TCONS_00047342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047342
Unique NameTCONS_00047342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047342 ID=TCONS_00047342|Name=TCONS_00047342|organism=Clytia hemisphaerica|type=transcript|length=1492bp
AATACATAAGGCAAtggcatttttcaaaataaataaagcaACTGTAgaac
tagaaaaagagataaagCACTGTGAATTGAAAGATTTGTCGATCGATTTC
ACCCAAAAGGTTGGAGAGGGTGCTTATGCATCAGTATATAAGCACAATAT
AAGGAACAGTGATGCTGctatcaaattattcaaaaaacctATATCATTAA
AAAAACTCTTGGTTACCTCTGTAAAGATGAACAAATTAACTCATGAAAAT
GTTGTTAGATTTCTCGCATATTCCGTCAAGCCCTCTGCTATAGTATTTGA
ATTGTGTGAAGTTAAAGCCTCCGACGACACACTCGTCCACAATGTAGCAG
AGTTAATTGATttatttaatgaaaatgaaTATTTCAACCTAAAGGAAAGG
CTAGACATCGTCTTACAATCCGCTAAAGGGCTTAGCTACCTTCACAATAA
TTCGATCATCCACAAGGATTTTAAACCAAATAATTGTTTAGTTACTGGTG
ATCTAGACAATATCAAAGTTAAAGTGGCCGATTTCGACGATATTTTTGAT
ATCAAAAATACAGTAACATCAACTCTGACAAGTAATTGTAACCAAAAGAA
ACAAGGAATAACTCTAGCATATTCGGCGCCAGATTTATTATTGGAAAATA
AAACTCCGTCAGTGGAAAGTGATGTTTACTCCTTTGCTATATCAACCTAT
GCAATCCTTGGAAATGTTGATGGGATGCCTTGGTAATGCATACACTAAAG
AGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTATAAAGACTC
TGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTTGGAATGATC
AAATCAATACACGCCCCACTATGCAAAAGgTGGTCAGTTCTTTGGAAGAA
ATTATAAGAAAGaaatCAATTGAAGTAATCGAAACAATTGATGATAAAGC
ACCTACAACTACGGTAGTTGTAACAGAGCCCCCTGTGAGGCCGAAGAGAG
AAAAGAGAGAAGAGGTTGACAAATTGAATAAATTGAAGGCCTTAGAATAC
ATTACGAAAGAAGAAGACCCTGAATATATCGAAAAGTTGTTTATAGGTCA
TTCAATAGGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAAAGGGGGAAT
TTGTAGCCTCCTATGAAGGAGAAAGAATCACTCATGCTGAAGGCTCAAAG
CGACTACAAGAAGATACCGATCGAAGCTACTTGTACTTTGTAGCgcacaa
aagagaaaaattttgCATTGATGCATCAAAAGTCGACAGACTCGGACGTT
ACATCAACGATTCCAAGAACCATAATTGTGTGGTTAAGACCATTGAAAAC
AGCAGCGGAGTTCTATGTGTAGCAATATTTGCCGCAAGTGATATAGCCGA
GGGAAGGGAGTTTCGATATGACTACAATGATTGTAACTTATTCTGGAGAA
AGCAGGTATTTGAGGCATTGCTACTAAATTAAGTtgattttt
Run BLAST on NCBI

protein sequence of TCONS_00047342-protein

>TCONS_00047342-protein ID=TCONS_00047342-protein|Name=TCONS_00047342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MHTLKSGKRPLVDTLHNVYKDSELVNEVADMVKQAWNDQINTRPTMQKVV
SSLEEIIRKKSIEVIETIDDKAPTTTVVVTEPPVRPKREKREEVDKLNKL
KALEYITKEEDPEYIEKLFIGHSIGFGVFAKRNIKKGEFVASYEGERITH
AEGSKRLQEDTDRSYLYFVAHKREKFCIDASKVDRLGRYINDSKNHNCVV
KTIENSSGVLCVAIFAASDIAEGREFRYDYNDCNLFWRKQVFEALLLN
Run BLAST on NCBI

transcript from alignment at scaffold_126:45837..48975-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047342 ID=TCONS_00047342|Name=TCONS_00047342|organism=Clytia hemisphaerica|type=transcript|length=3139bp|location=Sequence derived from alignment at scaffold_126:45837..48975- (Clytia hemisphaerica)
