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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047336 ID=TCONS_00047336|Name=TCONS_00047336|organism=Clytia hemisphaerica|type=transcript|length=1861bp
AGAAAACCCAATGTTCACAATATCCCAAACTTTATTTCAcaaactaaatt
ttgaaaatccgatttttaagGGCCGGAAACGACGTTTCACGAACTTGTGA
TCTgctaattttttcctgtgatttTTAAGGGAAAAAATTTCTACAGTAGC
TCTACCACTTTTTACATAGTTTCGTTAATCAATAATATCTGCGTACAGTT
TTCATAGAATTTGAATTGATACAGCCCTTTTTACAACGTGACGTTTGATG
AAATAAACAGATATTTATCACAAGAGTCACTTTTATATCAATTTATATAT
ATCAATTTATATTGACATATAAACATGATAATTCTTTCTTTCACTCTGTT
CTCTTTTCTTACTAAAGTTTCGAcatgaaaattgctaaaaaattaatTGG
GTAAGATGAAAAACCATTTTGACAAAACGAttctatataatttttttatc
ttcacaGAGTCGATACTATATTACTTGTATTTCCCTTTAGAAACTGTTGA
TGTACCCAATCCGAGAGATGGAGAAGGTGAAGAAGGTGGGGGTACAATTC
AGATGCTTGAAGATGTAGAAGATTCGGATGCAGACTCGGATGACTGGAAT
AGTGACGCGGATGAACCAAAACAAAAAGCAAGGAAAAGAAACGCAAAACG
AAACAGGAGAACGTCAGCGCAACAAAAATCTACGAGAACGAAagATTTAG
ATGCAGATTCGGATGACTCGGTTAGTGACGCGGATGAACCAAAATGGAAC
CAGAAAAAGCCagcaaaacaaaccaaaagaaAAGCCTCCAAAGGCAAAAC
CTGGTCGAATGACGAGAAAGAAGCTGTCAGAAGACggcttaaagattttt
ttaaacttaagaAAGTGCCACGACAAGGTGACATTCAACCGTGGctaaaa
gatgaaccagctttGAAGAATCGTGATTGGAAAGCCGTGAAATTTCATGT
CAATTGGGCTATTATTGCTGAAAAAAGACAACTAGcgaaacaaaacacaa
aaaaaagataattaaTCCTCAATCATTTTATTATATTAAGGTGGGTCATC
ACCTTCAGaattaatttttcatgtttttaagtaTTCCGTCGATAACTCTT
GATGACGTAACATTTAGACAAAATTTCACTTGAAAAACTAGTATTGGCTA
ACTACTACCTActtgataaaaaaatacagCCCTTAAAAGCTATAAAATAA
GTCGATATGGGACCAACTAtccgataaaatttttgagtgAGATGGAAGCA
TCTTTTTTTAGCTAGGATATATGATCATgctttttctttgtatatatAGT
TTTCTATTTTTACCTCTTTATCTTCCCAAGGGGGGGGGCAAGGAAGATAT
TGTGCGAGGAGATAACTAACATGAATGACTCCAGTGGAGTCCATGACAGA
TGTTGAATTCTATTATTTTTGTTATGTCTTCCTCGTGTCGTGgggttgat
atttttttcctcAAACATTTTACTGGGAAATGACAATACCTACTAAAATA
TTAACCAATCAGGATCAAGATTTTTCCAGCGGGGAAGGGTAGAATTTTAA
GTATATTTTCCAACAGGACAGTTTAATGGACTTATTTTCCAGTCTGTAAA
ATAGGGTTGGTTTTTATTTTCGATAGCTTTattttcagtaaattttgccT
TAGATAGTTCTCAATCTCTTCTTAGGTTTTGACTTACGGGGCCACTGTTT
TACACATGCCGACCCACTTGTATATAGCACATAGCCTACATGAAATATAT
CTCAGGGTCAACGGACTCATTCTGTCTCCAATTCTTGTCTACCGGCCACT
AATATTGGTTTCATTGATGAGATGTTTAATGTGAATAAAATTTATGGAAG
GCAAATATAAT Run BLAST on NCBI transcript from alignment at scaffold_126:28083..30965- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047336 ID=TCONS_00047336|Name=TCONS_00047336|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at scaffold_126:28083..30965- (Clytia hemisphaerica)
