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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047334 ID=TCONS_00047334|Name=TCONS_00047334|organism=Clytia hemisphaerica|type=transcript|length=1101bp
CCCTTGGGTAGACGTATGTTGTGGCATTACCGTTaagaaagtatttcttt
tattcCAAATCATCCCTGACAACTGGTACCAGGATCCATCCGTTATAAAT
TGAATATTGCTGTTGACATTGAATTATATAACTGGACCGAGTCATATTtg
gtttttcttataagcatatttttctttgttataaaaaccagtaagtTTTA
ATTCAGACTCTGTTGTTTTTTGTCACTTTGAGTCACTTTATCCGTTCTGT
ATTCAAGGGCCAAACTGGGATATACTAAGCTTTTTCCAGATATTTACTTT
GACCAATAAAGTGCTTAAAATTCAATAATGTCACACTcagcatttttata
agaatgttcttattttcgacGATCTTGAGGttcgttcttttaaaattgtg
cAAAAGTTCATATCATAACAtataaaacaaaatctttacaCATCACACAC
AGTACACAGTGTCCTGATAAAATCATTTTCGTTAATACATCTTTAGACCG
TAGCTGCCGATTGCCGCGTGGGCATTTTTTTCCTGGAattgcgttcttaa
tttttcagactactctaaatcgacaataacATGCAAAATAaggagcactt
aaaattggtaaaatttggacaatatttgactctcgattttagaaaatcca
tccctaagttccgttaaaactgcttgaaaataagaaaaagttgtagtttc
ttgtcatttttttccaagctgaggctgggcatgttcttactatgttctta
atttttcgacgaatttcagcctcaatgttcttataaactcggttctaata
aaaaataaaacgtgtaccctgtatataaaaaaactaaaaagtgcGCTTTT
TAATCACAAAGGATATCTgctactAGCATCACAGCGCTGTCGATCACGGG
CTTAGTTCTTTTGTCTTCGCATAGCCATTCTGGTTTTTTTCAGGCTTTCG
GTATGTGCACTGAAATATCTCCAGTGCAACGAGAAGGCTGCTTCTCTCAC
TGACCCATCATTCGAGTAGACACCATTAAAATTCAACTTGTAGCATAAAT
CATACCACCAACCCCCTCCAAACCTTAATCCACACGATATTTCCTGGCCG
T Run BLAST on NCBI transcript from alignment at scaffold_126:220648..223638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047334 ID=TCONS_00047334|Name=TCONS_00047334|organism=Clytia hemisphaerica|type=transcript|length=2991bp|location=Sequence derived from alignment at scaffold_126:220648..223638+ (Clytia hemisphaerica)
CCCTTGGGTAGACGTATGTTGTGGCATTACCGTTaagaaagtatttcttt
tattcCAAATCATCCCTGACAACTGGTACCAGGATCCATCCGTTATAAAT
TGAATATTGCTGTTGACATTGAATTATATAACTGGACCGAGTCATATTtg
gtttttcttataagcatatttttctttgttataaaaaccagtaagtTTTA
ATTCAGACTCTGTTGTTTTTTGTCACTTTGAGTCACTTTATCCGTTCTGT
ATTCAAGGGCCAAACTGGGATATACTAAGCTTTTTCCAGATATTTACTTT
GACCAATAAAGTGCTTAAAATTCAATAATGTCACACTcagcatttttata
agaatgttcttattttcgacGATCTTGAGGttcgttcttttaaaattgtg
cAAAAGTTCATATCATAACAtataaaacaaaatctttacaCATCACACAC
AGTACACAGTGTCCTGATAAAATCATTTTCGTTAATACATCTTTAGACCG
TAGCTGCCGATTGCCGCGTGGGCATTTTTTTCCTGGAattgcgttcttaa
tttttcagactactctaaatcgacaataacATGCAAAATAaggagcactt
aaaattggtaaaatttggacaatatttgactctcgattttagaaaatcca
tccctaagttccgttaaaactgcttgaaaataagaaaaagttgtagtttc
ttgtcatttttttccaagctgaggctgggcatgttcttactatgttctta
atttttcgacgaatttcagcctcaatgttcttataaactcggttctaata
aaaaataaaacgtgtaccctgtatataaaaaaactaaaaagtgcGCTTTT
TAATCACAAAGGATATCTGCACCTAGCATCatagccagtaccttcccaca
aaccaaattttttctttgttttatggtcagttacaCTTTGAAGCGTTTGT
