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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047318 ID=TCONS_00047318|Name=TCONS_00047318|organism=Clytia hemisphaerica|type=transcript|length=1648bp
CATAATCTCATCACAAAAAGCGTATCTAAGGAAAGACTATATCCTAGTTT
AAATATTCAAGTTTGCTTTTGAAATTGCtgtgtttgaaaatataaaattt
ctcTATATATCAACGTCCAGGAaagctttccaaaattttccattgATTTT
TCCAAGTATTTTTATAAGTCCTCGAGGAATAATTCACACACTAAACAGAA
TCTCGTACGAAAAAAGGAACGTTTTCCTCAGTATTCGAACGTTTACTGAA
CTTTTCATACCACGGTAAAGCCTCCTTCTTCGCTGCATAAAAACTACGTC
CTGATTCCTTCTTTGCTTGGTACCATGGCAACTCGACAACTCTTTTGGAA
CTATATGCACCGAGCGAAGGTCTTCCTGCCTCTCTTTTAACACCATACCA
GGGAAGATCTATAGCCCTTTTTACTCCATTATAGCCTTGCCAAGGTCGGC
TGCCTTCCCTCTTTGCACCATAGTACCCTTGCCAAGGTCGGCTGCCTTCC
CTCTTTGCACCGTAGTAGCCTTGCCAAGGTCGGCTGCTTTCTCTCTTTGC
TTGATACCAAGGAAGATCAGCTGTTCTTTTTGCTCCGTAATAGCCTTGCC
AAGGTCGGCTGCCTTCCCTCTTTGCTCCATAATACCCTTGCCAAGGTCGG
CTGCCTTCCCTCTTTGCTCCATAATACCCTTGCCAAGGTCGGCTGCCTTC
CCTCTTTGCTCCATAATACCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTG
CTTGATACCAAGGAAGATCAGCTGTTCTTTTTGCTCCGTAATAGCCTTGC
CAAGGTCGGCTGCTTTCTCTCTTTGCTTGATACCAAGGAAGATCAGCTGT
TCTTTTTGCTCCGTAGTATCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTG
CTCCGTAGTAGCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCTCCGTAA
TAGCCTTGCCAAGGTCGGCTGCTTTCTCTCTTTGCTTGATACCAAGGAAG
ATCATCTGTTCTTTTTGCTCCGTAGTATCCTTGCCAAGGTCGGCTGCCTT
CCCTCTTTGCTCCATAATAGCCTTGCCAAGGTCGGCTGCTTTCTCTCTTT
GCTTGATACCAAGGAAGATCAGCTGTTCTTTTTGCTCCGTAATAGCCTTG
CCAAGGTCTAGCCTCTGCTCGCTTGTTCCAATATCCGTCGAAATGTTGTC
GTTTTGCACCGAAATAACTTCCGTACCATGGCCGAGTAGCTACAGCTCTT
TTTCGCCAAGTTGAAAAACTACCAATGTTAAAGAAAGGTGCTTCCTTTTT
CTCATGGACCATTTTACCGGCCTCTTCATTACCGGCTCCACGACTCCATT
TTCCATTTGGGTAGGAGCCAGGTTCATGACTTTCTTTTGCCTCCTTTTTC
TCTTCTTCTACCTTAGCGGTAGCAGTACGTGTCCATTTGCCATTAGGGTA
GGTGCCTGGATTATCTTCGGAAGTTTCTTCTTCAGTAGCTGAGACTCCAC
ATTGTAGGATTATCGTCAAGCAAAATACAGTTAATAACACCAAACCTTGa
cgtttcattttgactatatgTCGAGTCCTTTTCCACTTTACTGTAGCAGT
CGACTCATAAGCTAGGCTCTTAGTTCGGTGTGAGCCCTTAAATGACAA Run BLAST on NCBI transcript from alignment at scaffold_125:90449..92330- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047318 ID=TCONS_00047318|Name=TCONS_00047318|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_125:90449..92330- (Clytia hemisphaerica)
CATAATCTCATCACAAAAAGCGTATCTAAGGAAAGACTATATCCTAGTTT
AAATATTCAAGTTTGCTTTTGAAATTGCTGTGTTTGAAAATATAAAATTT
CTCTATATATCAACGTCCAGGAAAGCTTTCCAAAATTTTCCATTGATTTT
TCCAAGTATTTTTATAAGTCCTCGAGGAATAATTCACACACTAAACAGAA
TCTCGTACGAAAAAAGGAACGTTTTCCTCAGTATTCGAACGTTTACTGAA
CTTTTCATACCACGGTAAAGCCTCCTTCTTCGCTGCATAAAAACTACGTC
CTGATTCCTTCTTTGCTTGGTACCATGGCAACTCGACAACTCTTTTGGAA
CTATATGCACCGAGCGAAGGTCTTCCTGCCTCTCTTTTAACACCATACCA
GGGAAGATCTATAGCCCTTTTTACTCCATTATAGCCTTGCCAAGGTCGGC
