TCONS_00047286 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047286
Unique Name	TCONS_00047286
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1188

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_124:117558..122890-

transcript sequence

>TCONS_00047286 ID=TCONS_00047286|Name=TCONS_00047286|organism=Clytia hemisphaerica|type=transcript|length=1188bp
AGAATATATAATGTTTTCTATTGATCGTAAAAGAAAACTATCTTCAAGCA
AAAGAAATAATACAGAAAGTAGTGATGAAGAACTTGAGGACTTTTTGTTT
GGAAATACCAATTTCAAAACAGCATCAAAAGATGAAGTGATTTCTGATAT
TAATGTTCAAGGGGAGACAGAAACACTTTTACCTTTCTCCATAAGTACAA
AACCAAGCCACTTTGATGGTGAGAAATTGGTTGAAGAAGATACTGAAAAG
AAACAAGAGCAACAACAGGATGAGGTTCAATTACTTGACCCTTTTGAAAA
GAAAGCTGCTTGGGAAGATCCTGATGATGACCAGATACAGGTTGATTTGA
atgagaaaaagaaattcaagagGATGAGAACCAACTATCAAGAAACAAGT
GTCAGTGGAAAAACATTTCAGAAGAGGCTCAAGGAAAGATACGAGCGAGT
TTTACCTGCACCAGCTTGGGCAGATATTTCTAATGTTGAAAAAAAGGATG
ATGAAGATAAACTCTTCAATACTGCATCagatcttttggaaaaatcGTCA
AGTTTACCAAGTGGGAAAATACAATTGACAAGAAAGTTAAATCTGAACAA
GAAACAACCAGACGGTTTGAGCATCACTTCTCTTGGATTTCATCCATCAG
CTAAGATTGCTTTTACTGCTTCATCTGGTAAGAGGCTGACTATATTTCAG
gCTGATggggaagaaaacaaaaaactacAAAGTGTATTTGTGCGAGATTT
CGCGATTACCTCAGCAGCTTTTACTGATGGTGGCTCAAAAATCCTCATGA
CTGGTGACAAATCGCGATACATTATATTTGATCTTCTTGCAGGGAACATT
ATTGATGTCCCAGGGTTAAGAGGCAAGAAAGGGTTGAATCTTGACAAATT
TACTATTTCACCCGATGGGAGCGCAGTAGGATTTCTCGGAGATTATGGAT
ATTTACATTTCGCTTCAGTAGAGTCATGTCAGTATATGTACAGTTTGAAA
ATGAATGGTACAATTTCAGCCGCAAcatattcaaaaaaatcaaaccaaat
ctaTACGACAGGAGGTGACGGAGAAGTGTATATATGGGATGCTCGCAATA
GAAAGTGTTTACATAGATTTATAGATGATGGATCTATTGGCAGTACATCA
ATTGCATGTTCCAACAATGGGAAATTCTTAGCTGTGGG

