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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047235 ID=TCONS_00047235|Name=TCONS_00047235|organism=Clytia hemisphaerica|type=transcript|length=4004bp
CAGAGTAGCCCATCTGGAGGCTTAGAATATATATATGCAAACATAATAAG
ATATTTATCAATGGTAGCAGAGTGATGGCTGAGAAGAAGTTGTACAGAGA
AGAAAAGTTGATGCCTCCAGTATGGGACTCTAGTCATCAAAACTACAATG
ACTGGAGATTTTGTGTTGAACTTTGGGATAGTGCATGTGATAgagcaaaa
attgcaaaagcTGACAGGAGCTATTTGTTATTTGCAAAGCTGAAAGATAT
TAAGAGAGATGGATTGGGTGCTAAATTGATAACTGCAGCCCAATTGGGAA
ATATTGATGTATTTGGAGACCAAGGAGTTAAACAGATTTTGACGGTATTA
GACGAACGATTTAAAGAGGACCAATTAGCACTGAAAAAGAAAGCGTGGCA
TTCATTCATCAACACCAAACGAAACCAGGAAGAAGAGGTTGATACGTATA
TTGATAAATACGAGGAGAATGTTGCTGACTTGAGAAAACTCGGTAGAGAC
TTAGATGATGAGACTTTAGCACTACAATTAATGGAAAATGCTTCCCTATC
TGATGAACTTAGTCAACTCGTTTTGAGTGGTATCGATGAAAAGCAAGCAA
ATATCTTTGATCAAGCGAAGCGATCAATGAGAAAGTATTTGGGTAGCACT
AAGACCGGACTGAGTGTTAAAGGTACTTCAATAGTAAAAGAAGAAGCCTT
TGATACTTCGCACGTCAATGATGAAGAAGCTATGTATATGTATAGCGGTA
GTCCACGAGGACGAGGAAGAGGAGGTGGTGGTCGAGGTAGATCTTACGCG
AGAGGTCGAGGAAACCATCAACGAGGTGGGAACAGCAATTTCCCTCCCCG
TCAACGATCAAATGCCCAACAACGAGCTAGATTCAGTAGCAATGCGAGAG
CACGAGGTGGAGTAAGGAGGAGAGAAACTAATCCACTCGATGATGACGGG
TACCCAATGACATGTAACATTTGCGGctcaattttccatttttcaggcCG
TAACGGTACAGGTTGTCCTGAATCTTACGAAAATCAGCAGCAAGTCAACG
TTGCTGGAAACGAAAACCCGGAAGTTAAAGAAGCGAACATTTGTGACATT
CCGATAAAGCACGAAGAAGTATTTCATATGAGAAGCAGTGAAGAAGCACT
GCTAGATAGTTGTTGTTCTGCTAATGTAATgggaaaacaatggaaagaca
tTTTCATTGATGCTATGTCTGATGAGGACAAAAGTGAAATAAGACATTTC
AAAGGTGGTACTGTCTTTCGTTTTGGCGGTGAGCCACCTGTGAGATCAAC
TGAGAAAATCGAATTCCCGTGCTACGTATTAGGGGAAAGATCTACTATGA
TTGCTGATGTTGTTGATAGAGATATCCCACTCCTTATCTCAAAACCAGAA
ATGAAAACTCGAGGTTTCATACTTGACTTTAACAATGAAACTTTGACCGC
AAACGGTGTATGTCATGTGTTACAGACAACATCAACAGGACATTTTAAAA
TCCCATTATGGAAAGATGAAGAAGTGAATGTTTGTATAACTGAAATGGAG
ATGAACGAACAACGTAAAGTGCTGATCAAATTACATAGACAATTCCGACA
TAATTCTGCTAAAGCAACCGAAGATTTGTTACGAAACGCAGGTCTTTTGA
CCAACGATATAAGGAAAATCAACAAGGAAGTTGTTGCGGACTGTGACATT
TGTAAACAATACAAGAAAACACCTGCCAGACCAGAAGTCGCATTACCAAT
TGCCAAGAAATTCAATGACGTAGTGGCAATGGATCTAAAGATTGTGAAGA