AATACATAAGGCAATGGCATTTTTCAAAATAAATAAAGCAACTGTAGAAC
TAGAAAAAGAGATAAAGCACTGTGAATTGAAAGATTTGTCGATCGATTTC
ACCCAAAAGGTTGGAGAGGGTGCTTATGCATCAGTATATAAGCACAATAT
AAGGAACAGTGATGCTGCTATCAAATTATTCAAAAAACCTATATCATTAA
AAAAACTCTTGGTTACCTCTGTAAAGATGAACAAATTAACTCATGAAAAT
GTTGTTAGATTTCTCGCATATTCCGTCAAGCCCTCTGCTATAGTATTTGA
ATTGTGTGAAGTTAAAGCCTCCGACGACACACTCGTCCACAATGTAGCAG
AGTTAATTGATTTATTTAATGAAAATGAATATTTCAACCTAAAGGAAAGG
CTAGACATCGTCTTACAATCCGCTAAAGGGCTTAGCTACCTTCACAATAA
TTCGATCATCCACAAGGATTTTAAACCAAATAATTGTTTAGTTACTGGTG
ATCTAGACAATATCAAAGTTAAAGTGGCCGATTTCGACGATATTTTTGAT
ATCAAAAATACAGTAACATCAACTCTGACAAGTAATTGTAACCAAAAGAA
ACAAGGAATAACTCTAGCATATTCGGCGCCAGATTTATTATTGGAAAATA
AAACTCCGTCAGTGGAAAGTGATGTTTACTCCTTTGCTATATCAACCTAT
GCAATCCTTGGAAATGTTGATGGGATGCCTTGGTAATGCATACACTAAAG
AGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTATAAAGACTC
TGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTTGGAATGATC
AAATCAATACACGCCCCACTATGCAAAAGGTGATATTGGATTATTTTATA
AAAGAATGTGTGCGATTTTGATATACCTTTTCTAACATTGCTTTTGTTTT
GTTTGCTATAACTTTTTCCATACAAGCTATCCATCAATGATGATTTTTTT
TAAACTTTAGGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAGGTATCCC
AAACTAATTTCTTTTTAATTCTACTAATTTTGGTAACAAAGTCGCACTAT
ACTCGGATTTTTTACCTATCTATCGTTTATCTAGTGCATCCATAAAAATG
CGGTACCTTAATAAGGTAACATTCAAGCTTGTAGACATTGCTTTCTACTC
AAAATGTTCCGCTTTTGTGTGGGCGCAGTGGCAATCAGTGCTATAACAAA
GTTAAAAAATGAAGGCTTCCTCGGAGTTTTCTTTCTTTCTCCTAACTTTT
TTGTAAGTAAGATTCCACTTCATTGTTATGTCTTAATTGATCTGAATTCT
ATTAAAAAAGTAGATAACATCTTTTTCAGTAGGCTTTTATTACCAGTGCA
ATGAAAAATTTATACCTTTTTTGGCATTTTTTTTCATAGAAATCAATTGA
AGTAATCGAAACAATTGATGATAAAGCACCTACAACTACGGTAGTTGTAA
CAGAGCCCCCTGTAAGATTTTTTTGTAAATTTTACAAATTCTTATAAATT
AATATTAGACCGATGAGTTTTATTAGCCATTCTCTCAACAATAAGATAAG
GGTTCGAAAAAAATCATAAAATATTATAAAACATATCATAAAACATTCAA
GTCCTCTTCTCTTCCGTGGACGGAGTGGAAGCTTCCAATCTACTGTATGT
TTGTTACTGTCTGTTGTAATTTTTATACATTATTTATTGTTTCATTTTAC
TAGGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGTTGACAAATTGAATAA
ATTGAAGGCCTTAGAATACATTACGAAAGAAGAAGACCCTGAATATATCG
AAAAGTTGTTTATAGGTCATTCAATAGGTAATAAGTACCGTTGGTTTGTT
TAATGTTTTGCGCTGTTTACATTATTTTTAGTTTTTAGCATAATGGATTG
AAAAGTATTACTTATTAATGATTTTTATTAACGGTTTTTAAAAAGGATAC
CGAGATGAATGGACCTAACTACCGGAATTGACTTATTTTCAAAGAGATCA
TATACGAATTAGATTGATTTTTTTCCAGGTTTTGGTGTGTTTGCCAAAAG
AAACATCAAAAAGGGGGAATTTGTAGCCTCCTATGAAGGAGAAAGAATCA
CTCATGCTGAAGGCTCAAAGCGACTACAAGAAGATACCGATCGAAGCTAC
TTGTACTTTGTAGCGCACAAAAGAGAAAAATTTTGGTAAAGGTTTCTAAA
GTATATCCCAAAACAAAAAGAATTGGCAGTTGACACATTTTGCTTTCCTG
CTCCTAAAAATATAAAATGTTACGAAGATAAGTGATGCCTCCTTGGAAAG