Run BLAST on NCBI

transcript from alignment at scaffold_124:117558..122890-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047286 ID=TCONS_00047286|Name=TCONS_00047286|organism=Clytia hemisphaerica|type=transcript|length=5333bp|location=Sequence derived from alignment at scaffold_124:117558..122890- (Clytia hemisphaerica)
AGAATATATAATGTTTTCTATTGATCGTAAAAGAAAACTATCTTCAAGCA
AAAGAAATAATACAGAAAGTAGTGATGAAGAACTTGAGGACTTTTTGTTT
GGAAATACCAATTTCAAAACAGCATCAAAAGATGAAGTGATTTCTGATAT
TAATGTTCAAGGGGAGACAGAAACACTTTTACCTTTCTCCATAAGTACAA
AACCAAGCCACTTTGATGGTGAGAAATTGGTTGAAGAAGATACTGAAAAG
AAACAAGAGCAACAACAGGTGATTTAAATAAAAAAAGAAGAGTTTTTAAA
AATTCTTGTTAACCTTTTTATGCAATGCTTCACAATAGGTTAATAAATAC
TAATCTTCAAAAAAAGTAGATTTTTATGAACCAAATTTCACTTTTTCTCA
TTTATTACCTGACAAATGTCTAGAGGACATGAGACTCAGAGTACTAATAT
ATGTAATTGTTGCTTTTTATGATTATAACTCCTTGCAGTTGAGAACTATG
GTATTGAAACATTTACAAACTCAATATAGAGTTTGTTTATAATTTATATG
TAAATATTTTATCCATCACTCTTGTTTTTCAGGATGAGGTTCAATTACTT
GACCCTTTTGAAAAGAAAGCTGCTTGGGAAGATCCTGATGATGACCAGAT
ACAGTAAGAATCATTCTTGTTCTTGTTTTTCATTTTTATTGTTTTTTATT
TTATGTTTACATTTGATTTGACATGCAGAAAATAACAATTCCTTGTTCAA
TTATTCTTGATTGTTGATTAAACATGAATATTTTGTTCCATTTATAGGGT
TGATTTGAATGAGAAAAAGAAATTCAAGAGGATGAGAACCAACTATCAAG
AAACAAGTGTCAGTGGAAAAACATTTCAGAAGAGGCTCAAGGAAAGGTAC
TATGGTATATTAAATAAACAAACACTAGAATTTATGGCTGATGTCTTTTA
GACAAAATAAAATCTCAATCGCTTTCTCTTTCACCATAGATACGAGCGAG
TTTTACCTGCACCAGCTTGGGCAGATATTTCTAATGTTGAAAAAAAGGAT
GATGAAGGTAAAATAAATAATTCTGTGGAATGTTTGAATTTCTTATTTTA
TGTATACAATCTAATTTGTTTTTAGTTCTTAATTGTGCCTTCCCAAGCGA
TTTTAAGTACCTAAAAATTTGACCGGTCTTTAGACTGTCTTTTGTTAAGG
GCCAGTAATTGACTGGTAAAAATCTGGGAGAAGGTCCCTGCAAGTATAGC
TAAATTAGCAGCTATTTTGAGAGCATCTATTTCAACAAATAAATCTTCTA
GTTGTCTTGATGTAATGGTTACTAACAAACACCAGCAAACACTAACAAAC
AGCCAGGACCAGTCTAACAAGTGGCAATTTGTGTATAAAAACAGCCAGGG
CGGTTCAAAATCAGATTTATAGAAGGTCTGAAGGCCAATTTAAAACAATT
ACTTTACTGCTGCTAGACCGTTCGTAATACCGCTCCAGGGCCAGTCCACT
TTTCAGATAATTTAATCCCTTTGGGAATCACCATTGGGGATGTTTTATAA
GCAATGTTATTTAATTCAATATTTCCAAAAAAGTAATTGTATTGTTCTTT
TTAGATAAACTCTTCAATACTGCATCAGATCTTTTGGAAAAATCGTCAAG
TTTACCAAGTGGGAAAATACAATTGACAAGAAAGTTAAATCTGAACAAGA
AACAACCAGACGGTTTGAGCATCACTTCTCTTGGATTTCATCCATCAGCT
AAGATTGCTTTTACTGCTTCATCTGGTAAGAGGCTGACTATATTTCAGGT
AACTTTTTCTAATTTTGTTGAATTCTTTTGCACGCAAATACCATGGAAAC
AACCTGATTTTAAGTGACTTTTTATAGACATACACTTTAAAGTAAAGAGA
ACATGGTAATTTGTAAAATTATTATCAATCAAGTGCATTAAAATAGTCTG
AATTAACCCAAGATTTGCCAAAGTAGAAGATGACAGACACAAAAATAAGT
TACTTTACTTTTTTTAGGCTGATGGGGAAGAAAACAAAAAACTACAAAGT
GTATTTGTGCGAGATTTCGCGATTACCTCAGCAGCTTTTACTGATGGTGG
CTCAAAAATCCTCATGACTGGTGACAAATCGCGATACATTATATTTGATC
TTCTTGCAGGGAACATTATTGATGTCCCAGGGTTAAGAGGTAACACAATG
GATTAGTACAGTCAACCTAATACTTACATGCTGAAAGTTTCTAGAAAAAT
GTTAAAGTTTGTCTCAATTAGCTTTAATTGTTCTAAATAAGCACCATTAA
AAATCAAGGACACAGTTTACTTGACTTAAATCATATCTATTGGATATTTT
TCGATCCAAAAGAATTATTTTGAGGTTTGGAGTTGCGTTATTTAATGTTT
ATTTCCCTCCTAATAGGCAAGAAAGGGTTGAATCTTGACAAATTTACTAT
TTCACCCGATGGGAGCGCAGTAGGATTTCTCGGAGATTATGGATATTTAC
ATTTCGCTTCAGTAGAGGTAAGATCTCTTATTAAGAAGTGATGATTCTAT
TTGTGACTTTCACAATTTTTACTTGCTAAAATTTAAGAAATTGTTGCCTT
GTCAATATAAGCTCTCACCAAACCTAGAAAACTAACCCCTAATTGTTTAA
AATGCTCATTTTCAGAGAAGATATGTCCTAACAATTAAAAAATTGATTCT
AGTCAAAATTAGAAAATCGCTTCACTCATCAAAATGATTTTTTTTCCAAA
CTAGTTTTTCTTAGGACTATTGCTCTTCAACAAAATTAGCCCTTAAGTAC