ACGGTGAACTTTATTTCATTCACTTCAGTGATTTATTTACCAGGTTCTCG
AAATCAGCAGTTTGGTCAAGAAAGCTTCCAAGTTCTGTCGTGAATGCTTA
CATTTTAACCTGGATCGAATCAGGTTTCGGAGCTTCCAACAAGGTGATTG
TCGATAACGGTGGGGAATTTGACAATCCAGAATTCCTCGATGCTATGGAA
CAATATAATATCGAGGTTTGTGCAACAGGTGCTGAATCTCCATGGAGCAA
TGGAGAGTGTGAAAGAAACCACGCTGTTGTAGATTTGATGGTCGAAAAGA
TGATGTTGGAAGACAAGTCTCTGAGTGTTCGAGAGGCTCTGGCGCATGCA
GTTAGTGCTAAGAACTCTTTGCAAAACTACAATGGTTTTGCACCTATCCA
ACTTGTTACCGGTGCACTTCCTAATTTGCCATCCGTTTTGGTGAATGGGT
TGCCTGCACTTGAAGAAGCTGAAGGTGATCGTACAAAGACTCACCTGGAG
AGAATGTATTCTGCCAGACGTGCGTTTGTCAAAGCAGAATCGTCGGAAAA
GATCAAACGAGCATTGAGACATCCTGTACGTTCGTGTGAGACTATCTTTG
TAAACGGTGAAAAGGTGTACTACAAGAGAGCTGCTGACAACAAATGGAGA
GGACCGGCCAAAGTGATAGGTCACCTCTCTACAAAGGTATTTGTTGTACA
TGGTTCCAGAGTGTTAAGTTGCTCTTCATCTCGAGTCATCCCTGTGTAAA
CTCGACGCACACAAAAGGAATTATGAAAGATGATATTTCGTTAGAAGAGA
ATCAAGCAAATTCATCTGATGACGAGTTATCAATTGCTGCATTCACTCCG
CTAGCTGAAAACAGTGTCAATTCTGATGACGAAACACAAGTGGAAAACAA
TTCAACCCAACGAATTGAGAATGAGCCAGAGGAATTAAGACGATCCGTAC
GCAACAAACGAGCTCCTGCCAGATACATCCCAGAAGAAGGAGCTTGGGAA
ACAGAAACGCAAGAAGCAAACGTTGTGTTCATCCCTGTCAGTCGTCACGG
TGAACCAGAGGTGATTGCTGCAAAAGAAGCTGAGTTAGAGAATTGGAAAG
CAACTGAAGCTGTTGATACCGTTGATGATACAGGTCAGAAACTTATCTCT
ACGAGATGGGTTGTAACAGAGAAAGAGTTTGCTCCAGGACAGTTTAAGCC
GAAAGCAAGGTTAGTCGTCAGAGGATTTGAAGAAACCAATGAAGTTCAGG
TTGACGCGCCCACAGCAAGTAAAGCAGCTTTGCGAACCGTTCTCGCGATT
GCTGTAAACAAACAGTGGGGGCTAGAACACAGCAAGTAAAGCAGCTTTGC
GAACCGTTCTCGCGATTGCTGTAAACAAACAGTGGGGGCTAGAACACATT
GATGTCAAGGCGGCTTTTCTCCAAGGACGTAAGATCGAGCGTAATGTCTA
CGTCAAACCTCCAGAAGAAGCAGCAACAGATGGGAAGGTGTGGAGATTGA
GAAAGGCGGCGTACGGCCTAGTTGATGCAGCACGAAACTGGTATCTATCC
GTTAAAGATACCCTTCTTCAGCTTGGTTGTGTTCAATCCAACTTAGACAA
AGCAGTTTTTCGCTATTACGATAAAGGTGAACTGCTTGGTGCTATTGTGT
TGCATGTCGACGATTTCATGTTTGCAGGTACTAAGTTATTTCATGAAAAC
GTCACTGAGAAAGTTATTACGAAGTTCAAAGTCGGTTTACGCAAGACCGA
TGTGTTCAAGTATGTTGGATTGAATATTCGTCGAGAAAGTGATGTTATCA
TTTTATTACAAGATGAATACGTTAAGGAGCTCCAATCGTTTGAAATTGAT
TCGTCCGAAGACGATAGAGAGCTTTCTTCCGATGAGATGAGATTATTACG
AGAAGTCGGTGGTCAATTGTTGTGGATCAGCTCGCAAACGCGTCCCGATC
TGAGTTTTGATACACTTGAGATGAGTGTGTCTAAAAACCAGGCATCAATT
AAAACCTTGAAACGATGTTTAAAAGTTATCAAGAaagcaaaagagaaatc