ATAATTAAAAGTGGGTAGTTATTAAAAATTAAAATTTGTCAAAAAGTTTG
AAAATGTAGTGAAACAAACAGATTTTTGTCTAGCAATCCTAAGAACTTGA
AATTTAGTAGAAAAAATATTTCAATGGAGCTGATCAGTATACATTACTTT
CCTTGAATGTTATAGAGGTAGAGGGATCAAAAAGTTCAAAATCGGATTGA
AATTGGGGAAAAATCGGGAACCTAGGCCTACTTTGAGGAGATATTTCGAT
ACCCAGAAGGGTTCTGGTAAACACCTGTTACTTTTATATCTCATAATTAT
CCCTTCTAAACTATCTTTCCAATGAGGTATCACTTGCTATTGTGGCAATT
CCATTCAGAATTTCTGACAAAAACTAGAAAACAAAAAAGTGCCAACTGGC
AATTCTTTTGGGATAAAATTTTAGTGCTATTTAGATCATCTTGTTTTCTT
AAGATAAATTTTCTACATTTTTAGATTTTTCTTTCTTTTACATCATCAAC
TTGCTAAGGCATAGAAATACCATTCTTAACTTATAGACAACTATTTTTTT
GCGCTCTTATAGCATTGATGCATCAAAAGTCGACAGACTCGGACGTTACA
TCAACGATTCCAAGAACCATAATTGTGTGGTTAAGACCATTGAAAACAGC
AGCGGAGTTCTATGTGTAGCAATATTTGCCGCAAGTGATATAGCCGAGGG
AAGGGAGTTTCGATATGACTACAATGATTGTAACTTATTCTGGAGAAAGC
AGGTATTTGAGGCATTGCTACTAAATTAAGTTGATTTTT

Coding sequence (CDS) from alignment at scaffold_126:45837..48975-

>TCONS_00047342 ID=TCONS_00047342|Name=TCONS_00047342|organism=Clytia hemisphaerica|type=CDS|length=4482bp|location=Sequence derived from alignment at scaffold_126:45837..48975- (Clytia hemisphaerica)
CATTGATGCATCAAAAGTCGACAGACTCGGACGTTACATCAACGATTCCA
AGAACCATAATTGTGTGGTTAAGACCATTGAAAACAGCAGCGGAGTTCTA
TGTGTAGCAATATTTGCCGCAAGTGATATAGCCGAGGGAAGGGAGTTTCG
ATATGACTACAATGATTGTAACTTATTCTGGAGAAAGCAGGTATTTGAGG
CATTGCTACTAAATTAAGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAA
AGGGGGAATTTGTAGCCTCCTATGAAGGAGAAAGAATCACTCATGCTGAA
GGCTCAAAGCGACTACAAGAAGATACCGATCGAAGCTACTTGTACTTTGT
AGCGCACAAAAGAGAAAAATTTTGGTGAGGCCGAAGAGAGAAAAGAGAGA
AGAGGTTGACAAATTGAATAAATTGAAGGCCTTAGAATACATTACGAAAG
AAGAAGACCCTGAATATATCGAAAAGTTGTTTATAGGTCATTCAATAGAA
ATCAATTGAAGTAATCGAAACAATTGATGATAAAGCACCTACAACTACGG
TAGTTGTAACAGAGCCCCCTGTGGTCAGTTCTTTGGAAGAAATTATAAGA
AAGATGCATACACTAAAGAGCGGAAAACGACCACTCGTTGATACCCTGCA
TAATGTTTATAAAGACTCTGAGTTGGTGAATGAAGTTGCTGATATGGTTA
AACAAGCTTGGAATGATCAAATCAATACACGCCCCACTATGCAAAAGCAT
TGATGCATCAAAAGTCGACAGACTCGGACGTTACATCAACGATTCCAAGA
ACCATAATTGTGTGGTTAAGACCATTGAAAACAGCAGCGGAGTTCTATGT
GTAGCAATATTTGCCGCAAGTGATATAGCCGAGGGAAGGGAGTTTCGATA
TGACTACAATGATTGTAACTTATTCTGGAGAAAGCAGGTATTTGAGGCAT
TGCTACTAAATTAAGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAAAGG
GGGAATTTGTAGCCTCCTATGAAGGAGAAAGAATCACTCATGCTGAAGGC
TCAAAGCGACTACAAGAAGATACCGATCGAAGCTACTTGTACTTTGTAGC
GCACAAAAGAGAAAAATTTTGGTGAGGCCGAAGAGAGAAAAGAGAGAAGA
GGTTGACAAATTGAATAAATTGAAGGCCTTAGAATACATTACGAAAGAAG
AAGACCCTGAATATATCGAAAAGTTGTTTATAGGTCATTCAATAGAAATC
AATTGAAGTAATCGAAACAATTGATGATAAAGCACCTACAACTACGGTAG
TTGTAACAGAGCCCCCTGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAG
