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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047311 ID=TCONS_00047311|Name=TCONS_00047311|organism=Clytia hemisphaerica|type=transcript|length=1507bp
TTACTTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGT
CGACTGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaa
cgtCAAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACA
ATGTGGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCA
CCTACCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAA
GAGAAAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGG
AAAATGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATG
AGAAAAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGA
AAAAGAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAA
ACGACAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTT
GGCAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAA
GCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAG
GGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGATG
ATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGC
TATTACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTACTACGG
AGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAA
GAACAGCTGATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCT
TGGCAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCA
AGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGA
GGGAAGGTAGCAGACCTTGGCAAGGGTACTATGGTGCAAAGAGGGAAGGC
AGCCGACCTTGGCAAGGCTATAATGGAGTAAAAAGGGCTATAGATCTTCC
CTGGTATGGTGTTAAAAGAGAGGCAGGAAGACCTTCGCTCGGTGCATATA
GTTCCAAAAGAGTTGTCGAGTTGCCATGGTACCAAGCAAAGAAGGAATCA
GGACGTAGTTTTTATGCAGCGAAGAAGGAGGCTTTACCGTGGTATGAAAA
GTTCAGTAAACGTTCGAATACTGAGGAAAACGTTCCTTTTTTCGTACGAG
ATTCTGTTTAGTGTGTGAATTATTCCTCGAGGACTTATAAAAATACTTGG
AAAAATcaatggaaaattttggaaagcttTCCTGGACGTTGATATATAga
gaaattttatattttcaaacacaGCAATTTCAAAAGCAAACTTGAATATT
TAAACTAGGATATAGTCTTTCCTTAGATACGCTTTTTGTGATGAGATTAT
GTGTGTTTTGTATGATTCTAAAATTTCTACAAAAAGCTTTGTCAATCCTA
AATCATG Run BLAST on NCBI transcript from alignment at scaffold_125:90445..92386+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047311 ID=TCONS_00047311|Name=TCONS_00047311|organism=Clytia hemisphaerica|type=transcript|length=1942bp|location=Sequence derived from alignment at scaffold_125:90445..92386+ (Clytia hemisphaerica)
TTACTTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGT
CGACTGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaa
cgtCAAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACA
ATGTGGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCA
CCTACCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAA
GAGAAAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGG
AAAATGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATG
AGAAAAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGA
AAAAGAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAA
ACGACAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTT
GGCAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAA
GCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAG
GGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGATG
ATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGC
TATTACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTACTACGG
AGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAA
GAACAGCTGATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCT
TGGCAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCA
AGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGA
GGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGC
AGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCCGACC
TTGGCAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATC
AAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTACTACGGTGCAAAG
AGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGC
TGATCTTCCTTGGTATCAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAG
GGTATTATGGAGCAAAGAGGGAAGGTAGCCGACCTTGGCAAGGCTATTAT
GGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTATGGAGCGAA
AAGAGTAGCTGTCTTACCCTGGTATCAAGCAAAACGGGAAGGTAGCAGAC
CTTGGCAAGGGTACTATGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAA
GGCTATAATGGAGTAAAAAGGGCTATAGATCTTCCCTGGTATGGTGTTAA
AAGAGAGGCAGGAAGACCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTG
TCGAGTTGCCATGGTACCAAGCAAAGAAGGAATCAGGACGTAGTTTTTAT
GCAGCGAAGAAGGAGGCTTTACCGTGGTATGAAAAGTTCAGTAAACGTTC
GAATACTGAGGAAAACGTTCCTTTTTTCGTACGAGATTCTGTTTAGTGTG
TGAATTATTCCTCGAGGACTTATAAAAATACTTGGAAAAATcaatggaaa
attttggaaagcttTCCTGGACGTTGATATATAgagaaattttatatttt
caaacacaGCAATTTCAAAAGCAAACTTGAATATTTAAACTAGGATATAG
TCTTTCCTTAGATACGCTTTTTGTGATGAGATTATGTGTGTTTTGTATGA
TTCTAAAATTTCTACAAAAAGCTTTGTCAATCCTAAATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047311-exon-scaffold_125-1491911889:90445..91400 | TCONS_00047311-exon-scaffold_125-1491911889:90445..91400 | Clytia hemisphaerica | exon |
| TCONS_00047311-exon-scaffold_125-1510915933:90445..91400 | TCONS_00047311-exon-scaffold_125-1510915933:90445..91400 | Clytia hemisphaerica | exon |
| TCONS_00047311-exon-scaffold_125-1575043694:90445..91400 | TCONS_00047311-exon-scaffold_125-1575043694:90445..91400 | Clytia hemisphaerica | exon |
| TCONS_00047311-exon-scaffold_125-1491911889:91836..92386 | TCONS_00047311-exon-scaffold_125-1491911889:91836..92386 | Clytia hemisphaerica | exon |
| TCONS_00047311-exon-scaffold_125-1510915933:91836..92386 | TCONS_00047311-exon-scaffold_125-1510915933:91836..92386 | Clytia hemisphaerica | exon |
| TCONS_00047311-exon-scaffold_125-1575043694:91836..92386 | TCONS_00047311-exon-scaffold_125-1575043694:91836..92386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:90445..92386 + |
Blast
The following BLAST results are available for this feature:
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