TCONS_00047291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047291
Unique NameTCONS_00047291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047291 ID=TCONS_00047291|Name=TCONS_00047291|organism=Clytia hemisphaerica|type=transcript|length=1820bp
AGCTTTCTACAGGAACGATGTTGCCATCCCGCATCTTGATCGAGAAATCG
gTGATTTCATTGTGAACGCTGGGGCAGCTACTGACTCTTCAGTcgaaaaa
attaaagtaaaagtaaaactACGTGTCGATAAGAATGGTTGTTTCTCAGT
TTGCAGTGCAACCATGGTTGAAACATTACCTCAGAGTGAGGCTCCCATCG
AGGAACCTATGGAAACAGATACCTCGACACCCGTTGTCAATGGTgataat
aaagaaaataatgataaacctgctgaatcagcagaaactCCAAGTAAAAC
TGAAGAAGAACAAAAGGGTCAAGACCAAGCGAAGAAGTCTCCTGAAGAAG
CAACCACAGACAAGAAAGAGGACAAGTCAGACGACGTCAAGAAACCAGAA
gcgaaaaaagcaaagaaattgACCAAATCAACTGATTTGAAAATTGACCC
AATCCAAACAGGGCTTACTGCTGAAGACATAGCGAATCTCGTTTCTATCG
AACAAGAGTTACAATTCCATGCCCGCGTTGAAAAAGAACGAGCTGATGCT
AAAAATAATTTAGAGGAATATATTTATGCGATGAGGGATAAACTGTCCGG
TGATTTAGAGAATTATGTTGAGGAAGGACAACGAGATGAATTTTCAGTTC
AATTGGAAGATGGAGAATCATGGCTGTATGGTGATGGAGAAGATCTTCAA
AAACAAGCTTACATCGATAAATTGGAAGGACTAAAGaaaataaGTCAACC
AATGGAAGATCGTTGTGTGGCACACCAAGCCATCCCCGGAGCAATTGACA
ACTTTGGAAAAGCCATGACACACTATAAAAAGATACTTGAACAATATGAA
AACAAAgATGAAAAATATGTACACATAGAAgcggaagaaatgaaaaaagt
gaagaataaAGTGGAAGAGAAATTCAATTGGTTCAACGAAAAACTGAACG
AAATGGGGAAGTGTCCAAAAACGAAAAACCCGCCTGTCTATCCCTCACAG
ATTGAAACCGAGAAAAAGTTAATGCAAACATTTTGTGATCCTATCGTCAA
CAAACCGAAACCGAAAGTGGAGCCACCGAAAGACGAACCCAAAAAAGAAG
GAGAAGAGGGAGCAAAACCGGAAGaaacgaaaaacgaaaaaactaCGGAA
CAACCGCAAACTACGGAAAACATGGAAACAGACACTCCTAAACCGGAAGG
CAAATCTGAAGATTTGGGAATGGAAGTCGATTAAAGACTCTTGTCTTATT
TCTTTATTTGTCTGGTTTCTCGCGTCAAAATAGGATATTACTTATAAGGA
ATTTGTATTTATATATTGTATAAATCGAGAAGTTTATTTTGCCCACCGTT
TTTGTTAACCGTTAGGAAATTCAAAAGGTCGATCAAGTGGAACAAACGAT
TGATTGATTTGCTACTATATTTTTCTTCAAGATCACGAGTCTGCTGTTTT
ATGAACAAGTTCATTCTAAAATTGTGATAGATGCCTTTTCTTTGATCAGT
GATGACTTTTCTTTGATCATGTTCACGACGAGCCCTTTTCCGTGAGATGC
TGTTTTCACAAATAGAAAACTATCCTGCTCTGTACcagtttttgataaaa
tatatacttagatttgattttttttaatttgactaATTTTTTAATCCTTT
AAAATGGTACTACCTCTTCCAAAAAAGATCATAAAATGTTTGTATTAACA
ATCTTACAATTTTCTTTAACTCAAAGTCCTTCCTCAAAAACATTAGCTAA
TAACTTGCAAAACAAGAATTCTACTTTTCATGCAAAGATGGATTGACCGA
TTGTGTCTTAGTGACACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_124:138679..142198-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047291 ID=TCONS_00047291|Name=TCONS_00047291|organism=Clytia hemisphaerica|type=transcript|length=3520bp|location=Sequence derived from alignment at scaffold_124:138679..142198- (Clytia hemisphaerica)
AGCTTTCTACAGGAACGATGTTGCCATCCCGCATCTTGATCGAGAAATCG