TGCCTTCCCTCTTTGCACCATAGTACCCTTGCCAAGGTCTGCTACCTTCC
CGTTTTGCTTGATACCAGGGTAAGACAGCTACTCTTTTCGCTCCATAGTA
TCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCTCCATAATAGCCTTGCC
AAGGTCGGCTACCTTCCCTCTTTGCTCCATAATACCCTTGCCAAGGTCGG
CTGCCTTCCCTCTTTGCTTGATACCAAGGAAGATCAGCTGTTCTTTTTGC
TCCGTAGTATCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCACCGTAGT
AGCCTTGCCAAGGTCGGCTGCTTTCTCTCTTTGCTTGATACCAAGGAAGA
TCAGCTGTTCTTTTTGCTCCGTAATAGCCTTGCCAAGGTCGGCTGCCTTC
CCTCTTTGCTCCATAATACCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTG
CTCCATAATACCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCTCCATAA
TACCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCTTGATACCAAGGAAG
ATCAGCTGTTCTTTTTGCTCCGTAATAGCCTTGCCAAGGTCGGCTGCTTT
CTCTCTTTGCTTGATACCAAGGAAGATCAGCTGTTCTTTTTGCTCCGTAG
TATCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCTCCGTAGTAGCCTTG
CCAAGGTCGGCTGCCTTCCCTCTTTGCTCCGTAATAGCCTTGCCAAGGTC
GGCTGCTTTCTCTCTTTGCTTGATACCAAGGAAGATCATCTGTTCTTTTT
GCTCCGTAGTATCCTTGCCAAGGTCGGCTGCCTTCCCTCTTTGCTCCATA
ATAGCCTTGCCAAGGTCGGCTGCTTTCTCTCTTTGCTTGATACCAAGGAA
GATCAGCTGTTCTTTTTGCTCCGTAATAGCCTTGCCAAGGTCTAGCCTCT
GCTCGCTTGTTCCAATATCCGTCGAAATGTTGTCGTTTTGCACCGAAATA
ACTTCCGTACCATGGCCGAGTAGCTACAGCTCTTTTTCGCCAAGTTGAAA
AACTACCAATGTTAAAGAAAGGTGCTTCCTTTTTCTCATGGACCATTTTA
CCGGCCTCTTCATTACCGGCTCCACGACTCCATTTTCCATTTGGGTAGGA
GCCAGGTTCATGACTTTCTTTTGCCTCCTTTTTCTCTTCTTCTACCTTAG
CGGTAGCAGTACGTGTCCATTTGCCATTAGGGTAGGTGCCTGGATTATCT
TCGGAAGTTTCTTCTTCAGTAGCTGAGACTCCACATTGTAGGATTATCGT
CAAGCAAAATACAGTTAATAACACCAAACCTTGACGTTTCATTTTGACTA
TATGTCGAGTCCTTTTCCACTTTACTGTAGCAGTCGACTCATAAGCTAGG
CTCTTAGTTCGGTGTGAGCCCTTAAATGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047318-exon-scaffold_125-1575043694:91845..92330 | TCONS_00047318-exon-scaffold_125-1575043694:91845..92330 | Clytia hemisphaerica | exon |
| TCONS_00047318-exon-scaffold_125-1575043694:90449..91610 | TCONS_00047318-exon-scaffold_125-1575043694:90449..91610 | Clytia hemisphaerica | exon |
| TCONS_00047318-exon-scaffold_125-1510915933:91845..92330 | TCONS_00047318-exon-scaffold_125-1510915933:91845..92330 | Clytia hemisphaerica | exon |
| TCONS_00047318-exon-scaffold_125-1510915933:90449..91610 | TCONS_00047318-exon-scaffold_125-1510915933:90449..91610 | Clytia hemisphaerica | exon |
| TCONS_00047318-exon-scaffold_125-1491911889:91845..92330 | TCONS_00047318-exon-scaffold_125-1491911889:91845..92330 | Clytia hemisphaerica | exon |
| TCONS_00047318-exon-scaffold_125-1491911889:90449..91610 | TCONS_00047318-exon-scaffold_125-1491911889:90449..91610 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:90449..92330 - |
Blast
The following BLAST results are available for this feature:
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