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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047256 ID=TCONS_00047256|Name=TCONS_00047256|organism=Clytia hemisphaerica|type=transcript|length=1135bp
GGGATAAGAGGCTAGTCACGAGTCCAATCAtacgttttttaatttttttg
tgtattctaatatttttgttatagCTTTAGCAACTCTTGATGGCAGCAGG
TAAACATTGGGGCAGCTCgagaacaaaaattttatttctccTCACTCCAT
TTCGAATTCTACGTCGTCTGCAACCAAATAGATTTTTCAAAACACGTCTA
TAAGAAGAACTTCTTAGTACATATATCATTGGATTACAAACACAGTTCAT
GTTGTAAATCAAAGTACCAATATCAATGTCTACTTGTGACTGTGTTGTTT
GTTTGATCATGTGATTCAATACAAAACCATATTGGCAGCTCAGTGACGTA
ATATATGCCGTCAGAATCATGACGACGTTTAAATTGATACGTCTTTGACG
TCCTTGGATTCTATTTTCGTTGTTATGACGGAATGAACGAACAGCTGATC
GCGAATCTTCAACACTTTTTAAAATTAGGCCGTAAAAAATAAGAATTGCA
CACATTAGCAAGATGGCGATTATCATGCACAAAATCCTAAAACACCGTAA
ACGAAAAAACAACATAATTGGAACCACTAGACCCATTCCTAAAGCAAATG
CCAATAGAACTAATACACGTTCCCTTGTCAAAATTGATTGGTGCTTGAAC
GGCCTTGAAAAGGCTAGATATCGGTTAAAAGCAATCAAAGCTATGAAGAA
ACTCGAACAATAGGTGTTAATTGCTGCAGTATATTTGAAAATGCCAGGTT
GATCATCTAAACATTTGTTTTCCATGTAATAAGCACATTTAGCTGGTATA
ATAACTAAACACGTTAAGGTGTCCCATAGGTTTaatgccaataaaaaaca
aTTAGCATTTGATAATCCAAATCCTCGATTGTGGAAAAGTTTCCACATGC
AGTATAAAGCCAAACAATTGATGATGAAGCCAATGATAGCAATTGGGATG
TTGGCAATTCCGTAATAGTAATAATCACGCATACTATGAAATGAATTAGA
AATATATTACTAAGTTAGactggaacaatagaattcgaATGAGGGATTTA
TATTTAAGGGGCATCAAAGTCATTGACTTCAAAGCCTCAAATCTTAAGGc
tacactttttcttgcttgagaatggttaaagattc Run BLAST on NCBI protein sequence of TCONS_00047256-protein >TCONS_00047256-protein ID=TCONS_00047256-protein|Name=TCONS_00047256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MRDYYYYGIANIPIAIIGFIINCLALYCMWKLFHNRGFGLSNANCFLLAL
NLWDTLTCLVIIPAKCAYYMENKCLDDQPGIFKYTAAINTYCSSFFIALI
AFNRYLAFSRPFKHQSILTRERVLVLLAFALGMGLVVPIMLFFRLRCFRI
LCMIIAILLMCAILIFYGLILKSVEDSRSAVRSFRHNNENRIQGRQRRIN
LNVVMILTAYITSLSCQYGFVLNHMIKQTTQSQVDIDIGTLIYNMNCVCN
PMIYVLRSSSYRRVLKNLFGCRRRRIRNGVRRNKIFVLELPQCLPAAIKS
C Run BLAST on NCBI transcript from alignment at scaffold_123:198690..199824 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047256 ID=TCONS_00047256|Name=TCONS_00047256|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at scaffold_123:198690..199824 (Clytia hemisphaerica)
gaatctttaaccattctcaagcaagaaaaagtgtagCCTTAAGATTTGAG
GCTTTGAAGTCAATGACTTTGATGCCCCTTAAATATAAATCCCTCATtcg
aattctattgttccagtCTAACTTAGTAATATATTTCTAATTCATTTCAT
AGTATGCGTGATTATTACTATTACGGAATTGCCAACATCCCAATTGCTAT
CATTGGCTTCATCATCAATTGTTTGGCTTTATACTGCATGTGGAAACTTT
TCCACAATCGAGGATTTGGATTATCAAATGCTAAttgttttttattggca
ttAAACCTATGGGACACCTTAACGTGTTTAGTTATTATACCAGCTAAATG
TGCTTATTACATGGAAAACAAATGTTTAGATGATCAACCTGGCATTTTCA