GTGAGATAAATTTAGCTTTTTCACTACTTGACTAATTTGGCGTAAAAGTT
CTTAGCAGTATCAGTTTTACTTTTGACTTAATTTTTTTCATTTTGTTCAT
TTTCAGGTGATTTCATTGTGAACGCTGGGGCAGCTACTGACTCTTCAGTC
GAAAAAATTAAAGTAAAAGTAAAACTACGTGTCGATAAGAATGGTTGTTT
CTCAGTTTGCAGTGCAACCATGGTTGAAACATTACCTCAGAGTGAGGCTC
CCATCGAGGAACCTATGGAAACAGATACCTCGACACCCGTTGTCAATGGT
GATAATAAAGAAAATAATGATAAACCTGCTGAATCAGCAGAAACTCCAAG
TAAAACTGAAGAAGAACAAAAGGGTCAAGACCAAGCGAAGGTAAGGACTG
ACTTATCGTAGTTAGTATGATAACCTCTTCGTGATCCGCATATTTTGGGA
GAAAAAGAGAAATTATTTTGAGGCTTGTTTGCTTATTTGAACTCTTTATC
ACACTTCCTTTTTACAGAAGTCTCCTGAAGAAGCAACCACAGACAAGAAA
GAGGACAAGTCAGACGACGTCAAGAAACCAGAAGCGAAAAAAGCNCTTCC
TTTTTACAGAAGTCTCCTGAAGAAGCAACCACAGACAAGAAAGAGGACAA
GTCAGACGACGTCAAGAAACCAGAAGCGAAAAAAGCAAAGAAATTGACCA
AATCAACTGATTTGAAAATTGACCCAATCCAAACAGGGCTTACTGCTGAA
GACATAGCGAATCTCGTTTCTATCGAACAAGAGTTACAATTCCATGCCCG
CGTTGAAAAAGAACGAGCTGATGCTAAAAATAATTTAGAGGAATATATTT
ATGCGATGAGGGATAAACTGTCCGGTGATTTAGAGAATTATGTTGAGGAA
GGACAACGAGATGAATTTTCAGTTCAATTGGAAGATGGAGAATCATGGCT
GTATGGTGATGGAGAAGATCTTCAAAAACAAGCTTACATCGATAAATTGG
AAGGACTAAAGGTAATACCCGTGACCGGTGTATCGTTTCTGAAGGATCCT
TCTTGTCATTGAATTACTATTGATGGGCTGTTTTGTTTTGTTAAAACATC
TTCTTTTAAAGTCACTGGAATCTCTCAAACCTCAAACCTCCTTGTGTCGC
TTGAAGTTAGGATTGACATATACTGGAATCACTCTTACCTTAAGGGAAGA
AATTTTCGCGGAATTCAATTTAGTGGTTTTTTAAAAAATCTGCGAAATTA
AATTCCGTGAAACACGAGGATTTAAAAAATCACCCCTAAAATTGGTCTTT
TTAGGACAAAATAGGCTATATTTTGTAACCATAAAAATTCCTGTGTTTTC
CAAACAGCTCGAAAATTTTAAAAATAACTAAATTACTCATTTAAATTTTT
TGTAGAAAATAAGTCAACCAATGGAAGATCGTTGTGTGGCACACCAAGCC
ATCCCCGGAGCAATTGACAACTTTGGAAAAGCCATGACACACTATAAAAA
GATACTTGAACAATATGAAAACAAAGTAAGAAACTTCTCTCAACTAAGAG
TCCCACTTTAGATATTTAGGCTATCAGACCGTGCCATGTTATATGTGAAC
TTAAAATAATTTCCATGTACTAGTACTCATTTCTCAATCAAAATTCTTTG
TCAAGTTGTTACCGTTCACGTTCTTCTTCTTCTTTTAGGATGAAAAATAT
GTACACATAGAAGCGGAAGAAATGAAAAAAGTGAAGAATAAAGTGGAAGA
GAAATTCAATTGGTTCAACGAAAAACTGAACGAAATGGGGAAGTGTCCAA
AAACGAAAAACCCGCCTGTCTATCCCTCACAGATTGAAACCGAGAAAAAG
GTAACCAATTTTTTCACATTTTGCGATCGCTTGATATACACGGTGTGATG
TCAGAACATAACAAGATACTTACACCATTGACGTAACTGCCAGAGATTTG
GGCTCCAGCGTATTTAGGGCCTTTGATCTCGCTTTTGAAAACTGAACCTT
CGATGTTTCTCTTAACCTCTCAGGGGGGGGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCTTATATTGAAATGTCTTT
AGCACACAGGTCCACAGCATACCTCAACAGAGCTAATATTTTAGCCTTCC
GTCTCTTTCTCTTGATAGTTAATGCAAACATTTTGTGATCCTATCGTCAA
CAAACCGAAACCGAAAGTGGAGCCACCGAAAGACGAACCCAAAAAAGAAG
GAGAAGAGGGAGCAAAACCGGAAGAAACGAAAAACGAAAAAACTACGGAA
CAACCGCAAACTACGGAAAACATGGAAACAGACACTCCTAAACCGGAAGG
CAAATCTGAAGATTTGGGAATGGAAGTCGATTAAAGACTCTTGTCTTATT
TCTTTATTTGTCTGGTTTCTCGCGTCAAAATAGGATATTACTTATAAGGA