GAAATATGAAATTGTATAACATGGCATACAACAGTGGGACTTTGACTTTT
TTCTTTATTTAGGTCTACAAACTTTGGCGAGCAAAAACTTTCACAAGGTC
GAAAAATGTTTTGAGGAAAAAATATTGTTTTTTTTTTGCAAGCAAGAAAC
TTTCGCTAACCGTTGGATAAACATGACAAAATTTAAAACATACTTGAATT
ATTCATTGATTATTTATTGCAAATTCAAAGTTTTGCTAGATTTTCAACTT
TTTAAAGAATCTTGTGCGTGTATCAACTTTCGGGAATCACCTAATTAAGA
CATTAACTTTCATGAAAAAGGCCTAAACACGATTTCATTTTAAACTTTGG
CATTTGCTTTGTTTTTAGTCATGTCAGTATATGTACAGTTTGAAAATGAA
TGGTACAATTTCAGCCGCAACATATTCAAAAAAATCAAACCAAATCTATA
CGACAGGAGGTAAATTACTTTTTTAATATTAAAATTTTCAATAGGAACTG
TACTATATCAACTAAATATTCTATATTTCAACTCAAATTCATTAATTGAT
TTTAGGTGACGGAGAAGTGTATATATGGGATGCTCGCAATAGAAAGTGTT
TACATAGATTTATAGATGATGGATCTATTGGCAGTACATCAATTGCATGT
TCCAACAATGGGAAATTCTTAGCTGTGGGGTATGTACTCATTATAATTTA
GTGACTGGTGATGACCTCATTAATTTCATTTATTTACAATAAATGTGACA
AGATTAGTGAATAGTATCATAACATTTCCCTTAGCTCGAAAAGTGGCGTT
GTCAACATCTACAACAATGAAGGTATTGAGAATTTCAAAACACCAAAACC
TGTCAAAACGATGATGAACCTCAAAACTGAAATCGATGGAACTGCTTTCA
ACTCAACTAGGTACAATTAAATGAATTATGTACACAAAAACAAATATTAA
TTCATTTTAGATACTTTTAGATAGTTTGACAGTAAGTAAGAAAGTCTGCA
ACCGCAGTCAGAGGCCACCCGAAGGCTCCTCTTTCGATAGCTATCTACCC
ATTGGTATGGGAGGCTGTCACTCTTTTTCCCTGGATTGCTCCACATACAT
ACCCTTGATCTTTCTCTTAATTGCTGAGCATCAAGCAGAGAGGCGTCAAG
TACCATTTTGGGAATCTTTGGTATGACCCGGCTGGGGGTTGAACCCACAA
CCTTGTGAATCGTAGCCTGTTACTCTACCACTGCACTACAGTCGTTTCAC
GGTCGTTTGACAGTAAACTTCCTCATTGTCAGTAGGGAAGTTTTGGTCAA
ATGATTAAAGGGACATAAAAGTACTGACGAAATTTATAAGCAAANAATTG
TTTAAAATGCTCATTTTCAGGGAAGATATGTCCTAACAATTAAAAAATTG
ATTCTAGTCAAAATTAGAAAATCGCTTCACTCATCAAAATGATTTTTTTT
CCAAACTAGTTTTNCGGGATACGAAATCAAAGCAAATGTCACATGTCAAA
ATGAAAATAAAAAATATGGATAATTTTGATTGTTTCAATTGTTTTACAAG
TTTGTTTTGGACACGTGATTTTAATTGTTCTCTTTAATGACACGTAGTTC
GCGCAATGTTTACATTTTACTACTTTTATGTCCTTTTAACAAGTAAAGCC
CTGTCAAGTTTCACACAACCCAGTCACAGCAATTATAATTATTAACAATG
CCGTTAATTTATAATTAAAAAAACATTTCTTACTCTTTGTTTTAGCGAAA
TCCTGGTCACATATACATCACATACGAAGCATGCAATCAAAATGGTAATA
NAAACTAGTTTTTCTTAGGACTATTGCTCTTCAACAAAATTAGCCCTTAA
GTACGAAATATGAAATTGTATAACATGGCATACAACAGTGGGACTTTGAC
TTTTTTCTTTATTTAGGTCTACAAACTTTGGCGAGCAAAAACTTTCACAA
GGTCGAAAAATGTTTTGAGGAAAAAATATTGTTTTTTTTTTGCAAGCAAG
AAACTTTCGCTAACCGTTGGATAAACATGACAAAATTTAAAACATACTTG
AATTATTCATTGATTATTTATTGCAAATTCAAAGTTTTGCTAGATTTTCA
ACTTTTTAAAGAATCTTGTGCGTGTATCAACTTTCGGGAATCACCTAATT
AAGACATTAACTTTCATGAAAAAGGCCTAAACACGATTTCATTTTAAACT
TTGGCATTTGCTTTGTTTTTAGTCATGTCAGTATATGTACAGTTTGAAAA
TGAATGGTACCATTTCAGCCGCAACATATTCAAAAAAATCAAACCAAATC
TATACGACAGGAGGTAAATTACTTTTTTAATATTAAAATTTTCAATAGGA
ACTGTACTATATCAACTAAATATTCTATATTTCAACTCAAATTCATTAAT
TGATTTTAGGTGACGGAGAAGTGTATATATGGGATGCTCGCAATAGAAAG
TGTTTACATAGATTTATAGATGATGGATCTATTGGCAGTACATCAATTGC
ATGTTCCAACAATGGGAAATTCTTAGCTGTGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030123	XLOC_030123	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_124	supercontig	scaffold_124:117558..122890 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.49467e-09	0	0	0	0	0	0.000603273	1.026e-05	0	3.77204e-09	0	0	0	0	0	0	2.78731	0.0080164	1.34388	1.34696e-06	0	9.61263e-07	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00047286 vs. Swiss-Prot (Human)
Match: UTP18 (U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens GN=UTP18 PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.248e-57
Identity = 109/308 (35.39%), Postives = 184/308 (59.74%), Query Frame = 2