AATATACTGCAGCAATTAACACCTATTGTTCGAGTTTCTTCATAGCTTTG
ATTGCTTTTAACCGATATCTAGCCTTTTCAAGGCCGTTCAAGCACCAATC
AATTTTGACAAGGGAACGTGTATTAGTTCTATTGGCATTTGCTTTAGGAA
TGGGTCTAGTGGTTCCAATTATGTTGTTTTTTCGTTTACGGTGTTTTAGG
ATTTTGTGCATGATAATCGCCATCTTGCTAATGTGTGCAATTCTTATTTT
TTACGGCCTAATTTTAAAAAGTGTTGAAGATTCGCGATCAGCTGTTCGTT
CATTCCGTCATAACAACGAAAATAGAATCCAAGGACGTCAAAGACGTATC
AATTTAAACGTCGTCATGATTCTGACGGCATATATTACGTCACTGAGCTG
CCAATATGGTTTTGTATTGAATCACATGATCAAACAAACAACACAGTCAC
AAGTAGACATTGATATTGGTACTTTGATTTACAACATGAACTGTGTTTGT
AATCCAATGATATATGTACTAAGAAGTTCTTCTTATAGACGTGTTTTGAA
AAATCTATTTGGTTGCAGACGACGTAGAATTCGAAATGGAGTGAggagaa
ataaaatttttgttctcGAGCTGCCCCAATGTTTACCTGCTGCCATCAAG
AGTTGCTAAAGctataacaaaaatattagaatacacaaaaaaattaaaaa
acgtaTGATTGGACTCGTGACTAGCCTCTTATCCC Coding sequence (CDS) from alignment at scaffold_123:198690..199824 >TCONS_00047256 ID=TCONS_00047256|Name=TCONS_00047256|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_123:198690..199824 (Clytia hemisphaerica)
ATGCGTGATTATTACTATTACGGAATTGCCAACATCCCAATTGCTATCAT
TGGCTTCATCATCAATTGTTTGGCTTTATACTGCATGTGGAAACTTTTCC
ACAATCGAGGATTTGGATTATCAAATGCTAAttgttttttattggcattA
AACCTATGGGACACCTTAACGTGTTTAGTTATTATACCAGCTAAATGTGC
TTATTACATGGAAAACAAATGTTTAGATGATCAACCTGGCATTTTCAAAT
ATACTGCAGCAATTAACACCTATTGTTCGAGTTTCTTCATAGCTTTGATT
GCTTTTAACCGATATCTAGCCTTTTCAAGGCCGTTCAAGCACCAATCAAT
TTTGACAAGGGAACGTGTATTAGTTCTATTGGCATTTGCTTTAGGAATGG
GTCTAGTGGTTCCAATTATGTTGTTTTTTCGTTTACGGTGTTTTAGGATT
TTGTGCATGATAATCGCCATCTTGCTAATGTGTGCAATTCTTATTTTTTA
CGGCCTAATTTTAAAAAGTGTTGAAGATTCGCGATCAGCTGTTCGTTCAT
TCCGTCATAACAACGAAAATAGAATCCAAGGACGTCAAAGACGTATCAAT
TTAAACGTCGTCATGATTCTGACGGCATATATTACGTCACTGAGCTGCCA
ATATGGTTTTGTATTGAATCACATGATCAAACAAACAACACAGTCACAAG
TAGACATTGATATTGGTACTTTGATTTACAACATGAACTGTGTTTGTAAT
CCAATGATATATGTACTAAGAAGTTCTTCTTATAGACGTGTTTTGAAAAA
TCTATTTGGTTGCAGACGACGTAGAATTCGAAATGGAGTGAggagaaata
aaatttttgttctcGAGCTGCCCCAATGTTTACCTGCTGCCATCAAGAGT
TGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047256-exon-scaffold_123-1491911889:198690..199824 | TCONS_00047256-exon-scaffold_123-1491911889:198690..199824 | Clytia hemisphaerica | exon |
| TCONS_00047256-exon-scaffold_123-1510915933:198690..199824 | TCONS_00047256-exon-scaffold_123-1510915933:198690..199824 | Clytia hemisphaerica | exon |
| TCONS_00047256-exon-scaffold_123-1575043694:198690..199824 | TCONS_00047256-exon-scaffold_123-1575043694:198690..199824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:198690..199824 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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