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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047284 ID=TCONS_00047284|Name=TCONS_00047284|organism=Clytia hemisphaerica|type=transcript|length=3395bpRun BLAST on NCBI protein sequence of TCONS_00047284-protein >TCONS_00047284-protein ID=TCONS_00047284-protein|Name=TCONS_00047284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp MSSDDDEKDPLIAGSEGINYDSTISKYTRTPSVESYILTDKERKRSIRVIRun BLAST on NCBI transcript from alignment at scaffold_124:75342..81209- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047284 ID=TCONS_00047284|Name=TCONS_00047284|organism=Clytia hemisphaerica|type=transcript|length=5868bp|location=Sequence derived from alignment at scaffold_124:75342..81209- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_124:75342..81209- >TCONS_00047284 ID=TCONS_00047284|Name=TCONS_00047284|organism=Clytia hemisphaerica|type=CDS|length=16995bp|location=Sequence derived from alignment at scaffold_124:75342..81209- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047284 vs. Swiss-Prot (Human)
Match: MFSD8 (Major facilitator superfamily domain-containing protein 8 OS=Homo sapiens GN=MFSD8 PE=1 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 4.324e-93 Identity = 183/483 (37.89%), Postives = 273/483 (56.52%), Query Frame = 2
Query: 1184 KERKRSIRVIYANAFIGSISFSIVMASLWPFLQKLDHEVSESFLGWVNAGYSFAQMVSGIFMGYWCEKRNAKEPIFVSIILLAGGSLLYSYAETFGKKGIWVVLGGRVLLGTXXXXXXXXXXXXXQLSTLEERSGVMAQLALWQAIGFSIGPAFQAMAKPIGSNEYEIKAIKMYINVFTLPGFFMIILSIINFVLVALYFKENVHAKEKMKKESRRLRRQSTSFEP-------LDTTIVFTCLLLWFIALSIFALNETILSPVVMNEYAWTRKQTVFNTSILLSVAGVIAIICFLAIAPLEKKFGGKNVLAFGYFLMLVGFVIYLPWGPGYPKLTHEVL-NFQNGTQVVNEVV--------EGDG----GCPYHYDWCRNTPKLHFAQFLTAATLVGIGYPIAAVLLSTLYSKVIGPFPQGKYMGWLTGTGSLARVVGPIYVTAVYQKGGIRWTSVSICLLLTITMCIFAFFWKRLVPYNERF 2572
K R RSIR++Y F+ S+ FS+VM S+WP+LQK+D SFLGWV A YS QMV+ G W R KEP+ VSI++ + LY+Y + +L R LLG AG VAV R+ A ++L+ER+ MA +++ QA+GF +GP FQ +G IK+ IN++T P L I+N +L+ +E H + ++ + + + S + +D V +L+F+ L IFAL ETI++P+ M+ YAWT++Q V I+L+ GV A++ FL + L KK G + +L G ++ VGF I LPWG +PK+ E L N E++ E D GC WC TP +H AQFLT+A L+G+GYP+ ++ TLYSK++GP PQG YMGWLT +GS AR++GP++++ VY G RW +C ++ +T+ + +KRL+ + R+
Sbjct: 33 KSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPTADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILRE--HRVDDSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERPTGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLIALSVRY 513 The following BLAST results are available for this feature:
BLAST of TCONS_00047284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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