AGAAAACCCAATGTTCACAATATCCCAAACTTTATTTCACAAACTAAATT
TTGAAAATCCGATTTTTAAGGGCCGGAAACGACGTTTCACGAACTTGTGA
TCTGCTAATTTTTTCCTGTGATTTTTAAGGGAAAAAATTTCTACAGTAGC
TCTACCACTTTTTACATAGTTTCGTTAATCAATAATATCTGCGTACAGTT
TTCATAGAATTTGAATTGATACAGCCCTTTTTACAACGTGACGTTTGATG
AAATAAACAGATATTTATCACAAGAGTCACTTTTATATCAATTTATATAT
ATCAATTTATATTGACATATAAACATGATAATTCTTTCTTTCACTCTGTT
CTCTTTTCTTACTAAAGTTTCGACATGAAAATTGCTAAAAAATTAATTGG
GTAAGATGAAAAACCATTTTGACAAAACGATTCTATATAATTTTTTTATC
TTCACAGAGTCGATACTATATTACTTGTATTTCCCTTTAGAAACTGTTGA
TGTACCCAATCCGAGAGATGGAGAAGGTGAAGAAGGTGGGGGTACAATTC
AGATGCTTGAAGGTATCATTACTCGTCACTTATTTGCGTGCATAACAAAA
TTTGCTAGAAATGATGCAGTATTTATTTATGGAGAATGATTTTTACATAT
AAAATATTGAACTTGATTGCATTAAAATGATTGTCTTTTGCTGCCTTTTG
AACTTGATTTGGCCCAATCAAAATTGCAAGAAAACTTGAAAATTTGCTTA
ACTTTAATCATGTTAACATTCACCTAAAGAATTCGTCATTTGTTATAAGA
GCGACCCACACATACTAAATATTGTAATTATAAGAATTTTACAAACTACT
TCTATTTTCTTCGTAAGTATTTGCAAATCATTGTTAAAAGTTTTGTTCAT
TTCACAGATGTAGAAGATTCGGATGCAGACTCGGATGACTGGAATAGTGA
CGCGGATGAACCAAAACAAAAAGCAAGGAAAAGAAACGCAAAACGAAACA
GGAGAACGTCAGCGCAACAAAAATCTACGAGAACGAAAGGTAAAGTCTGT
CTCAATATAATTACCAGTGGAGGCATGCTCAAAGATTTCTCAGCGAGTAA
TTTTCACTTCATAGATTATACACTTAATTAAGTCTGTTTCAACGTAATTG
GCAGTGGAAGCATCTCTAAGTATTTCTCAACGAATATTTTTCATCAAACG
TAAATCTGAAAATGAAAATGAAAAATGAAGAAGAAAAAGAACTTTCCATC
CTTTGGTGCTGGAAACTTCATTTTTATTACAGAGGGTACTTTGAACCTTG
CCGATTTCAAATATATGATTATTCTTCTCATAGCTATATTAGTTTAAAAG
TTACATATTAGGAGCGACCCACACTAATGGAGCTTCAAGTATTGTCATTC
TAGGAATTTTTCAAATTATTTCTATTTTCTTTTAAAGTATATTGGCCAAC
TATTTTTGAAACTTTTGTTTACTTTACAGATTTAGATGCAGATTCGGATG
ACTCGGTTAGTGACGCGGATGAACCAAAATGGAACCAGAAAAAGCCAGCA
AAACAAACCAAAAGAAAAGCCTCCAAAGGTAGTTATTTAATTTCCCCTAG
GGACTTTTGTTACTTCATGTAAAGGACGTGCTAGCTAGACAAATCTTGTT
GATGTTTTCTTCCAAAATAAGTAGTTTATTAGCTCGTATCTATGGAAAGC
AAGAAGTGACAATTCTTTCTTAAACAACGAAATCTATGCTTTTTTAATCT
TAGCTGTCTGTTGTAGCATGGGTATAAGCTTAGCGGTGCTAATATTTTTT
TTCTCTGTTTTACAGGCAAAACCTGGTCGAATGACGAGAAAGAAGCTGTC
AGAAGACGGCTTAAAGATTTTTTTAAACTTAAGAAAGTGCCACGACAAGG
TGACATTCAACCGTGGCTAAAAGATGAACCAGCTTTGAAGAATCGTGATT
GGAAAGCCGTGAAATTTCATGTCAATTGGGCTATTATTGCTGAAAAAAGA
CAACTAGCGAAACAAAACACAAAAAAAAGATAATTAATCCTCAATCATTT
TATTATATTAAGGTGGGTCATCACCTTCAGAATTAATTTTTCATGTTTTT
AAGTATTCCGTCGATAACTCTTGATGACGTAACATTTAGACAAAATTTCA
CTTGAAAAACTAGTATTGGCTAACTACTACCTACTTGATAAAAAAATACA
GCCCTTAAAAGCTATAAAATAAGTCGATATGGGACCAACTATCCGATAAA
ATTTTTGAGTGAGATGGAAGCATCTTTTTTTAGCTAGGATATATGATCAT
GCTTTTTCTTTGTATATATAGTTTTCTATTTTTACCTCTTTATCTTCCCA
