGTTAGTCTTTTACAATTAACCTTGTATATCA
GTCTTCGAGTTCTTCCTTTTATTAAAAATCGTAAACATTAATGAACATCC
ATAATTCACCCTGNTTTTTAGGCCCCCCCCCCCCCCGTTTATTAATTTTA
AGAATATTTTCAGTTGTCAAAGAGAAGGCCTCTTATTTTGCTCTAAATGG
CCTGATTTTAGCCTATATTTACCTTATTTCGGGTTTTCAGATGTACCATT
TTCAACCCCCGGCAATTAGCCCCCCCCTGTTTATTGAAATCTCGAAAATT
TTCCGACCTCCCTCCCCCCTGTTTATTTGGACCCTAAGAGTATCCTTGTT
TAATAACTGCACTTTCATAAAAATCATCTTCATAATGAACTTAAAGAGTG
AATTCGAGTGGTCGAGAGAGAGACGTAGAATTTTATTGTTTATTAAACAT
TTTGTACATATGAAATAATTATTTTTTTTTCGTCTTTTTTGCAAATATTT
TATTATTATTATTATATTCGTTGTCATTTTACAAATTATTATTTTGGTCA
CACTTTCATCAAAGATATTCTTTGGCCATGCTCGAGTTTGATGTCGCTCT
CTGGAATCCTGCCAATTAAAACTTTTTGCATTGAGTTTAGAATCTTCAAC
CTTTCTCGAGTAAGAAAAAGTGGAGCGTTGAGATTTACGCTGCTCTTAGA
ATGACGGATTGAATCCATCTCTTTCTTTTTTTTAAGCGGCATTTTTTTTC
AACAAACCAGGCGGGTCACGCGTTTTAGATGGGAAATGAGTGGCTTCATT
TTTCGTCCAAGAGTTTCAAATCTAGCCCTCAAATTCACCATGAGCTATTT
TGTTTGGGTGTCATTATAAATGTTTTAAAACATTATTCTGGTGTCATCAC
ATGTCAAAAGATTGCTTTTTAATTGGGGATACAAGCATAACATATTTGAT
CCTTGAAAACAATGCTAGGAGAATCCAAAGGGTAGTAAACTTTGTCCAGT
ACTGGCTTTTCGAGGATTTCTTACGTAGACTTTTCTGAATATTTCTCATG
GAATTCTTTATTTGTTATTATACAAAAGTGTTTCTTTTTATTTTCATAGC
AGATTGTGTATTAGCTTTAAGACAATTTTTTATTGTAGTTATAACTAGAG
ACTGGTTGTATTTTGAATAATAACATTAATACTGGTTGCAAGCACTTTTA
TTTTGTCTAGTTTTCTGGTTT

Coding sequence (CDS) from alignment at scaffold_123:315521..323041-

>TCONS_00047234 ID=TCONS_00047234|Name=TCONS_00047234|organism=Clytia hemisphaerica|type=CDS|length=2730bp|location=Sequence derived from alignment at scaffold_123:315521..323041- (Clytia hemisphaerica)
ATATAGAGAAGAGCCCAAAAACGAGTGAGAGAAGTTGCTGCTGTAATATA
ATATAACTTTGAACTTAACTCCTGGAAAAAGGACAGTCATGCACTTGGTA
CCAAGGGAAAAATTACCACAACTATCACCAGATGAATGGGCTGACGAGAA
AGACTCTATTACAAGTCATCATGTTCTACGCCTGATTTATCAAGGACGTT
TTCTTCATGAGAATGTTACATTTGTTGGTAGCACTGAAACTGATTCTCGC
AAGTGGCAAATCAGCTGAGTTTATTTTTCCACATTTTGCATCAGTTGGAA
AAGTCACAGAATTTGTTTACAAGAATTGGCCAGAAGATGTCTGAGGCTGG
AGGGACTACCAATGAAGTGAATGAGCTGAACAACTCTCTGCTAGAGGAAA
ACAAAGATAAGTCAAAAACAGTCAGCGTCAGCAACAAAAAAGAGGAGGTT
GATGATTTATCACCATCCTCTTCAGATAATATAAAGAAACAAGTACCTGA
AAGCAACAATATCAAGACTAGCAATGGATCAATACCAAAGGATAAGATAT
AGAGAAGAGCCCAAAAACGAGTGAGAGAAGTTGCTGCTGTAATATAATAT
AACTTTGAACTTAACTCCTGGAAAAAGGACAGTCATGCACTTGGTACCAA
GGGAAAAATTACCACAACTATCACCAGATGAATGGGCTGACGAGAAAGAC
TCTATTACAAGTCATCATGTTCTACGCCTGATTTATCAAGGACGTTTTCT
TCATGAGAATGTTACATTTGTTGGTAGCACTGAAACTGATTCTCGCAAGT
GGCAAATCAGCTGAGTTTATTTTTCCACATTTTGCATCAGTTGGAAAAGT
CACAGAATTTGTTTACAAGAATTGGCCAGAAGATGTCTGAGGCTGGAGGG
ACTACCAATGAAGTGAATGAGCTGAACAACTCTCTGCTAGAGGAAAACAA
AGATAAGTCAAAAACAGTCAGCGTCAGCAACAAAAAAGAGGAGGTTGATG
ATTTATCACCATCCTCTTCAGATAATATAAAGAAACAAGTACCTGAAAGC
AACAATATCAAGACTAGCAATGGATCAATACCAAAGGATAAGATATAGAG