gtcACGTATAATGTTCAGACCCATTGGTGAAGACATGAAGTTATTTGTCT
TTGCTGATGCTGGTTTTTGCAACCTGCCAGACAAGATGTCTAGCACAGCA
GGTTTTGTGATTTTATTGATCGGTGAGAAGGGAAGTTGTATTCTCGATTG
GGGA Run BLAST on NCBI transcript from alignment at scaffold_123:335990..340458- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047235 ID=TCONS_00047235|Name=TCONS_00047235|organism=Clytia hemisphaerica|type=transcript|length=4469bp|location=Sequence derived from alignment at scaffold_123:335990..340458- (Clytia hemisphaerica)
CAGAGTAGCCCATCTGGAGGCTTAGAATATATATATGCAAACATAATAAG
ATATTTATCAATGGTAGCAGAGTGATGGCTGAGAAGAAGTTGTACAGAGA
AGAAAAGTTGATGCCTCCAGTATGGGACTCTAGTCATCAAAACTACAATG
ACTGGAGATTTTGTGTTGAACTTTGGGATAGTGCATGTGATAGAGCAAAA
ATTGCAAAAGCTGACAGGAGCTATTTGTTATTTGCAAAGCTGAAAGATAT
TAAGAGAGATGGATTGGGTGCTAAATTGATAACTGCAGCCCAATTGGGAA
ATATTGATGTATTTGGAGACCAAGGAGTTAAACAGATTTTGACGGTATTA
GACGAACGATTTAAAGAGGACCAATTAGCACTGAAAAAGAAAGCGTGGCA
TTCATTCATCAACACCAAACGAAACCAGGAAGAAGAGGTTGATACGTATA
TTGATAAATACGAGGAGAATGTTGCTGACTTGAGAAAACTCGGTAGAGAC
TTAGATGATGAGACTTTAGCACTACAATTAATGGAAAATGCTTCCCTATC
TGATGAACTTAGTCAACTCGTTTTGAGTGGTATCGATGAAAAGCAAGCAA
ATATCTTTGATCAAGCGAAGCGATCAATGAGAAAGTATTTGGGTAGCACT
AAGACCGGACTGAGTGTTAAAGGTACTTCAATAGTAAAAGAAGAAGCCTT
TGATACTTCGCACGTCAATGATGAAGAAGCTATGTATATGTATAGCGGTA
GTCCACGAGGACGAGGAAGAGGAGGTGGTGGTCGAGGTAGATCTTACGCG
AGAGGTCGAGGAAACCATCAACGAGGTGGGAACAGCAATTTCCCTCCCCG
TCAACGATCAAATGCCCAACAACGAGCTAGATTCAGTAGCAATGCGAGAG
CACGAGGTGGAGTAAGGAGGAGAGAAACTAATCCACTCGATGATGACGGG
TACCCAATGACATGTAACATTTGCGGCTCAATTTTCCATTTTTCAGGCCG
TAACGGTACAGGTTGTCCTGAATCTTACGAAAATCAGCAGCAAGTCAACG
TTGCTGGAAACGAAAACCCGGAAGTTAAAGAAGCGAACATTTGTGACATT
CCGATAAAGCACGAAGAAGTATTTCATATGAGAAGCAGTGAAGAAGCACT
GCTAGATAGTTGTTGTTCTGCTAATGTAATGGGAAAACAATGGAAAGACA
TTTTCATTGATGCTATGTCTGATGAGGACAAAAGTGAAATAAGACATTTC
AAAGGTGGTACTGTCTTTCGTTTTGGCGGTGAGCCACCTGTGAGATCAAC
TGAGAAAATCGAATTCCCGTGCTACGTATTAGGGGAAAGATCTACTATGA
TTGCTGATGTTGTTGATAGAGATATCCCACTCCTTATCTCAAAACCAGAA
ATGAAAACTCGAGGTTTCATACTTGACTTTAACAATGAAACTTTGACCGC
AAACGGTGTATGTCATGTGTTACAGACAACATCAACAGGACATTTTAAAA
TCCCATTATGGAAAGATGAAGAAGTGAATGTTTGTATAACTGAAATGGAG