ATTTGTATTTATATATTGTATAAATCGAGAAGTTTATTTTGCCCACCGTT
TTTGTTAACCGTTAGGAAATTCAAAAGGTCGATCAAGTGGAACAAACGAT
TGATTGATTTGCTACTATATTTTTCTTCAAGATCACGAGTCTGCTGTTTT
ATGAACAAGTTCATTCTAAAATTGTGATAGATGCCTTTTCTTTGATCAGT
GATGACTTTTCTTTGATCATGTTCACGACGAGCCCTTTTCCGTGAGATGC
TGTTTTCACAAATAGAAAACTATCCTGCTCTGTACCAGTTTTTGATAAAA
TATATACTTAGATTTGATTTTTTTTAATTTGACTAATTTTTTAATCCTTT
AAAATGGTACTACCTCTTCCAAAAAAGATCATAAAATGTTTGTATTAACA
ATCTTACAATTTTCTTTAACTCAAAGTCCTTCCTCAAAAACATTAGCTAA
TAACTTGCAAAACAAGAATTCTACTTTTCATGCAAAGATGGATTGACCGA
TTGTGTCTTAGTGACACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030124XLOC_030124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047291-exon-scaffold_124-1575043694:142149..142198TCONS_00047291-exon-scaffold_124-1575043694:142149..142198Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1575043694:141759..142042TCONS_00047291-exon-scaffold_124-1575043694:141759..142042Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1575043694:141138..141539TCONS_00047291-exon-scaffold_124-1575043694:141138..141539Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1575043694:140624..140743TCONS_00047291-exon-scaffold_124-1575043694:140624..140743Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1575043694:140299..140460TCONS_00047291-exon-scaffold_124-1575043694:140299..140460Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1575043694:138679..139480TCONS_00047291-exon-scaffold_124-1575043694:138679..139480Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1510915933:142149..142198TCONS_00047291-exon-scaffold_124-1510915933:142149..142198Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1510915933:141759..142042TCONS_00047291-exon-scaffold_124-1510915933:141759..142042Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1510915933:141138..141539TCONS_00047291-exon-scaffold_124-1510915933:141138..141539Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1510915933:140624..140743TCONS_00047291-exon-scaffold_124-1510915933:140624..140743Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1510915933:140299..140460TCONS_00047291-exon-scaffold_124-1510915933:140299..140460Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1510915933:138679..139480TCONS_00047291-exon-scaffold_124-1510915933:138679..139480Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1491911889:142149..142198TCONS_00047291-exon-scaffold_124-1491911889:142149..142198Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1491911889:141759..142042TCONS_00047291-exon-scaffold