AGGGGGGGGGCAAGGAAGATATTGTGCGAGGAGATAACTAACATGAATGA
CTCCAGTGGAGTCCATGACAGATGTTGAATTCTATTATTTTTGTTATGTC
TTCCTCGTGTCGTGGGGTTGATATTTTTTTCCTCAAACATTTTACTGGGA
AATGACAATACCTACTAAAATATTAACCAATCAGGATCAAGATTTTTCCA
GCGGGGAAGGGTAGAATTTTAAGTATATTTTCCAACAGGACAGTTTAATG
GACTTATTTTCCAGTCTGTAAAATAGGGTTGGTTTTTATTTTCGATAGCT
TTATTTTCAGTAAATTTTGCCTTAGATAGTTCTCAATCTCTTCTTAGGTT
TTGACTTACGGGGCCACTGTTTTACACATGCCGACCCACTTGTATATAGC
ACATAGCCTACATGAAATATATCTCAGGGTCAACGGACTCATTCTGTCTC
CAATTCTTGTCTACCGGCCACTAATATTGGTTTCATTGATGAGATGTTTA
ATGTGAATAAAATTTATGGAAGGCAAATATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047336-exon-scaffold_126-1575043694:30404..30965 | TCONS_00047336-exon-scaffold_126-1575043694:30404..30965 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1575043694:29927..30058 | TCONS_00047336-exon-scaffold_126-1575043694:29927..30058 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1575043694:29388..29486 | TCONS_00047336-exon-scaffold_126-1575043694:29388..29486 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1575043694:28083..29150 | TCONS_00047336-exon-scaffold_126-1575043694:28083..29150 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1510915933:30404..30965 | TCONS_00047336-exon-scaffold_126-1510915933:30404..30965 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1510915933:29927..30058 | TCONS_00047336-exon-scaffold_126-1510915933:29927..30058 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1510915933:29388..29486 | TCONS_00047336-exon-scaffold_126-1510915933:29388..29486 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1510915933:28083..29150 | TCONS_00047336-exon-scaffold_126-1510915933:28083..29150 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1491911889:30404..30965 | TCONS_00047336-exon-scaffold_126-1491911889:30404..30965 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1491911889:29927..30058 | TCONS_00047336-exon-scaffold_126-1491911889:29927..30058 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1491911889:29388..29486 | TCONS_00047336-exon-scaffold_126-1491911889:29388..29486 | Clytia hemisphaerica | exon |
| TCONS_00047336-exon-scaffold_126-1491911889:28083..29150 | TCONS_00047336-exon-scaffold_126-1491911889:28083..29150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:28083..30965 - |
Blast
The following BLAST results are available for this feature:
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