ATGAACGAACAACGTAAAGTGCTGATCAAATTACATAGACAATTCCGACA
TAATTCTGCTAAAGCAACCGAAGATTTGTTACGAAACGCAGGTCTTTTGA
CCAACGATATAAGGAAAATCAACAAGGAAGTTGTTGCGGACTGTGACATT
TGTAAACAATACAAGAAAACACCTGCCAGACCAGAAGTCGCATTACCAAT
TGCCAAGAAATTCAATGACGTAGTGGCAATGGATCTAAAGATTGTGAAGA
ACGGTGAACTTTATTTCATTCACTTCAGTGATTTATTTACCAGGTTCTCG
AAATCAGCAGTTTGGTCAAGAAAGCTTCCAAGTTCTGTCGTGAATGCTTA
CATTTTAACCTGGATCGAATCAGGTTTCGGAGCTTCCAACAAGGTGATTG
TCGATAACGGTGGGGAATTTGACAATCCAGAATTCCTCGATGCTATGGAA
CAATATAATATCGAGGTTTGTGCAACAGGTGCTGAATCTCCATGGAGCAA
TGGAGAGTGTGAAAGAAACCACGCTGTTGTAGATTTGATGGTCGAAAAGA
TGATGTTGGAAGACAAGTCTCTGAGTGTTCGAGAGGCTCTGGCGCATGCA
GTTAGTGCTAAGAACTCTTTGCAAAACTACAATGGTTTTGCACCTATCCA
ACTTGTTACCGGTGCACTTCCTAATTTGCCATCCGTTTTGGTGAATGGGT
TGCCTGCACTTGAAGAAGCTGAAGGTGATCGTACAAAGACTCACCTGGAG
AGAATGTATTCTGCCAGACGTGCGTTTGTCAAAGCAGAATCGTCGGAAAA
GATCAAACGAGCATTGAGACATCCTGTACGTTCGTGTGAGACTATCTTTG
TAAACGGTGAAAAGGTGTACTACAAGAGAGCTGCTGACAACAAATGGAGA
GGACCGGCCAAAGTGATAGGTCACCTCTCTACAAAGGTATTTGTTGTACA
TGGTTCCAGAGTGTTAAGTTGCTCTTCATCTCGAGTCATCCCTGTGTAAA
CTCGACGCACACAAAAGGAATTATGAAAGATGATATTTCGTTAGAAGAGA
ATCAAGCAAATTCATCTGATGACGAGTTATCAATTGCTGCATTCACTCCG
CTAGCTGAAAACAGTGTCAATTCTGATGACGAAACACAAGTGGAAAACAA
TTCAACCCAACGAATTGAGAATGAGCCAGAGGAATTAAGACGATCCGTAC
GCAACAAACGAGCTCCTGCCAGATACATCCCAGAAGAAGGAGCTTGGGAA
ACAGAAACGCAAGAAGCAAACGTTGTGTTCATCCCTGTCAGTCGTCACGG
TGAACCAGAGGTGATTGCTGCAAAAGAAGCTGAGTTAGAGAATTGGAAAG
CAACTGAAGCTGTTGATACCGTTGATGATACAGGTCAGAAACTTATCTCT
ACGAGATGGGTTGTAACAGAGAAAGAGTTTGCTCCAGGACAGTTTAAGCC
GAAAGCAAGGTTAGTCGTCAGAGGATTTGAAGAAACCAATGAAGTTCAGG
TTGACGCGCCCACAGCAAGTAAAGCAGCTTTGCGAACCGTTCTCGCGATT
GCTGTAAACAAACAGTGGGGGCTAGAACACATTGATGTCAAGGCGGCTTT
TCTCCAAGGACGTAAGATCGAGCGTAATGTCTACGTCAAACCTCCAGAAG
AAGCAGCAACAGATGGGAAGGTGTGGAGATTGAGAAAGGCGGCGTACGGC
CTAGTTGATGCAGCACGAAACTGGTATCTATCCTGNCAAACGAGCTCCTG
CCAGATACATCCCAGAAGAAGGAGCTTGGGAAACAGAAACGCAAGAAGCA
AACGTTGTGTTCATCCCTGTCAGTCGTCACAGTGAACCAGAGGTGATTGC
TGCAAGAGAAGCTGAGTTAGAGAATTGGAAAGCAACTGAAGCTGTTGATA
CCGTTGATGATACAGGTCAGAAACTTATCTCTACGAGATGGGTTGTAACA
GAGAAAGAGTTTGCTCCAGGACAGTTTAAGCCGAAAGCAAGGTTAGTCGT
