TCONS_00047275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047275
Unique NameTCONS_00047275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047275 ID=TCONS_00047275|Name=TCONS_00047275|organism=Clytia hemisphaerica|type=transcript|length=462bp
CAGAACATGACGCTAAACTGATCCCGGGCTCCCTTGAGCAAGGTCAGTAC
CCGGAAGCTTCCCATGTCAGGGTTACGATGAAGAAATTGTATTGTTATAC
ACGTCCTGAATCCTGAAAGTATGTCTTTAAACTTGTCCTGAGAGATACAC
AAGAACATTATTGAATAACTATGGTTAAAAATGTCCTGAGAGACATAATT
TGATGGTCAAAGATATCTGAAGTGAAGAAAGGCATGGTTTTACTGAGAAA
ACAGAATAACATAACGAAACATTATGAAGAAGCTGCCCATGGTTACATCG
CAGTAAAAACGATTGCATCGACATAGGAATGCTAAGTTAATCCATGGTTG
TAAGACGCAACGCAGTAATAGTTTTCCGAGATAGTTATGCGTTATCAGAT
TCCTAAGAAGTAAGGTGAAACATGCATTTAATTCAACAAAAGACATTTAA
CCTATGGTCAGG
Run BLAST on NCBI

transcript from alignment at scaffold_123:505422..505883

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047275 ID=TCONS_00047275|Name=TCONS_00047275|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at scaffold_123:505422..505883 (Clytia hemisphaerica)
CCTGACCATAGGTTAAATGTCTTTTGTTGAATTAAATGCATGTTTCACCT
TACTTCTTAGGAATCTGATAACGCATAACTATCTCGGAAAACTATTACTG
CGTTGCGTCTTACAACCATGGATTAACTTAGCATTCCTATGTCGATGCAA
TCGTTTTTACTGCGATGTAACCATGGGCAGCTTCTTCATAATGTTTCGTT
ATGTTATTCTGTTTTCTCAGTAAAACCATGCCTTTCTTCACTTCAGATAT
CTTTGACCATCAAATTATGTCTCTCAGGACATTTTTAACCATAGTTATTC
AATAATGTTCTTGTGTATCTCTCAGGACAAGTTTAAAGACATACTTTCAG
GATTCAGGACGTGTATAACAATACAATTTCTTCATCGTAACCCTGACATG
GGAAGCTTCCGGGTACTGACCTTGCTCAAGGGAGCCCGGGATCAGTTTAG
CGTCATGTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030116XLOC_030116Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047275-exon-scaffold_123-1491911889:505422..505883TCONS_00047275-exon-scaffold_123-1491911889:505422..505883Clytia hemisphaericaexon
TCONS_00047275-exon-scaffold_123-1510915933:505422..505883TCONS_00047275-exon-scaffold_123-1510915933:505422..505883Clytia hemisphaericaexon
TCONS_00047275-exon-scaffold_123-1575043694:505422..505883TCONS_00047275-exon-scaffold_123-1575043694:505422..505883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:505422..505883 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.50757	5.86973	26.3951	30.5595	15.8548	10.2529	11.5695	12.2918	16.4703	11.4531	0.128406	0.256353	0	0.484741	0	0	0.301492	0	0.325124	0	23.1587	49.7602	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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