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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047272 ID=TCONS_00047272|Name=TCONS_00047272|organism=Clytia hemisphaerica|type=transcript|length=1272bp
GTTGAATAATCACACTATACAGGTAAATTGTATAAATTAGACCACAAATT
ACTAACATATGGTGATATATAGGGTGTCATTAAATATTGCATTTCTTCAA
ACATTACTTCCTTTGGCTGCATCAAAGTCGTAGTCCGGGGTATCAAGCTT
TCGGAAGTAAAAGCGCAAACTAAACATATTAAGTGTAAAAGTGTAAAATA
TTAAGTCTTTAAACTCTTTTcagttttcaattttcttattgAAATAATCC
TTACCGGTTGAATTGCTACTTGAATTAAATAGTTTGTCCTGTTCGTCCTG
CTTCTTAGAAAAAGTAAATCAAGGTCATTGGCAGTTAGTCATTTTTTCAT
CGTGGAGCAAACTCTACCTTGCTGATAAAAAACGCATTAAAGTCATACTT
CTTATACTCGATGTTGACAGTTTCTTGCATTCATGGTAAATCTCCCGGtg
tttgtgatttttgatattgttgAGATCACATTGATCTCGGATGCAATTGG
TAAACATAcgtttttgataaaaacatccaaaattgaatctaaagtttttg
actttttaaattttaagcctaaaaatgttcttaaaatgttcttatttttc
atcaccttgtgaatattttttttccatttttgtagAAACGGtctgttctt
aacttattcttgattttttggcaATGGAAGGTATAGTTATATACGTGCAA
TTTACAGATGGTTTGTCGTTCATATTTTCTATAACTGTAGTTCGGTTGTG
TTTGTTGAACGTACTGCCATTCTTTCGTTGACTCTTTCCCTCATTTCGAG
CATTCTTTGCTCTTGAAAATACTTCTTGGTGTTTAATTTAGGGTACAGTA
ACATACGGATAGCTTTTTGTCCATAAATCATAAACCAAACAACCAAAGTA
TTGATCACAATCGTTAAATTCTGATACAGTTCCTTCTCGACTGGTTGCTG
AAAATTTCCAATGGCAAACATTACAATCAGCATAATGATAGATGCAAAGG
AAGCATACACCAAAGACATTCCATCGTTCATGACACTCGGTAAATGTCGT
CCACGAAACGCTTGAATGAAACAAGCGAACTGTATCACCATGATGAAACC
AAGAACAACATTAACATGGAAGCTTGTATCACAAAAATGCATTCGTTCCA
TCAAGACCATGTTTAATTGAGAGGTTAATGGACTTTTCACTACATGACCA
ACGATAAGCAATGCAACTACAATAAGTGCAGATGATAAAACTGTACAAAT
TTGTAATGTCACTGTCTTTTTT Run BLAST on NCBI protein sequence of TCONS_00047272-protein >TCONS_00047272-protein ID=TCONS_00047272-protein|Name=TCONS_00047272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
KKTVTLQICTVLSSALIVVALLIVGHVVKSPLTSQLNMVLMERMHFCDTS
FHVNVVLGFIMVIQFACFIQAFRGRHLPSVMNDGMSLVYASFASIIMLIV
MFAIGNFQQPVEKELYQNLTIVINTLVVWFMIYGQKAIRMLLYPKLNTKK
YFQEQRMLEMRERVNERMAVRSTNTTELQL Run BLAST on NCBI transcript from alignment at scaffold_123:456425..457696 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047272 ID=TCONS_00047272|Name=TCONS_00047272|organism=Clytia hemisphaerica|type=transcript|length=1272bp|location=Sequence derived from alignment at scaffold_123:456425..457696 (Clytia hemisphaerica)
AAAAAAGACAGTGACATTACAAATTTGTACAGTTTTATCATCTGCACTTA
TTGTAGTTGCATTGCTTATCGTTGGTCATGTAGTGAAAAGTCCATTAACC
TCTCAATTAAACATGGTCTTGATGGAACGAATGCATTTTTGTGATACAAG
CTTCCATGTTAATGTTGTTCTTGGTTTCATCATGGTGATACAGTTCGCTT
GTTTCATTCAAGCGTTTCGTGGACGACATTTACCGAGTGTCATGAACGAT