AAGAGCCCAAAAACGAGTGAGAGAAGTTGCTGCTGTAATATAATATAACT
TTGAACTTAACTCCTGGAAAAAGGACAGTCATGCACTTGGTACCAAGGGA
AAAATTACCACAACTATCACCAGATGAATGGGCTGACGAGAAAGACTCTA
TTACAAGTCATCATGTTCTACGCCTGATTTATCAAGGACGTTTTCTTCAT
GAGAATGTTACATTTGTTGGTAGCACTGAAACTGATTCTCGCAAGTGGCA
AATCAGCTGAGTTTATTTTTCCACATTTTGCATCAGTTGGAAAAGTCACA
GAATTTGTTTACAAGAATTGGCCAGAAGATGTCTGAGGCTGGAGGGACTA
CCAATGAAGTGAATGAGCTGAACAACTCTCTGCTAGAGGAAAACAAAGAT
AAGTCAAAAACAGTCAGCGTCAGCAACAAAAAAGAGGAGGTTGATGATTT
ATCACCATCCTCTTCAGATAATATAAAGAAACAAGTACCTGAAAGCAACA
ATATCAAGACTAGCAATGGATCAATACCAAAGGATAAGATATAGAGAAGA
GCCCAAAAACGAGTGAGAGAAGTTGCTGCTGTAATATAATATAACTTTGA
ACTTAACTCCTGGAAAAAGGACAGTCATGCACTTGGTACCAAGGGAAAAA
TTACCACAACTATCACCAGATGAATGGGCTGACGAGAAAGACTCTATTAC
AAGTCATCATGTTCTACGCCTGATTTATCAAGGACGTTTTCTTCATGAGA
ATGTTACATTTGTTGGTAGCACTGAAACTGATTCTCGCAAGTGGCAAATC
AGCTGAGTTTATTTTTCCACATTTTGCATCAGTTGGAAAAGTCACAGAAT
TTGTTTACAAGAATTGGCCAGAAGATGTCTGAGGCTGGAGGGACTACCAA
TGAAGTGAATGAGCTGAACAACTCTCTGCTAGAGGAAAACAAAGATAAGT
CAAAAACAGTCAGCGTCAGCAACAAAAAAGAGGAGGTTGATGATTTATCA
CCATCCTCTTCAGATAATATAAAGAAACAAGTACCTGAAAGCAACAATAT
CAAGACTAGCAATGGATCAATACCAAAGGATAAGATATAGAGAAGAGCCC
AAAAACGAGTGAGAGAAGTTGCTGCTGTAATATAATATAACTTTGAACTT
AACTCCTGGAAAAAGGACAGTCATGCACTTGGTACCAAGGGAAAAATTAC
CACAACTATCACCAGATGAATGGGCTGACGAGAAAGACTCTATTACAAGT
CATCATGTTCTACGCCTGATTTATCAAGGACGTTTTCTTCATGAGAATGT
TACATTTGTTGGTAGCACTGAAACTGATTCTCGCAAGTGGCAAATCAGCT
GAGTTTATTTTTCCACATTTTGCATCAGTTGGAAAAGTCACAGAATTTGT
TTACAAGAATTGGCCAGAAGATGTCTGAGGCTGGAGGGACTACCAATGAA
GTGAATGAGCTGAACAACTCTCTGCTAGAGGAAAACAAAGATAAGTCAAA
AACAGTCAGCGTCAGCAACAAAAAAGAGGAGGTTGATGATTTATCACCAT
CCTCTTCAGATAATATAAAGAAACAAGTACCTGAAAGCAACAATATCAAG
ACTAGCAATGGATCAATACCAAAGGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030087XLOC_030087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047234-exon-scaffold_123-1575043694:322683..323041TCONS_00047234-exon-scaffold_123-1575043694:322683..323041Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1575043694:318587..318695TCONS_00047234-exon-scaffold_123-1575043694:318587..318695Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1575043694:317938..318030TCONS_00047234-exon-scaffold_123-1575043694:317938..318030Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1575043694:317486..317563TCONS_00047234-exon-scaffold_123-1575043694:317486..317563Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1575043694:315521..316988TCONS_00047234-exon-scaffold_123-1575043694:315521..316988Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1510915933:322683..323041TCONS_00047234-exon-scaffold_123-1510915933:322683..323041Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1510915933:318587..318695TCONS_00047234-exon-scaffold_123-1510915933:318587..318695Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1510915933:317938..318030TCONS_00047234-exon-scaffold_123-1510915933:317938..318030Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1510915933:317486..317563TCONS_00047234-exon-scaffold_123-1510915933:317486..317563Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1510915933:315521..316988TCONS_00047234-exon-scaffold_123-1510915933:315521..316988Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1491911889:322683..323041TCONS_00047234-exon-scaffold_123-1491911889:322683..323041Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1491911889:318587..318695TCONS_00047234-exon-scaffold_123-1491911889:318587..318695Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1491911889:317938..318030TCONS_00047234-exon-scaffold_123-1491911889:317938..318030Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1491911889:317486..317563TCONS_00047234-exon-scaffold_123-1491911889:317486..317563Clytia hemisphaericaexon
TCONS_00047234-exon-scaffold_123-1491911889:315521..316988TCONS_00047234-exon-scaffold_123-1491911889:315521..316988Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047234-proteinTCONS_00047234-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:315521..323041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5705	11.8299	9.05829	9.35907	115.475	83.4617	54.3358	57.6404	32.6844	33.7732	28.7853	27.151	20.1516	17.4289	15.0613	17.3021	25.9454	25.9892	22.0957	27.7375	26.7295	27.1597	20.8748	24.0443	26.4308	27.189	43.444	38.1858	26.639	25.9572
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
Blast
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BLAST of TCONS_00047234 vs. Swiss-Prot (Human)
Match: UBL3 (Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.647e-29
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 3 
Query:  342 SIPKDKVALKLILASGKSAEFIFPHFASVGKVTEFVYKNWPEEWADEKDSITSHHVLRLIYQGRFLHENVTFVALNLTPGKRTVMHLVPREKLPQLSPDDIEKSPKTSERSCC 680
            ++P D + L+LIL SGK+ EF+F    S   + + VY NWP +W  E++ ++S ++LRLIYQGRFLH NVT  AL L  GK TVMHLV RE LP+ +        KT E +CC
Sbjct:    4 NVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDW--EEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNCC 114
The following BLAST results are available for this feature:
BLAST of TCONS_00047234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBL39.647e-2948.67Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 P... [more]
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