TCONS_00047264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047264
Unique NameTCONS_00047264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047264 ID=TCONS_00047264|Name=TCONS_00047264|organism=Clytia hemisphaerica|type=transcript|length=720bp
TCCCAAGCAATTTGCGTAATGAGGTGATCGGGGCTTCTTTCTTGCGTGAT
AATACGAGTACACGTTTatctttctataagaacaaactatataagaacac
aaggcttcgatagccaaaatagttgagaatattttaaagatttatggact
caaaaacgcgcgatttctaaggaaaatggacaaaacaccaaaaaaaaaat
ggtgaaattgaGAACATTTATAGATTTGAGAACATCCAAAGCCCgaccca
aaggcttcaaaaatcttggaTGTATTATAAAATGTGTTTGCAAGCATGCA
ACTGTTTACTACGCCAGTACGGGTaaacaaaatttagattttgtaGAGGA
ATCTAGTTTTATAATGATGCCCgcagagtttttttaagaagtcCATAGTT
CTACCAGTTCTACATACTAAAGAAACAagagtttttgttgttttctacAG
TAAAATTTTCACCCAACTCCATCTGCATATTAAATTTGTTTAGCTGCAGT
TTGCAGATATGGCTCAAAACTTTTGGCATCGTGAGCCTCAATACTCCTAT
taaattgttctataaacagTAAGTCAATGTAACTAATAAATAGATTATAA
AATTGGAGATCAGTTTAGTGCACAAAAAAACACTGCAGAAAATTGAACTT
CGTTGCTTAAAATCCGGATTGAAATCAGGAAATGATAGCAATGTGAATTC
AATTTcctgcaatattttta
Run BLAST on NCBI

transcript from alignment at scaffold_123:307205..307924

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047264 ID=TCONS_00047264|Name=TCONS_00047264|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_123:307205..307924 (Clytia hemisphaerica)
taaaaatattgcaggAAATTGAATTCACATTGCTATCATTTCCTGATTTC
AATCCGGATTTTAAGCAACGAAGTTCAATTTTCTGCAGTGTTTTTTTGTG
CACTAAACTGATCTCCAATTTTATAATCTATTTATTAGTTACATTGACTT
ActgtttatagaacaatttaATAGGAGTATTGAGGCTCACGATGCCAAAA
GTTTTGAGCCATATCTGCAAACTGCAGCTAAACAAATTTAATATGCAGAT
GGAGTTGGGTGAAAATTTTACTgtagaaaacaacaaaaactctTGTTTCT
TTAGTATGTAGAACTGGTAGAACTATGgacttcttaaaaaaactctgcGG
GCATCATTATAAAACTAGATTCCTCtacaaaatctaaattttgtttACCC
GTACTGGCGTAGTAAACAGTTGCATGCTTGCAAACACATTTTATAATACA
tccaagatttttgaagcctttgggtcGGGCTTTGGATGTTCTCAAATCTA
TAAATGTTCtcaatttcaccattttttttttggtgttttgtccattttcc
ttagaaatcgcgcgtttttgagtccataaatctttaaaatattctcaact
attttggctatcgaagccttgtgttcttatatagtttgttcttatagaaa
gatAAACGTGTACTCGTATTATCACGCAAGAAAGAAGCCCCGATCACCTC
ATTACGCAAATTGCTTGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030105XLOC_030105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047264-exon-scaffold_123-1491911889:307205..307924TCONS_00047264-exon-scaffold_123-1491911889:307205..307924Clytia hemisphaericaexon
TCONS_00047264-exon-scaffold_123-1510915933:307205..307924TCONS_00047264-exon-scaffold_123-1510915933:307205..307924Clytia hemisphaericaexon
TCONS_00047264-exon-scaffold_123-1575043694:307205..307924TCONS_00047264-exon-scaffold_123-1575043694:307205..307924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:307205..307924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02255	2.54307	3.06481	3.67999	0.561766	0.221957	0.714086	0.417824	0.191741	0.144938	0	0.400032	0	0	0.118271	0	0.0521194	0.0535039	0.0738036	0.0772301	0.134254	0.29468	0	0.358758	0.0745418	0	0	0	0.416089	0.314047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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