GGAATGTCTTTGGTGTATGCTTCCTTTGCATCTATCATTATGCTGATTGT
AATGTTTGCCATTGGAAATTTTCAGCAACCAGTCGAGAAGGAACTGTATC
AGAATTTAACGATTGTGATCAATACTTTGGTTGTTTGGTTTATGATTTAT
GGACAAAAAGCTATCCGTATGTTACTGTACCCTAAATTAAACACCAAGAA
GTATTTTCAAGAGCAAAGAATGCTCGAAATGAGGGAAAGAGTCAACGAAA
GAATGGCAGTACGTTCAACAAACACAACCGAACTACAGTTATAGAAAATA
TGAACGACAAACCATCTGTAAATTGCACGTATATAACTATACCTTCCATt
gccaaaaaatcaagaataagttaagaacagaCCGTTTctacaaaaatgga
aaaaaaatattcacaaggtgatgaaaaataagaacattttaagaacattt
ttaggcttaaaatttaaaaagtcaaaaactttagattcaattttggatgt
ttttatcaaaaacgTATGTTTACCAATTGCATCCGAGATCAATGTGATCT
caacaatatcaaaaatcacaaacaCCGGGAGATTTACCATGAATGCAAGA
AACTGTCAACATCGAGTATAAGAAGTATGACTTTAATGCGTTTTTTATCA
GCAAGGTAGAGTTTGCTCCACGATGAAAAAATGACTAACTGCCAATGACC
TTGATTTACTTTTTCTAAGAAGCAGGACGAACAGGACAAACTATTTAATT
CAAGTAGCAATTCAACCGGTAAGGATTATTTcaataagaaaattgaaaac
tgAAAAGAGTTTAAAGACTTAATATTTTACACTTTTACACTTAATATGTT
TAGTTTGCGCTTTTACTTCCGAAAGCTTGATACCCCGGACTACGACTTTG
ATGCAGCCAAAGGAAGTAATGTTTGAAGAAATGCAATATTTAATGACACC
CTATATATCACCATATGTTAGTAATTTGTGGTCTAATTTATACAATTTAC
CTGTATAGTGTGATTATTCAAC Coding sequence (CDS) from alignment at scaffold_123:456425..457696 >TCONS_00047272 ID=TCONS_00047272|Name=TCONS_00047272|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_123:456425..457696 (Clytia hemisphaerica)
AAAAAGACAGTGACATTACAAATTTGTACAGTTTTATCATCTGCACTTAT
TGTAGTTGCATTGCTTATCGTTGGTCATGTAGTGAAAAGTCCATTAACCT
CTCAATTAAACATGGTCTTGATGGAACGAATGCATTTTTGTGATACAAGC
TTCCATGTTAATGTTGTTCTTGGTTTCATCATGGTGATACAGTTCGCTTG
TTTCATTCAAGCGTTTCGTGGACGACATTTACCGAGTGTCATGAACGATG
GAATGTCTTTGGTGTATGCTTCCTTTGCATCTATCATTATGCTGATTGTA
ATGTTTGCCATTGGAAATTTTCAGCAACCAGTCGAGAAGGAACTGTATCA
GAATTTAACGATTGTGATCAATACTTTGGTTGTTTGGTTTATGATTTATG
GACAAAAAGCTATCCGTATGTTACTGTACCCTAAATTAAACACCAAGAAG
TATTTTCAAGAGCAAAGAATGCTCGAAATGAGGGAAAGAGTCAACGAAAG
AATGGCAGTACGTTCAACAAACACAACCGAACTACAGTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047272-exon-scaffold_123-1491911889:456425..457696 | TCONS_00047272-exon-scaffold_123-1491911889:456425..457696 | Clytia hemisphaerica | exon |
| TCONS_00047272-exon-scaffold_123-1510915933:456425..457696 | TCONS_00047272-exon-scaffold_123-1510915933:456425..457696 | Clytia hemisphaerica | exon |
| TCONS_00047272-exon-scaffold_123-1575043694:456425..457696 | TCONS_00047272-exon-scaffold_123-1575043694:456425..457696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:456425..457696 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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