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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047281 ID=TCONS_00047281|Name=TCONS_00047281|organism=Clytia hemisphaerica|type=transcript|length=1219bp
TAAGGGTCTTCATTCTTTAATTCTAATCAGTGGATCTTAGTTAGAGTTGA
AGAAGAGAGGGAAAGTATGAAGGTGAAATATTTGGTTCTCCTTTGCTGCT
TGTTTGGGCTGACCAGAACTGCTCCTGCCAAGAAAGAAGATAAATTACCT
GTCCGACTGTATGGAGAAAGTGGCCGCgagatgaatgaaaagaaagaGGC
AATGCACTCAGGAAAGGATAGTGTtgctgaaaaagaagaaggaaaattGA
AGGCAAAGAAAGATGCGGATGAAGATGttcacaattttttgaaatctcaa
TCGTTGCCATTCATGTTCCAAAAGAAAGATGAAATACCTTtccatttcaa
gaaaaacaCACTGCCGTTCCTTCACATGAAGAAAGAATCGATTCCGTTCC
ATTTCCGCAGAGAAAACATACCGTTCCATTTCCGCAGAGAAAACATTCCG
TTTCATTTCCGCAGAGAAGCATTGCCGTTCGCATTCAGTCGTTCACTCGA
AGAAGAGGAAATCCCTTTCcatttcaaaaagaaagaatttccATCTTTCC
ACATTGGGAAGAAAGAGTTTCCAGTTTTCCACTTTGGGAAGAAAGATGAA
ATCCCTCTCTTCCACAGCAAGAAGACAGTTCTTTATCCAGAAGTTGACGA
AAACGAAGTGCTGCAAATGCTCAACAGTCTCAGTGACGCCCAATCACCCT
ACCACAGAATTTTCCAAAGACGTGAAGCGAATCCTTTATATGCAAATATT
GGAAGGTACGGTCGTCGCTCGATTCCCCGATTGAATCGATATGGGAAGCG
TGCGGTATTCTTGTCAGATGTAATGGACGAGCGCAAACCTATACCTCTTC
AACAAGCCTTCAACCTTCGATTACCGTTGTACCAGAAACGGGATGGCGCT
CTCCCCTTACCTTACGCTTTCGACAAGAAAAGAGAGTCCACACAACGCTT
CGGTAGAGATTATCTCAAATTGGGGAAAACTAAAAACTCTATGAAAAAAA
TCGTCGAGCTGCAATTTACTCCTTTCTCTCGAAGATACGGGAAATAACTT
TTAATATTCAAATTATTAATTCTAGTATTAAAAGGACAAAGCGCAGTgcg
tattttttatttttcaagggCAGCATAGATGAGAGATTGACTTTAATCAT
GACAAATTTTGTATAATAATAAATACCTATTTGttgaatttaggaaaaag
ttttTGCACAATGGAGAAC Run BLAST on NCBI transcript from alignment at scaffold_124:25047..27410- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047281 ID=TCONS_00047281|Name=TCONS_00047281|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at scaffold_124:25047..27410- (Clytia hemisphaerica)
TAAGGGTCTTCATTCTTTAATTCTAATCAGTGGATCTTAGTTAGAGGTAA
GACTACTTTTTGGCCCTTTTCTTCCTTTCTTTCTTCTCTTAAAAGCTTTC
GCTTTCGTTTTCTTTTACGTAAGCATACGATTGATGTAGAATGTAGAATC
TCAATGTTATGAAAATGTAGTTGGTCAATGTGTGTAAGCACTGACAGACT
TCGAATGTTGTTGGGAGGCCTCTAATTAGGTAGGAGTGTTTTTCAATTTT
TTTTTCATACGGCCATATGGTTAAATCCTTAATCTCAGAAGATCTCCCAC
TTAGGTATTAGAAGGATTGAGCTATAACTATATAACTAGTCATAAAGTGG
AAATTTTCTGATGACACTATGAGCCGAATTCTATTTGGCTCCTCGACATC
TATCTATCCGAAAAGGAAAAGTGTGCTGGCTCCTTTTGCAACACATGGTG
TAATTTGTAGTCATTTGAATAAATACTTGATATTCCCTGAGTCCCCATGA
ACTGTTAGATTTGAATGACATTTGGTAGAAATCTTCTTTCTATGAATAGC
TGAGAGTTCCTTTTATAATTTCTTGAAAAATTATGTCTTTGACCCTTGAG
ACCGGTTTTAAATCAGAAGAATGAGCAATTAAAATCGACCTTCAATACAC
CTTTTCGATACTTATAGCCCACTTAGGTATTAGGGTTTTTTTCAATTTTA
CTTCAAGTTCCTATTGGTACTATGGCAAGCGTCTAATACAATATCACATG
GAATTTTTGAAGGCCTTCGAAATATTGCGACTCCTTATTACCCAACTCTT
GTTCAGACTCAATACCAAAATAAAATTCCGTCGTTTGCGACGACAGGAAT
CGTCTAAGTTTTTATTTAATTCGCTTCCTAGACTTAATACCAAAATAGTT
