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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047329 ID=TCONS_00047329|Name=TCONS_00047329|organism=Clytia hemisphaerica|type=transcript|length=1910bp
AAAAATCCCAAAAGGGTAGAAACAAATTTTATTACTGATTACCCTCTTGG
TGTTCCAGCACTCGACTATATTTACACTTCcctactttttcaaactttaa
tcatcagAAACAGTCATTTGCAAAGAAATTAAACCAATGGAAATCAATCT
TTCGTGATATTATTATTGGCATTTGTTGATGTTTTTTGTTATCTAGCCCC
CCAATATCTGGACATGAAAGTTTGAGATGTTTGTAAAACAATTATGGCCG
AGGATGTATTCAAGCAACAATTTCCAGGTACCGATCGCAGATTTCAGTGT
GGAGGAAGACTTATTTAGATCAGTGAAAACTTTGCCATCAggagaaaaca
agaaaaaaacaagGTTAGTTCATAAGAAGTCAATACGACTAAAattgtaa
gaaaatatattaaAGTAAGGAAGACTACAAGAATATAGCGTACAAAATAA
CCCCCgtcatagtgtgcaccccctaGGATTTAGGGAAGgagtttattttg
ttttctgaCTTGGAGTTGGAAGTTCTTTACAAAGGAATGTTGTtatgttg
ttctttttttaagGGAGGGGCTTCCAAGCTAACTGCCCAGTAATTCCTCT
GTTATCGAACACAATTACAACCACTGAAACCCATTGTTTTTAGCTGAATT
TTCCATGGAGTGAAAATTTTGTTTGGAATTCTTTTTTGGAGTATCAAATA
TTTTCCAGTGTTGCATGTGGTTTTTACAATTGGACAAACTGATTATAATA
GTACCATAGTTCTGAAAGATCTTATGCCCACGAAATATTTCTTCCCCATG
GAAAGTCATGGTTCACGGTGATGTACTTTCCAACCAATAAAATTAAATCA
CTTctaactcactaaaagattttgtttactgAAAATTcataattaatctt
tagtaagtgttctgcccccccccccccccccNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC
CCCCCCAGCTCTGACGTCATGCCGTAGCGAAGAATTTGCGAATAGTCCTG
CGAAAaagaatacactttttttttataacaacaaagtatataagaacaca
aggcttcgaggtcaaaaaattaagaacaggaTTACGAACATTTGGAAGCT
TTGGAGAATCAAAATCATTGAGGTTCTAACTCTTTGCAATCTTGAGAAAC
CAAAGCATATTTATTGCCAATTTACAACATACATTTATTTCTACAGCAAA
TAACATTAGCTCGTGTGTGTTCAGGAATGACACAAGCGTGACGTTCGTTA
CCGGCTGCTTTGCATGTCAATGTCTCGAAATGAACATTGTTGCCACAGAT
CTTCCAGTATTTGATGTCACATCGAGTTTTGATCATGTCAACTCTTTTTG
CGTTCCAACATCTGACCAGATCATTCAATTGCTCTGTCATTGTTGATCCG
TCTTGGCAAGCCATGAAAGAACCGACGTGTACATCTCTTCGTTTTGAACG
TGTGGAGAAATGTTCTGAAGATAGAGATAGATACACGCGTTTTTATGAGA
ATTAAGAACAGTTTTAAAGGACAATAATGGACTTTATATAAGAAGAAAAT
actatttaaaagaaaaaacttgCATAAAACAGCTATAAATGACCATTTTC
GATGagaattttaagaacaattcaTAGAAAGCttggatgaaaaaaatcca
TTATAGTGTGATCTAAGCTTGTCCTGTACAGATTTTAAGTAAATAAACTT
TATCTCTACAAATACAATATTCCTTACTGTAAATAAGTAAGGGTTTTACT
GGGAAATGTCACCCCAAGTCAAAGTGGTCAAAGTAACAATCGAGCTAGTG
AGGTCTTCTGCTCATCTTGCCCGAAATTCACTTacacttttataaaaaaa
agagatttaa Run BLAST on NCBI transcript from alignment at scaffold_126:136951..143373+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047329 ID=TCONS_00047329|Name=TCONS_00047329|organism=Clytia hemisphaerica|type=transcript|length=6423bp|location=Sequence derived from alignment at scaffold_126:136951..143373+ (Clytia hemisphaerica)
AAAAATCCCAAAAGGGTAGAAACAAATTTTATTACTGATTACCCTCTTGG
TGTTCCAGCACTCGACTATATTTACACTTCcctactttttcaaactttaa
tcatcaggtaggtccaatcagcATTCCTTTATAAGAgacagtaaattttt