CGAAAGTTATCGCACTGTGGTGGAGGGTGACGTCGATCCCGTGCGGAGTG
CATAAGGGCGGGAAAACACGGAACTCGAAAATAAAAACTGGAACGGACAA
TCGAATAGGTAGGAGAGGATGTGCGTTGATGTTCAATCTAGTCTCAATTT
TTGAGTTCCGtgcattaaaatcaaaacaaaagagttTGGTGAGCtgaaga
tgtttttttttgaaattattttgatacacCCCTATTATAACGAAAGAACt
atagaagcaaaaaagtttccaaaagtcTTCAAGCAGCTCCAATTAATGGT
ATTGTCAACAGGCTCTTAATTTAGAAAGGTAATGAGATAATCCCACttct
tcaaaaggttttcttccttgtagagaaaagcaaccaaaatcaaatcaaag
aaaactCTCAACACTAGCCATAGCCAGTTTTTGAAACAAggatgtaaaat
aaaaaataatgaggATTCCAAGACTATCATTTGATGGAAATGAGTCGATC
TCGTGCAATTTCAGGATTAAGAggtacaaataatagaaatataaCATTAA
TGtatttaccaaaaaatttagCAAAGTTCTAAAGTTGTAATGAAACTATG
TCAATGACTATAAcatcttaaaaatataaatttatagGAAAGTTagataa
aattaataaaatttagGTAGATTCCTCTCACAATTCGAAGCAAAACCTCC
ACATTTTACTGGCTTACTATCTAGTTTCCAAAGTTGAGAAATTCAAATCT
AAAATCTGCNAAGACAGCTGTGAAGaatgtttttcatttccatTCCCAGC
AAACTTTcgaatcgaatacaatcaaatttcaCTTTGCTTTCAATCATATG
TCAATTtactttccaccattttattaatggaatattttcaaactagcGAC
CAGATAGAGACCACATCGAACAGCCAATAAAAACGataacaaacaaacag
ttcttctttccactggaataggccaggaataaacaaaataaattcttcca
ggtttcATGCCATATCCAAAAGATATTCGTTGCCATCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGCGACttcttaaaaaacgaaaaa
agcacACGCGATGGAGTGCAGCTTGTCCAAAGTCACGGCAAAATGAGCTG
CGCCGAAGAGAAAATCTTGGACGGACTTTTCCGTCCAAGAACATTCGATT
CCACGGCAAAAAGTAACAgacgttaaatcgcgataaaaaagcggttttcg
tctaacaggctactAGCATCACAGCGCTGTCGATCACGGGCTTAGTTCTT
TTGTCTTCGCATAGCCATTCTGGTTTTTTTCAGGCTTTCGGTATGTGCAC
TGAAATATCTCCAGTGCAACGAGAAGGCTGCTTCTCTCACTGACCCATCA
TTCGAGTAGACACCATTAAAATTCAACTTGTAGCATAAATCATACCACCA
ACCCCCTCCAAACCTTAATCCACACGATATTTCCTGGCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047334-exon-scaffold_126-1491911889:220648..221515 | TCONS_00047334-exon-scaffold_126-1491911889:220648..221515 | Clytia hemisphaerica | exon |
| TCONS_00047334-exon-scaffold_126-1510915933:220648..221515 | TCONS_00047334-exon-scaffold_126-1510915933:220648..221515 | Clytia hemisphaerica | exon |
| TCONS_00047334-exon-scaffold_126-1575043694:220648..221515 | TCONS_00047334-exon-scaffold_126-1575043694:220648..221515 | Clytia hemisphaerica | exon |
| TCONS_00047334-exon-scaffold_126-1491911889:223406..223638 | TCONS_00047334-exon-scaffold_126-1491911889:223406..223638 | Clytia hemisphaerica | exon |
| TCONS_00047334-exon-scaffold_126-1510915933:223406..223638 | TCONS_00047334-exon-scaffold_126-1510915933:223406..223638 | Clytia hemisphaerica | exon |
| TCONS_00047334-exon-scaffold_126-1575043694:223406..223638 | TCONS_00047334-exon-scaffold_126-1575043694:223406..223638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:220648..223638 + |
Blast
The following BLAST results are available for this feature:
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