TCONS_00047249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047249
Unique NameTCONS_00047249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047249 ID=TCONS_00047249|Name=TCONS_00047249|organism=Clytia hemisphaerica|type=transcript|length=861bp
ATTTGGAGTAAGATTTCTTGATTGGAACGATTGAGTATGGAATCCATCCA
ATAGAGGATGAAATGCATTTCACAGTCAAAGCTGAACAATGTAAGTCCTT
GACTTTATCTACTGAAATCTGTGCTATAAAATGGCAGGCTGTACTTTTTT
CACCATTACTTTCAATGATATAGAtataattaaaaatgataagTAGTTAG
AAAGATAACTTTGATCCAACTGATGTAAGTGTTGAAGAAATTCCAGTTCG
AATATACTCCCTTGCAGAAAGATCATGATCCAGTgtggtttatttattta
tttatttatcttttGGATTGTTAACCATTGCTACGGCGTGGCATCAGTAc
caaaaacaagaaatttaaaaaaagatgtgagaaacaaatcaaatttaagG
CTTGgtgacacgagaagtttttttcgcgttggtgcaatgcaacatgctcc
atccatTTCCTAAGTGGCTGTACTGCAGCACAATccgaatttttgtcatt
ttagcGTATTTGATTGATGAGAGAATCTTTTttatcatcaacatgaaaat
ACGAGNTTAGCGTATTTGATTGATGAGAGAATCTTTTTTATCATCAACAG
GAAAATacgagcaatctgattggctgaaaataGGTTCATAAAAcctgtat
ttcatattttacGCGTAAAAAAAGATACCGTGTTCAAACGAAGGGGTCTG
GTAAGCAAAAGATCATATTTAGTACAACTTCAAGTCGACGATAAATCAGT
TATCACACTTTGGCAATATTCACTCGTAAAATattggatatatttttctc
gttcagagttttctataCTCTGTTGTACTTGTTACCATGCAATAATTATT
ACCTTAAgttg
Run BLAST on NCBI

transcript from alignment at scaffold_123:485752..486612-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047249 ID=TCONS_00047249|Name=TCONS_00047249|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at scaffold_123:485752..486612- (Clytia hemisphaerica)
ATTTGGAGTAAGATTTCTTGATTGGAACGATTGAGTATGGAATCCATCCA
ATAGAGGATGAAATGCATTTCACAGTCAAAGCTGAACAATGTAAGTCCTT
GACTTTATCTACTGAAATCTGTGCTATAAAATGGCAGGCTGTACTTTTTT
CACCATTACTTTCAATGATATAGATATAATTAAAAATGATAAGTAGTTAG
AAAGATAACTTTGATCCAACTGATGTAAGTGTTGAAGAAATTCCAGTTCG
AATATACTCCCTTGCAGAAAGATCATGATCCAGTGTGGTTTATTTATTTA
TTTATTTATCTTTTGGATTGTTAACCATTGCTACGGCGTGGCATCAGTAC
CAAAAACAAGAAATTTAAAAAAAGATGTGAGAAACAAATCAAATTTAAGG
CTTGGTGACACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCC
ATCCATTTCCTAAGTGGCTGTACTGCAGCACAATCCGAATTTTTGTCATT
TTAGCGTATTTGATTGATGAGAGAATCTTTTTTATCATCAACATGAAAAT
ACGAGNTTAGCGTATTTGATTGATGAGAGAATCTTTTTTATCATCAACAG
GAAAATACGAGCAATCTGATTGGCTGAAAATAGGTTCATAAAACCTGTAT
TTCATATTTTACGCGTAAAAAAAGATACCGTGTTCAAACGAAGGGGTCTG
GTAAGCAAAAGATCATATTTAGTACAACTTCAAGTCGACGATAAATCAGT
TATCACACTTTGGCAATATTCACTCGTAAAATATTGGATATATTTTTCTC
GTTCAGAGTTTTCTATACTCTGTTGTACTTGTTACCATGCAATAATTATT
ACCTTAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030094XLOC_030094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047249-exon-scaffold_123-1575043694:485752..486612TCONS_00047249-exon-scaffold_123-1575043694:485752..486612Clytia hemisphaericaexon
TCONS_00047249-exon-scaffold_123-1510915933:485752..486612TCONS_00047249-exon-scaffold_123-1510915933:485752..486612Clytia hemisphaericaexon
TCONS_00047249-exon-scaffold_123-1491911889:485752..486612TCONS_00047249-exon-scaffold_123-1491911889:485752..486612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:485752..486612 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123702	0.0534801	0.873454	1.4602	0	0	0	0.135773	0.0461478	0.235752	0.0555205	0.0364622	0.0736113	0	0	0	0.081829	0.0419829	0	0.0620717	0	0	0	0	0	0	0	0	0	0.0618505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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