ttatgagactcagcttttctttatttttctttttcttttttgccactttg
agcctcaaactGTTCtgatcctgttcttatttatagggttttactatttt
tacccctaaatcacttgaaattgagtaatctCAGGCGCAACGgtattctt
aaattgttcttattttttgtcgatttttgaCCCAATGGGGTTAcaaggga
aatttgaatttgtgatttctttttgggTCCACTCACACCATCGCGCCGAA
AATATCCTTTCAGCACGCTTTTAGAAATCATCGATCACGTCATCACCCCG
TCATCACGTCAAAAAATAGGCCCAATCACGTTATCAAACAAACTGCTAGG
GCTTTCTTATTAGATTGTGCTACAAATATATATCTTCCTATTTTCAGAAA
CAGTCATTTGCAAAGAAATTAAACCAATGGAAATCAATCTTTCGTGATAT
TATTATTGGCATTTGTTGATGTTTTTTGTTATCTAGCCCCCCAATATCTG
GACATGAAAGTTTGAGATGTTTGTAAAACAATTATGGCCGAGGATGTATT
GTAAGTACCATTTCATTATGTTTTAATGGCTCATTAAATGGCCCTTTTCG
GCGATGGCGATTTCACCTTTTTTTGAGATGAAGAAACCATTGAGTAGAAT
CACTAACCTTCCCAGGCAAGAAAGAGTGAAGCCACTCTTTCCCATCCAGG
ACGCGCTTAAAACGCGctgcaatcatgacgacggattttttttgaggact
gcattttttttaaatctagcgatagattttactttcaatccggcgtttgt
gtaaaaaccatgcGCGGGTGTTCTGTatatccaggagtctcgagtctagc
ccttcttggcttggaagtcaatggaaGAAACTCATTCATTGATTTACACT
TATgtatagatatatagatagaGTCAAAATCTAGAACTCTTAAGGGCttt
gaccatagtgaatttttaaatatttgccacttacaaaatataatttttta
cttgatgtagcccacaaaactgtgtCATGTTATACAATTAtccgtgagtc
tgaaaatttaagaatcacaatgagaaaatttgatgaagaagaaaaagaag
acttttgcgaagaagagtatttcaactttgaagagcttagtttcggcgaa
gaaaaaacatttttaaaaactttctgcggtaaatggtgtatcttttatcg
aactaaaattattttttcggagaatttttctaaaagcttatttgcttcaa
aatcttgaaaatagtgctttttgaccaatttttcatcccaatttttcata
gaagaaaagccataacttttgatgcattaatttagaaaagttttccgaaa
aatctaaaacagttcaattctttgtggacagtttgaaaaaacttcgaaac
aaaaaggttaattacccattaaaacttagcactttttataaatgAAGGTG
ATGccacatattattaacgtctttttaaagttcataacgtcgtGAACTTA
ACGgaacctggaggtcctataaatcaaccgttgtccgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgtccgttcaaaatggcaatgcccaaa
atgtcaaggagcctgattttcgaaaaaaattctttttcggtcgaaaatgc
cggaaatatgccggaaaaactgttttttttggcattttctcgagatttta
tcataagtcttttctgattttttgcagattttcattggattttttcctta
gaatatttctttgttttttcacacaaaaatattattgataacaatgccca
ccatcaagcatgattcaattgagATTTCTGTTTCCTAAAagttttgaatc
ttttttttttcaatgaccATGGTCATACTGTATCTCAAAGCGTTTTCTAG
GAATCTTATGAACCTTCAACTCTTATCGATTAAATTTTAATTCTCCCCTT
ATAAGTAGTTAGTACCCTGTCACTTTTATGGTATTTTATAGGGTGTCAAC
TCCTAAAATTACATGGTTGGGACAGGCTGGTGTTGGAATAAGAAGAGATT
TTAGCGTAgatttaaaatgtgtttttctaACACAACCCCTGGCGCCACAG
TGGAGTATTCTTTCATGAATGGCCCATTTCTCTAatgcacaatttttttt
aactatgggaaaatggccgaaaaatgCGTTGTTCGTTTTCTCAGCAATTT
TGCACTGCACTGTAACCCctatttgaattttaaagataGATGTATATGAT
CTCCCTTcaacttaaatatttttttactgtGAAAACTGAAATTATTTATT
ACCATCATAGTACCTTAAAGCAAAaggtatttaatttcgcgaattttaca
CTCCCTTCGGGAAATTTTTACTCCCCTGATAGTATACCAAAAAACTGGCA
TAGATCACGATATCAACGTTCGgtttcctaatcttttttttttcatgttt
atcatgaataaataacaaaaacaatatgGAAACTCTTACTgttattttga
catttaaattgaatttaaacttttttcttgagtgCGATTTGCTTGGGTTA