CAGAGGATTTGAAGAAACCAATGAAGTTCAGGTTGACGCGCCCACAGCAA
GTAAAGCAGCTTTGCGAACCGTTCTCGCGATTGCTGTAAACAAACAGTGG
GGGCTAGAACACATTGATGTCAAGGCGGCTTTTCTCCAAGGACGTAAGAT
CGAGCGTAATGTCTACGTCAAACCTCCAGAAGAAGCAGCAACAGATGGGA
AGGTGTGGAGATTGAGAAAGGCGGCGTACGGCCTAGTTGATGCAGCACGA
AACTGGTATCTATCCGTTAAAGATACCCTTCTTCAGCTTGGTTGTGTTCA
ATCCAACTTAGACAAAGCAGTTTTTCGCTATTACGATAAAGGTGAACTGC
TTGGTGCTATTGTGTTGCATGTCGACGATTTCATGTTTGCAGGTACTAAG
TTATTTCATGAAAACGTCACTGAGAAAGTTATTACGAAGTTCAAAGTCGG
TTTACGCAAGACCGATGTGTTCAAGTATGTTGGATTGAATATTCGTCGAG
AAAGTGATGTTATCATTTTATTACAAGATGAATACGTTAAGGAGCTCCAA
TCGTTTGAAATTGATTCGTCCGAAGACGATAGAGAGCTTTCTTCCGATGA
GATGAGATTATTACGAGAAGTCGGTGGTCAATTGTTGTGGATCAGCTCGC
AAACGCGTCCCGATCTGAGTTTTGATACACTTGAGATGAGTGTGTCTAAA
AACCAGGCATCAATTAAAACCTTGAAACGATGTTTAAAAGTTATCAAGAA
AGCAAAAGAGAAATCGTCACGTATAATGTTCAGACCCATTGGTGAAGACA
TGAAGTTATTTGTCTTTGCTGATGCTGGTTTTTGCAACCTGCCAGACAAG
ATGTCTAGCACAGCAGGTTTTGTGATTTTATTGATCGGTGAGAAGGGAAG
TTGTATTCTCGATTGGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047235-exon-scaffold_123-1575043694:337329..340458 | TCONS_00047235-exon-scaffold_123-1575043694:337329..340458 | Clytia hemisphaerica | exon |
| TCONS_00047235-exon-scaffold_123-1575043694:335990..336863 | TCONS_00047235-exon-scaffold_123-1575043694:335990..336863 | Clytia hemisphaerica | exon |
| TCONS_00047235-exon-scaffold_123-1510915933:337329..340458 | TCONS_00047235-exon-scaffold_123-1510915933:337329..340458 | Clytia hemisphaerica | exon |
| TCONS_00047235-exon-scaffold_123-1510915933:335990..336863 | TCONS_00047235-exon-scaffold_123-1510915933:335990..336863 | Clytia hemisphaerica | exon |
| TCONS_00047235-exon-scaffold_123-1491911889:337329..340458 | TCONS_00047235-exon-scaffold_123-1491911889:337329..340458 | Clytia hemisphaerica | exon |
| TCONS_00047235-exon-scaffold_123-1491911889:335990..336863 | TCONS_00047235-exon-scaffold_123-1491911889:335990..336863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:335990..340458 - |
Blast
The following BLAST results are available for this feature:
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