ATGCATACACTAAAGAGCGGAAAACGACCACTCGTTGATACCCTGCATAA
TGTTTATAAAGACTCTGAGTTGGTGAATGAAGTTGCTGATATGGTTAAAC
AAGCTTGGAATGATCAAATCAATACACGCCCCACTATGCAAAAGCATTGA
TGCATCAAAAGTCGACAGACTCGGACGTTACATCAACGATTCCAAGAACC
ATAATTGTGTGGTTAAGACCATTGAAAACAGCAGCGGAGTTCTATGTGTA
GCAATATTTGCCGCAAGTGATATAGCCGAGGGAAGGGAGTTTCGATATGA
CTACAATGATTGTAACTTATTCTGGAGAAAGCAGGTATTTGAGGCATTGC
TACTAAATTAAGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAAAGGGGG
AATTTGTAGCCTCCTATGAAGGAGAAAGAATCACTCATGCTGAAGGCTCA
AAGCGACTACAAGAAGATACCGATCGAAGCTACTTGTACTTTGTAGCGCA
CAAAAGAGAAAAATTTTGGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGT
TGACAAATTGAATAAATTGAAGGCCTTAGAATACATTACGAAAGAAGAAG
ACCCTGAATATATCGAAAAGTTGTTTATAGGTCATTCAATAGAAATCAAT
TGAAGTAATCGAAACAATTGATGATAAAGCACCTACAACTACGGTAGTTG
TAACAGAGCCCCCTGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAGATG
CATACACTAAAGAGCGGAAAACGACCACTCGTTGATACCCTGCATAATGT
TTATAAAGACTCTGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAG
CTTGGAATGATCAAATCAATACACGCCCCACTATGCAAAAGCATTGATGC
ATCAAAAGTCGACAGACTCGGACGTTACATCAACGATTCCAAGAACCATA
ATTGTGTGGTTAAGACCATTGAAAACAGCAGCGGAGTTCTATGTGTAGCA
ATATTTGCCGCAAGTGATATAGCCGAGGGAAGGGAGTTTCGATATGACTA
CAATGATTGTAACTTATTCTGGAGAAAGCAGGTATTTGAGGCATTGCTAC
TAAATTAAGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAAAGGGGGAAT
TTGTAGCCTCCTATGAAGGAGAAAGAATCACTCATGCTGAAGGCTCAAAG
CGACTACAAGAAGATACCGATCGAAGCTACTTGTACTTTGTAGCGCACAA
AAGAGAAAAATTTTGGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGTTGA
CAAATTGAATAAATTGAAGGCCTTAGAATACATTACGAAAGAAGAAGACC
CTGAATATATCGAAAAGTTGTTTATAGGTCATTCAATAGAAATCAATTGA
AGTAATCGAAACAATTGATGATAAAGCACCTACAACTACGGTAGTTGTAA
CAGAGCCCCCTGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAGATGCAT
ACACTAAAGAGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTA
TAAAGACTCTGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTT
GGAATGATCAAATCAATACACGCCCCACTATGCAAAAGCATTGATGCATC
AAAAGTCGACAGACTCGGACGTTACATCAACGATTCCAAGAACCATAATT
GTGTGGTTAAGACCATTGAAAACAGCAGCGGAGTTCTATGTGTAGCAATA
TTTGCCGCAAGTGATATAGCCGAGGGAAGGGAGTTTCGATATGACTACAA
TGATTGTAACTTATTCTGGAGAAAGCAGGTATTTGAGGCATTGCTACTAA
ATTAAGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAAAGGGGGAATTTG
TAGCCTCCTATGAAGGAGAAAGAATCACTCATGCTGAAGGCTCAAAGCGA
CTACAAGAAGATACCGATCGAAGCTACTTGTACTTTGTAGCGCACAAAAG
AGAAAAATTTTGGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGTTGACAA
ATTGAATAAATTGAAGGCCTTAGAATACATTACGAAAGAAGAAGACCCTG
AATATATCGAAAAGTTGTTTATAGGTCATTCAATAGAAATCAATTGAAGT
AATCGAAACAATTGATGATAAAGCACCTACAACTACGGTAGTTGTAACAG
AGCCCCCTGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAGATGCATACA
CTAAAGAGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTATAA
AGACTCTGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTTGGA
ATGATCAAATCAATACACGCCCCACTATGCAAAAGCATTGATGCATCAAA
AGTCGACAGACTCGGACGTTACATCAACGATTCCAAGAACCATAATTGTG
TGGTTAAGACCATTGAAAACAGCAGCGGAGTTCTATGTGTAGCAATATTT
GCCGCAAGTGATATAGCCGAGGGAAGGGAGTTTCGATATGACTACAATGA
TTGTAACTTATTCTGGAGAAAGCAGGTATTTGAGGCATTGCTACTAAATT
AAGTTTTGGTGTGTTTGCCAAAAGAAACATCAAAAAGGGGGAATTTGTAG
CCTCCTATGAAGGAGAAAGAATCACTCATGCTGAAGGCTCAAAGCGACTA
CAAGAAGATACCGATCGAAGCTACTTGTACTTTGTAGCGCACAAAAGAGA
AAAATTTTGGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGTTGACAAATT
GAATAAATTGAAGGCCTTAGAATACATTACGAAAGAAGAAGACCCTGAAT
ATATCGAAAAGTTGTTTATAGGTCATTCAATAGAAATCAATTGAAGTAAT
CGAAACAATTGATGATAAAGCACCTACAACTACGGTAGTTGTAACAGAGC
CCCCTGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAGATGCATACACTA
AAGAGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTATAAAGA
CTCTGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTTGGAATG
ATCAAATCAATACACGCCCCACTATGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030158XLOC_030158Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047342-proteinTCONS_00047342-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047342-exon-scaffold_126-1575043694:48097..48975TCONS_00047342-exon-scaffold_126-1575043694:48097..48975Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1575043694:47933..47965TCONS_00047342-exon-scaffold_126-1575043694:47933..47965Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1575043694:47465..47536TCONS_00047342-exon-scaffold_126-1575043694:47465..47536Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1575043694:47099..47222TCONS_00047342-exon-scaffold_126-1575043694:47099..47222Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1575043694:46741..46897TCONS_00047342-exon-scaffold_126-1575043694:46741..46897Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1575043694:45837..46063TCONS_00047342-exon-scaffold_126-1575043694:45837..46063Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1510915933:48097..48975TCONS_00047342-exon-scaffold_126-1510915933:48097..48975Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1510915933:47933..47965TCONS_00047342-exon-scaffold_126-1510915933:47933..47965Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1510915933:47465..47536TCONS_00047342-exon-scaffold_126-1510915933:47465..47536Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1510915933:47099..47222TCONS_00047342-exon-scaffold_126-1510915933:47099..47222Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1510915933:46741..46897TCONS_00047342-exon-scaffold_126-1510915933:46741..46897Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1510915933:45837..46063TCONS_00047342-exon-scaffold_126-1510915933:45837..46063Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1491911889:48097..48975TCONS_00047342-exon-scaffold_126-1491911889:48097..48975Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1491911889:47933..47965TCONS_00047342-exon-scaffold_126-1491911889:47933..47965Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1491911889:47465..47536TCONS_00047342-exon-scaffold_126-1491911889:47465..47536Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1491911889:47099..47222TCONS_00047342-exon-scaffold_126-1491911889:47099..47222Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1491911889:46741..46897TCONS_00047342-exon-scaffold_126-1491911889:46741..46897Clytia hemisphaericaexon
TCONS_00047342-exon-scaffold_126-1491911889:45837..46063TCONS_00047342-exon-scaffold_126-1491911889:45837..46063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:45837..48975 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.49846	2.15112	1.63536	2.5226	1.51463	2.16474	0.840461	1.34438	1.07199	0.726717	0	0	0	0	0	0	0	0	0	0	0	1.72228	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00047342 vs. Swiss-Prot (Human)
Match: BRAF (Serine/threonine-protein kinase B-raf OS=Homo sapiens GN=BRAF PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 8.391e-21
Identity = 68/219 (31.05%), Postives = 114/219 (52.05%), Query Frame = 2 
Query:   74 ELKDLSIDFTQKVGEGAYASVYKHNIRNSDAAIKLF----KKPISLKKLLVTSVKMNKLTHENVVRFLAYSVKPS-AIVFELCEVKASDDTLVHNVAELIDLFNENEYFNLKERLDIVLQSAKGLSYLHNNSIIHKDFKPNNCLVTGDLDNIKVKVADFDDIFDIKNTVTSTLTSNCNQKKQGITLAYSAPDLL-LENKTP-SVESDVYSFAISTYAIL 709
            E+ D  I   Q++G G++ +VYK    + D A+K+       P  L+        + K  H N++ F+ YS KP  AIV + CE      +L H++  +I+       F + + +DI  Q+A+G+ YLH  SIIH+D K NN  +  DL    VK+ DF        TV S  + +   ++   ++ + AP+++ +++K P S +SDVY+F I  Y ++
Sbjct:  451 EIPDGQITVGQRIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCE----GSSLYHHL-HIIET-----KFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDL---TVKIGDFG-----LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 650
The following BLAST results are available for this feature:
BLAST of TCONS_00047342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAF8.391e-2131.05Serine/threonine-protein kinase B-raf OS=Homo sapi... [more]
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