GAAAATTGAgagatattttaaaaacctggcTACANTCTTGAGTGCGATTT
GCTTGGGTTAGAAAATTGAGAGATATTTTAATGGCCCAATAAAAGTTCTA
GTAAAAAGGCATCTTTCTTGACTATACTgatttcgaaccccccccccctt
ttatatTTGGACCCCTCTATTATTCGGGTCCTTAGAGTAGAATATTTCAA
CaggaaaatgaagataaaaaatcgcTACAGTGGAGATAGCATTCTTTGAT
TTTTCCCCGAACGGATGAAAATGTTCTTGGCGTCACCAGCGCAGGGGTAC
CAGTTcattaaatgtataatttcatagcaatgaaatctgtttgaaaacga
ggacaacaataaatttatgcatctcgagaagagtgtatttctGAAAAGTC
TTCTCTCAAACAAAACATCTTCGGAGACCTGGAAGGTGATGAATAAAATA
ATTCATCCTCGTTTGAAACGAATGAATATTGATCCTGATGAAATCAACGC
CTTTTTCAATTCGACAGCTGTACGCACAACAGCAAAGAACCCAGAAAAAC
TATCAAATTTCTTTATTCGCAACTTACCTGATCACCAAGACAATTTCCAT
CTCCGTCCTGCAACATGTGATGAGGTATCTAAAGCAATGTTGAAATTAAG
ATCAGACTGTTCGACCGGTCACGACAATATACTGTCATTTATCAAACCAG
TTTCAGAATATCTCGTGTGACCCCTAATCCACATTATTAACAGCTGTATC
GAATCATCAATCTTCCCAGATGACTGGAAGATAAGCCGCATATGTCCTGT
CCCGAAATAAAAGTCAATGATCCGCAATCACTTATTGATCACAGACCCAT
CAGTATTTTGCCAATATTGTCCAAAGTCTTCGAGAGAGtgatactcttgt
ctcccgaatagacgccccccgctaattgttaaatgaaaaaaaatccatcc
cccgctcttattaagacccccccccccgctaattaaattcgaataattta
aaattttattacagtgtagatagaccttaaacttgttaaaaattttcttt
ttgttagtattggttcttattttacgtgtttatttgttaaagtttctttN
NNNNNNNNNNNNNttaaattcgaataatttaaaattttattacagtgtag
atagaccttaaccttgttaaaattttcctgtttgttagtattggttctta
ttttacgtgttcatttgttaaagtttctttttttgttgttgacattgata
tcagttaaaaaaaactcTGTCTTCGAATTACCCCCCCCTCTTATTTCACC
CCCCTCCCCCGCTCATTGACCATTATATTTCAGCAAATGATCAAgctatt
tcttataaaaaaacacgcgTATCTGGGACTTTTGGCAATGGTAATTCATA
CAATAACAAAACAGTCTTCGCACGCCAGCTTGTAGTGCTGATTCATGCGC
ATGCGCACTACTGTGAATATTGCTGATTTAGCAATCCCTGATTTGGCCGA
CAAGAACCTTgaataatgttttcaaatttgatttttactcGTTGCTATGg
tcataaagaaaaataaataaatttgttgttcttataaagtgaCGATGAGA
TGTACTCTCTGCCGATTTCACTATGCGAACTATAATGCGAAACCCCAAAA
CGAAGAAATAAAGAGAAAGCtccgattttagaaaaaaagccaTTTTGTCG
TAAAGCAGAACAAACATCTTGCCGGTTAGCCTATTAGCGAGGTAACGCAA
GAGGATACGTGGGACCTTAGACGCGTATAGGTCGGCCTGTACATAATTCG
TATAAACAAAACTTGTAAATGAAAATTTATGTACAGGACCACATTATACC
GTTTAAGGGCCTAAATATCATTTTGCGTAACCTCGAAATTATCGAACGCG
CGTCTTTTTCATGCTATCTCGAGACCTCCttctttgaagaaaacttcTCG
CATGATTTCACGAAATACCAAATCTTCTTATATAAAATTTTGAGGTGCCT
TTTATTTCCCTTTTTATTTATAGCAAGCAACAATTTCCAGGTACCGATCG
CAGATTTCAGTGTGGAGGAAGACTTATTTAGATCAGTGAAAACTTTGCCA
TCAggagaaaacaagaaaaaaacaagGTTAGTTCATAAGAAGTCAATACG
ACTAAAattgtaagaaaatatattaaAGTAAGGAAGACTACAAGAATATA
GCGTACAAAATAACCCCCgtcatagtgtgcaccccctaGGATTTAGGGAA
GgagtttattttgttttctgaCTTGGAGTTGGAAGTTCTTTACAAAGGAA
TGTTGTtatgttgttctttttttaagGGAGGGGCTTCCAAGCTAACTGCC
CAGTAATTCCTCTGTTATCGAACACAATTACAACCACTGAAACCCATTGT
TTTTAGCTGAATTTTCCATGGAGTGAAAATTTTGTTTGGAATTCTTTTTT
GGAGTATCAAATATTTTCCAGTGTTGCATGTGGTTTTTACAATTGGACAA
ACTGATTATAATAGTACCATAGTTCTGAAAGATCTTATGCCCACGAAATA
