TCONS_00047323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047323
Unique NameTCONS_00047323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047323 ID=TCONS_00047323|Name=TCONS_00047323|organism=Clytia hemisphaerica|type=transcript|length=213bp
CAGCAGTTTTTATTGGAATCATAAAGGCAAAGGTCAAACAATTGCATTGT
GaccgttttgtcatttttttggcaATGACTTCTTTAAGAAGAGATGCTTT
ATTCTATAGACCTTTGTCAAGAATATATGTCAACCTGAAATATCGGACAA
TAGTTTTTCTATCGACTTCTTTTATTTgtcgagaatgtaaatcaatctgc
tcaagcagacaag
Run BLAST on NCBI

transcript from alignment at scaffold_125:78140..78352

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047323 ID=TCONS_00047323|Name=TCONS_00047323|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at scaffold_125:78140..78352 (Clytia hemisphaerica)
cttgtctgcttgagcagattgatttacattctcgacAAATAAAAGAAGTC
GATAGAAAAACTATTGTCCGATATTTCAGGTTGACATATATTCTTGACAA
AGGTCTATAGAATAAAGCATCTCTTCTTAAAGAAGTCATtgccaaaaaaa
tgacaaaacggtCACAATGCAATTGTTTGACCTTTGCCTTTATGATTCCA
ATAAAAACTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030146XLOC_030146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047323-exon-scaffold_125-1491911889:78140..78352TCONS_00047323-exon-scaffold_125-1491911889:78140..78352Clytia hemisphaericaexon
TCONS_00047323-exon-scaffold_125-1510915933:78140..78352TCONS_00047323-exon-scaffold_125-1510915933:78140..78352Clytia hemisphaericaexon
TCONS_00047323-exon-scaffold_125-1575043694:78140..78352TCONS_00047323-exon-scaffold_125-1575043694:78140..78352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_125supercontigscaffold_125:78140..78352 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	149.514	82.7656	49.6633	63.819	12.5154	10.1278	11.811	17.0589	8.94181	0	13.2582	10.0175	7.01666	6.06554	7.94746	17.8864	0	0	0	0	6.03033	24.2379	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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