TTTATTTCAAACATTTTGAAATTGGCGTTATTGCGATTTATTTTATGAAA
TTTATAGGAAGTTATACGAACTTTATTCTTTGTTTTTCGCAATACAACCG
TTATTCTCAAATCTCGTTTTCTGTCTACGCCTTTGTACACAACAAAAGAA
AGGTACCAAAGAATTTCCGTTTTTTCGGCCACGAAATTCAGTTAACGGTC
CTTTCTTGGGAATTTTTTTATCTTTCTCATCTGTCGTTAGAAAGAAAGTT
ACAAAACGAAATGTTAATTCAAGAAAACTTTGTTTTTTCAGTTGAAGAAG
AGAGGGAAAGTATGAAGGTGAAATATTTGGTTCTCCTTTGCTGCTTGTTT
GGGCTGACCAGAACTGCTCCTGCCAAGAAAGAAGATAAATTACCTGTCCG
ACTGTATGGAGAAAGTGGCCGCGAGATGAATGAAAAGAAAGAGGCAATGC
ACTCAGGAAAGGATAGTGTTGCTGAAAAAGAAGAAGGAAAATTGAAGGCA
AAGAAAGATGCGGATGAAGATGTTCACAATTTTTTGAAATCTCAATCGTT
GCCATTCATGTTCCAAAAGAAAGATGAAATACCTTTCCATTTCAAGAAAA
ACACACTGCCGTTCCTTCACATGAAGAAAGAATCGATTCCGTTCCATTTC
CGCAGAGAAAACATACCGTTCCATTTCCGCAGAGAAAACATTCCGTTTCA
TTTCCGCAGAGAAGCATTGCCGTTCGCATTCAGTCGTTCACTCGAAGAAG
AGGAAATCCCTTTCCATTTCAAAAAGAAAGAATTTCCATCTTTCCACATT
GGGAAGAAAGAGTTTCCAGTTTTCCACTTTGGGAAGAAAGATGAAATCCC
TCTCTTCCACAGCAAGAAGACAGTTCTTTATCCAGAAGTTGACGAAAACG
AAGTGCTGCAAATGCTCAACAGTCTCAGTGACGCCCAATCACCCTACCAC
AGAATTTTCCAAAGACGTGAAGCGAATCCTTTATATGCAAATATTGGAAG
GTACGGTCGTCGCTCGATTCCCCGATTGAATCGATATGGGAAGCGTGCGG
TATTCTTGTCAGATGTAATGGACGAGCGCAAACCTATACCTCTTCAACAA
GCCTTCAACCTTCGATTACCGTTGTACCAGAAACGGGATGGCGCTCTCCC
CTTACCTTACGCTTTCGACAAGAAAAGAGAGTCCACACAACGCTTCGGTA
GAGATTATCTCAAATTGGGGAAAACTAAAAACTCTATGAAAAAAATCGTC
GAGCTGCAATTTACTCCTTTCTCTCGAAGATACGGGAAATAACTTTTAAT
ATTCAAATTATTAATTCTAGTATTAAAAGGACAAAGCGCAGTGCGTATTT
TTTATTTTTCAAGGGCAGCATAGATGAGAGATTGACTTTAATCATGACAA
ATTTTGTATAATAATAAATACCTATTTGTTGAATTTAGGAAAAAGTTTTT
GCACAATGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047281-exon-scaffold_124-1575043694:27365..27410 | TCONS_00047281-exon-scaffold_124-1575043694:27365..27410 | Clytia hemisphaerica | exon |
| TCONS_00047281-exon-scaffold_124-1575043694:25047..26219 | TCONS_00047281-exon-scaffold_124-1575043694:25047..26219 | Clytia hemisphaerica | exon |
| TCONS_00047281-exon-scaffold_124-1510915933:27365..27410 | TCONS_00047281-exon-scaffold_124-1510915933:27365..27410 | Clytia hemisphaerica | exon |
| TCONS_00047281-exon-scaffold_124-1510915933:25047..26219 | TCONS_00047281-exon-scaffold_124-1510915933:25047..26219 | Clytia hemisphaerica | exon |
| TCONS_00047281-exon-scaffold_124-1491911889:27365..27410 | TCONS_00047281-exon-scaffold_124-1491911889:27365..27410 | Clytia hemisphaerica | exon |
| TCONS_00047281-exon-scaffold_124-1491911889:25047..26219 | TCONS_00047281-exon-scaffold_124-1491911889:25047..26219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_124 | supercontig | scaffold_124:25047..27410 - |
Blast
The following BLAST results are available for this feature:
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