TTTCTTCCCCATGGAAAGTCATGGTTCACGGTGATGTACTTTCCAACCAA
TAAAATTAAATCACTTctaactcactaaaagattttgtttactgAAAATT
cataattaatctttagtaagtgttctgcccccccccccccccccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCCCCCCCCCCCAGCTCTGACGTCATGCCGTAGCGAAGAATTT
GCGAATAGTCCTGCGAAAaagaatacactttttttttataacaacaaagt
atataagaacacaaggcttcgaggtcaaaaaattaagaacaggaTTACGA
ACATTTGGAAGCTTTGGAGAATCAAAATCATTGAGGTTCTAACTCTTTGC
AATCTTGAGAAACCAAAGCATATTTATTGCCAATTTACAACATACATTTA
TTTCTACAGCAAATAACATTAGCTCGTGTGTGTTCAGGAATGACACAAGC
GTGACGTTCGTTACCGGCTGCTTTGCATGTCAATGTCTCGAAATGAACAT
TGTTGCCACAGATCTTCCAGTATTTGATGTCACATCGAGTTTTGATCATG
TCAACTCTTTTTGCGTTCCAACATCTGACCAGATCATTCAATTGCTCTGT
CATTGTTGATCCGTCTTGGCAAGCCATGAAAGAACCGACGTGTACATCTC
TTCGTTTTGAACGTGTGGAGAAATGTTCTGAAGATAGAGATAGATACACG
CGTTTTTATGAGAATTAAGAACAGTTTTAAAGGACAATAATGGACTTTAT
ATAAGAAGAAAATactatttaaaagaaaaaacttgCATAAAACAGCTATA
AATGACCATTTTCGATGagaattttaagaacaattcaTAGAAAGCttgga
tgaaaaaaatccaTTATAGTGTGATCTAAGCTTGTCCTGTACAGATTTTA
AGTAAATAAACTTTATCTCTACAAATACAATATTCCTTACTGTAAATAAG
TAAGGGTTTTACTGGGAAATGTCACCCCAAGTCAAAGTGGTCAAAGTAAC
AATCGAGCTAGTGAGGTCTTCTGCTCATCTTGCCCGAAATTCACTTacac
ttttataaaaaaaagagatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047329-exon-scaffold_126-1491911889:136951..137057 | TCONS_00047329-exon-scaffold_126-1491911889:136951..137057 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1510915933:136951..137057 | TCONS_00047329-exon-scaffold_126-1510915933:136951..137057 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1575043694:136951..137057 | TCONS_00047329-exon-scaffold_126-1575043694:136951..137057 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1491911889:137498..137650 | TCONS_00047329-exon-scaffold_126-1491911889:137498..137650 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1510915933:137498..137650 | TCONS_00047329-exon-scaffold_126-1510915933:137498..137650 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1575043694:137498..137650 | TCONS_00047329-exon-scaffold_126-1575043694:137498..137650 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1491911889:141724..143373 | TCONS_00047329-exon-scaffold_126-1491911889:141724..143373 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1510915933:141724..143373 | TCONS_00047329-exon-scaffold_126-1510915933:141724..143373 | Clytia hemisphaerica | exon |
| TCONS_00047329-exon-scaffold_126-1575043694:141724..143373 | TCONS_00047329-exon-scaffold_126-1575043694:141724..143373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:136951..143373 + |
Blast
The following BLAST results are available for this feature:
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