Query:  290 PFEKKAAWEDPDDDQIQVDLNEKKKFKR-MRTNYQETSVSGKTFQKRLKERYERVLP-APAWADISN------VEKKDDEDKLFNTASDLLEKSSSLPSGKIQLTRKLNLNKKQPDGLSITSLGFHPSAKIAFTASSGKRLTIFQADGEENKKLQSVFVRDFAITSAAFTDGGSKILMTGDKSRYI-IFDLLAGNIIDVPGLRGKKGLNLDKFTISPDGSAVGFLGDYGYLHFASVESCQYMYSLKMNGTISAATYSKKSNQIYTTGGDGEVYIWDARNRKCLHRFIDDGSIGSTSIACSNNGKFLAV 1186
            P +KK  W D +D+  ++      +F++ M  N  E+ +S    +KRLKE ++  +   PAWA+ +        E ++DED L     + +  S+SLP G +++    + N ++P    I+S+ FHP A+I   A     +++FQ DG+ N K+QS+++  F I  A F+  G ++L T   S+ + ++D+LAG +I V  +RG K   +  F +SPDGS +   G  GYLH  ++++ + + S+K+NG ++A+T+S  S ++Y + GDGEVY+WD  +RKCL+RF+D+GS+   SIA S NG+++A 
Sbjct:  135 PPQKKPVWVDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHAMGGVPAWAETTKRKTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPGAQIVMVAGLDNAVSLFQVDGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVAC 442

The following BLAST results are available for this feature:

BLAST of TCONS_00047286 vs. Swiss-Prot (Human)

BLAST of TCONS_00047286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UTP18	1.248e-57	35.39	U3 small nucleolar RNA-associated protein 18 homol...	[more]

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TCONS_00047286 (transcript) - C. hemisphaerica