_124-1491911889:141759..142042Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1491911889:141138..141539TCONS_00047291-exon-scaffold_124-1491911889:141138..141539Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1491911889:140624..140743TCONS_00047291-exon-scaffold_124-1491911889:140624..140743Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1491911889:140299..140460TCONS_00047291-exon-scaffold_124-1491911889:140299..140460Clytia hemisphaericaexon
TCONS_00047291-exon-scaffold_124-1491911889:138679..139480TCONS_00047291-exon-scaffold_124-1491911889:138679..139480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:138679..142198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.63094e-10	4.39595	25.0809	15.7364	28.5893	29.6902	0.000648588	0	12.9816	0	0	0.441958	4.16334e-09	0	4.68262	0	16.5019	0	0	0	1.00426	0	103.16	97.8615	0	0	0	0
Blast
[Close]
BLAST of TCONS_00047291 vs. Swiss-Prot (Human)
Match: HS74L (Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 3.243e-47
Identity = 126/355 (35.49%), Postives = 191/355 (53.80%), Query Frame = 2 
Query:    2 AFYRNDVAIPHLDREIGDFIV-NAGAATDSSVEKIKVKVKLRVDKNGCFSVCSATMVETLPQSEAPIEEPMETDTSTPVVNGDNKENNDKPAESAETPSKTEEEQKGQDQAKKSPEEATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXID-PIQTGLT---AEDIAN-LVSIEQELQFHARVEKERADAKNNLEEYIYAMRDKLSGDLENYVEEGQRDEFSVQLEDGESWLYGDGEDLQKQAYIDKLEGLKKISQPMEDRCVAHQAIPGAIDNFGKAMTHYKKILEQYENKDEKYVHIXXXXXXXXXXXXXXXFNWFNEKLNEMGKCPKTKNPPVYPSQIETEKKLMQTFCDPIV 1048
            AFY N   +P+ D  IG F + N    +D    K+KVKV  RV+ +G FSV SA+++E         + PMET+TS      +NK+N DK           +EE   +  A+ +PEE            V   + +  + L K     ID PIQ+ L     +D+ N  +  E ++    ++EKER DAKN +EEY+Y  RD+L    E ++      + S  LED E+WLY DGED  KQ Y+DKL+ LKK  QP++ + + H+  P A+++ GK +    K++E Y NKDE+Y H++  EM+KV+  + +  +W N K+N   K   T++P V  S+I  + K +  FC+PI+
Sbjct:  444 AFYTNLHEVPYPDARIGSFTIQNVFPQSDGDSSKVKVKV--RVNIHGIFSVASASVIEKQNLEGDHSDAPMETETS---FKNENKDNMDKM-------QVDQEEGHQKCHAEHTPEEEIDHTGAKTKSAVSDKQDRLNQTLKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDRLGTVYEKFITPEDLSKLSAVLEDTENWLYEDGEDQPKQVYVDKLQELKKYGQPIQMKYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPTEMEKVEKCISDAMSWLNSKMNAQNKLSLTQDPVVKVSEIVAKSKELDNFCNPII 786
The following BLAST results are available for this feature:
BLAST of TCONS_00047291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HS74L3.243e-4735.49Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HS... [more]
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